17-8053899-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053899
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053899
    reference: chr 17
allele count: 1
allele frequency: 8.248783304462591e-6
allele num: 121230
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.126C>G
  hgvsp: ENST00000581082.1:c.126C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.126C>G
  hgvsp: ENST00000584202.1:c.126C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.126C>G
  hgvsp: ENST00000581395.1:c.126C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.78C>G
  hgvsp: ENST00000354903.5:c.78C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.126C>G
  hgvsp: ENST00000581703.1:c.126C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.126C>G
  hgvsp: ENST00000577253.1:c.126C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.126C>G
  hgvsp: ENST00000317276.4:c.126C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.126C>G
  hgvsp: ENST00000582719.1:c.126C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.312C>G
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8369
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3680
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala42Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

17-8053904-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053904
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053904
    reference: chr 17
allele count: 1
allele frequency: 8.251914444151043e-6
allele num: 121184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.121C>T
  hgvsp: ENST00000581703.1:c.121C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.121C>T
  hgvsp: ENST00000317276.4:c.121C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.121C>T
  hgvsp: ENST00000577253.1:c.121C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.307C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.121C>T
  hgvsp: ENST00000581395.1:c.121C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.73C>T
  hgvsp: ENST00000354903.5:c.73C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.121C>T
  hgvsp: ENST00000582719.1:c.121C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.121C>T
  hgvsp: ENST00000581082.1:c.121C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.121C>T
  hgvsp: ENST00000584202.1:c.121C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11033
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22656
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu41Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

17-8053909-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053909
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053909
    reference: chr 17
allele count: 2
allele frequency: 1.651609493451368e-5
allele num: 121094
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.116C>G
  hgvsp: ENSP00000462064.1:p.Pro39Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.116C>G
  hgvsp: ENSP00000464696.1:p.Pro39Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.116C>G
  hgvsp: ENSP00000463054.1:p.Pro39Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.116C>G
  hgvsp: ENSP00000463385.1:p.Pro39Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.116C>G
  hgvsp: ENSP00000314420.4:p.Pro39Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.68C>G
  hgvsp: ENSP00000346979.5:p.Pro23Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.302C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.116C>G
  hgvsp: ENSP00000462546.1:p.Pro39Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.116C>G
  hgvsp: ENSP00000463661.1:p.Pro39Arg
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16368
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3675
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro39Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

17-8053914-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053914
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053914
    reference: chr 17
allele count: 2
allele frequency: 1.653165812530997e-5
allele num: 120980
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.111A>C
  hgvsp: ENST00000317276.4:c.111A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.297A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.111A>C
  hgvsp: ENST00000584202.1:c.111A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.111A>C
  hgvsp: ENST00000577253.1:c.111A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.63A>C
  hgvsp: ENST00000354903.5:c.63A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.111A>C
  hgvsp: ENST00000581082.1:c.111A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.111A>C
  hgvsp: ENST00000582719.1:c.111A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.111A>C
  hgvsp: ENST00000581703.1:c.111A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.111A>C
  hgvsp: ENST00000581395.1:c.111A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8455
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13174
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5089
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8353
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro37Pro
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

17-8053915-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053915
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053915
    reference: chr 17
allele count: 2
allele frequency: 1.654341820106871e-5
allele num: 120894
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.110C>A
  hgvsp: ENSP00000462546.1:p.Pro37Gln
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.110C>A
  hgvsp: ENSP00000464696.1:p.Pro37Gln
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.62C>A
  hgvsp: ENSP00000346979.5:p.Pro21Gln
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.296C>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.110C>A
  hgvsp: ENSP00000462064.1:p.Pro37Gln
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.110C>A
  hgvsp: ENSP00000314420.4:p.Pro37Gln
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.110C>A
  hgvsp: ENSP00000463054.1:p.Pro37Gln
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.110C>A
  hgvsp: ENSP00000463661.1:p.Pro37Gln
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.110C>A
  hgvsp: ENSP00000463385.1:p.Pro37Gln
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5306
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8329
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro37Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-8053916-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053916
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053916
    reference: chr 17
allele count: 1330
allele frequency: 1.100155510703769e-2
allele num: 120892
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.295C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.109C>T
  hgvsp: ENSP00000314420.4:p.Pro37Ser
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.109C>T
  hgvsp: ENSP00000462546.1:p.Pro37Ser
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.109C>T
  hgvsp: ENSP00000463661.1:p.Pro37Ser
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.109C>T
  hgvsp: ENSP00000464696.1:p.Pro37Ser
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.61C>T
  hgvsp: ENSP00000346979.5:p.Pro21Ser
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.109C>T
  hgvsp: ENSP00000462064.1:p.Pro37Ser
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.109C>T
  hgvsp: ENSP00000463054.1:p.Pro37Ser
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.109C>T
  hgvsp: ENSP00000463385.1:p.Pro37Ser
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 12978
  bin: 3.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8282
  bin: 3.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 9.75e1
  variant carriers: 920
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 16142
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 5.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9698
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 4.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22144
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro37Ser
num of homozygotes: 24
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

17-8053917-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053917
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053917
    reference: chr 17
allele count: 77
allele frequency: 6.370480681724167e-4
allele num: 120870
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.108C>T
  hgvsp: ENST00000581703.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.108C>T
  hgvsp: ENST00000577253.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.108C>T
  hgvsp: ENST00000317276.4:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.294C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.108C>T
  hgvsp: ENST00000581082.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.60C>T
  hgvsp: ENST00000354903.5:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.108C>T
  hgvsp: ENST00000581395.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.108C>T
  hgvsp: ENST00000584202.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.108C>T
  hgvsp: ENST00000582719.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5257
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 8424
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9723
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10781
  bin: 9.75e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Cys36Cys
num of homozygotes: 1
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-8053917-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053917
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053917
    reference: chr 17
allele count: 2
allele frequency: 1.654670306941342e-5
allele num: 120870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.60C>A
  hgvsp: ENSP00000346979.5:p.Cys20Ter
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.108C>A
  hgvsp: ENSP00000314420.4:p.Cys36Ter
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.108C>A
  hgvsp: ENSP00000463385.1:p.Cys36Ter
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.108C>A
  hgvsp: ENSP00000463661.1:p.Cys36Ter
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.108C>A
  hgvsp: ENSP00000462546.1:p.Cys36Ter
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.108C>A
  hgvsp: ENSP00000463054.1:p.Cys36Ter
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.108C>A
  hgvsp: ENSP00000462064.1:p.Cys36Ter
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.108C>A
  hgvsp: ENSP00000464696.1:p.Cys36Ter
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.294C>A
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8424
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Cys36Ter
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum

17-8053927-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053927
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053927
    reference: chr 17
allele count: 1
allele frequency: 8.297515723792297e-6
allele num: 120518
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.98A>G
  hgvsp: ENSP00000462546.1:p.His33Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.50A>G
  hgvsp: ENSP00000346979.5:p.His17Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.98A>G
  hgvsp: ENSP00000464696.1:p.His33Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.98A>G
  hgvsp: ENSP00000314420.4:p.His33Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.98A>G
  hgvsp: ENSP00000463385.1:p.His33Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.98A>G
  hgvsp: ENSP00000463661.1:p.His33Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.98A>G
  hgvsp: ENSP00000463054.1:p.His33Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.98A>G
  hgvsp: ENSP00000462064.1:p.His33Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.284A>G
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His33Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS

17-8053929-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053929
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053929
    reference: chr 17
allele count: 1
allele frequency: 8.30937463646486e-6
allele num: 120346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.96G>A
  hgvsp: ENST00000577253.1:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.96G>A
  hgvsp: ENST00000581395.1:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-1G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.96G>A
  hgvsp: ENST00000582719.1:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.96G>A
  hgvsp: ENST00000584202.1:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.96G>A
  hgvsp: ENST00000317276.4:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-1G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.96G>A
  hgvsp: ENST00000581082.1:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.282G>A
  variant of: http://identifiers.org/hgnc/8845
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8302
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
hgvs: c.49-1G>A
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

17-8053933-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053933
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053933
    reference: chr 17
allele count: 3
allele frequency: 2.500041667361123e-5
allele num: 119998
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-5C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.92C>G
  hgvsp: ENSP00000462546.1:p.Pro31Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.92C>G
  hgvsp: ENSP00000463054.1:p.Pro31Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.92C>G
  hgvsp: ENSP00000464696.1:p.Pro31Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.92C>G
  hgvsp: ENSP00000463661.1:p.Pro31Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.92C>G
  hgvsp: ENSP00000314420.4:p.Pro31Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.92C>G
  hgvsp: ENSP00000462064.1:p.Pro31Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-5C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.278C>G
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16119
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13125
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3027
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro31Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

17-8053933-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053933
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053933
    reference: chr 17
allele count: 2
allele frequency: 1.666694444907415e-5
allele num: 119998
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.278C>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.92C>A
  hgvsp: ENSP00000314420.4:p.Pro31Gln
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-5C>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.92C>A
  hgvsp: ENSP00000463661.1:p.Pro31Gln
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.92C>A
  hgvsp: ENSP00000463054.1:p.Pro31Gln
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.92C>A
  hgvsp: ENSP00000462064.1:p.Pro31Gln
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-5C>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.92C>A
  hgvsp: ENSP00000462546.1:p.Pro31Gln
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.92C>A
  hgvsp: ENSP00000464696.1:p.Pro31Gln
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3633
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro31Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

17-8053946-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053946
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053946
    reference: chr 17
allele count: 2
allele frequency: 1.683728448275862e-5
allele num: 118784
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.79T>C
  hgvsp: ENSP00000464696.1:p.Ser27Pro
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.79T>C
  hgvsp: ENSP00000462546.1:p.Ser27Pro
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.79T>C
  hgvsp: ENSP00000314420.4:p.Ser27Pro
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.79T>C
  hgvsp: ENSP00000463661.1:p.Ser27Pro
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-18T>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.265T>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.79T>C
  hgvsp: ENSP00000463054.1:p.Ser27Pro
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.79T>C
  hgvsp: ENSP00000462064.1:p.Ser27Pro
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-18T>C
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12969
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8046
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3026
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3586
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2377
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser27Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD

17-8053950-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053950
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053950
    reference: chr 17
allele count: 1
allele frequency: 8.459521191100584e-6
allele num: 118210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-22C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.75C>T
  hgvsp: ENST00000581395.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.75C>T
  hgvsp: ENST00000581082.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.75C>T
  hgvsp: ENST00000317276.4:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-22C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.75C>T
  hgvsp: ENST00000584202.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.75C>T
  hgvsp: ENST00000582719.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.261C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.75C>T
  hgvsp: ENST00000577253.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8352
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3573
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val25Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

17-8053953-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053953
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053953
    reference: chr 17
allele count: 13
allele frequency: 1.103153321340077e-4
allele num: 117844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-25C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.72C>T
  hgvsp: ENST00000577253.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.258C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.72C>T
  hgvsp: ENST00000581082.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.72C>T
  hgvsp: ENST00000317276.4:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.72C>T
  hgvsp: ENST00000584202.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.72C>T
  hgvsp: ENST00000582719.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.72C>T
  hgvsp: ENST00000581395.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-25C>T
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12758
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8348
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7876
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4177
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4977
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly24Gly
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

17-8053953-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053953
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053953
    reference: chr 17
allele count: 1
allele frequency: 8.485794779539051e-6
allele num: 117844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.72C>A
  hgvsp: ENST00000581395.1:c.72C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.72C>A
  hgvsp: ENST00000584202.1:c.72C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.72C>A
  hgvsp: ENST00000577253.1:c.72C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.72C>A
  hgvsp: ENST00000582719.1:c.72C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-25C>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.72C>A
  hgvsp: ENST00000317276.4:c.72C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.72C>A
  hgvsp: ENST00000581082.1:c.72C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-25C>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.258C>A
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4977
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly24Gly
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP

17-8053956-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053956
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053956
    reference: chr 17
allele count: 1
allele frequency: 8.5090451149572e-6
allele num: 117522
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.69G>A
  hgvsp: ENST00000581395.1:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.69G>A
  hgvsp: ENST00000577253.1:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.69G>A
  hgvsp: ENST00000317276.4:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.69G>A
  hgvsp: ENST00000581082.1:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.69G>A
  hgvsp: ENST00000582719.1:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.69G>A
  hgvsp: ENST00000584202.1:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-28G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-28G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.255G>A
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4172
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3405
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly23Gly
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-8053958-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053958
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053958
    reference: chr 17
allele count: 1
allele frequency: 8.524131817174421e-6
allele num: 117314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.67G>A
  hgvsp: ENSP00000462546.1:p.Gly23Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.253G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.67G>A
  hgvsp: ENSP00000314420.4:p.Gly23Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.67G>A
  hgvsp: ENSP00000464696.1:p.Gly23Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.67G>A
  hgvsp: ENSP00000462064.1:p.Gly23Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.67G>A
  hgvsp: ENSP00000463661.1:p.Gly23Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.67G>A
  hgvsp: ENSP00000463054.1:p.Gly23Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-30G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-30G>A
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3143
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18863
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly23Arg
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

17-8053960-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053960
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053960
    reference: chr 17
allele count: 5
allele frequency: 4.269417309925541e-5
allele num: 117112
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.65C>T
  hgvsp: ENSP00000462064.1:p.Pro22Leu
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.65C>T
  hgvsp: ENSP00000463661.1:p.Pro22Leu
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-32C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.65C>T
  hgvsp: ENSP00000462546.1:p.Pro22Leu
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-32C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.65C>T
  hgvsp: ENSP00000314420.4:p.Pro22Leu
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.65C>T
  hgvsp: ENSP00000463054.1:p.Pro22Leu
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.65C>T
  hgvsp: ENSP00000464696.1:p.Pro22Leu
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.251C>T
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8305
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4952
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4165
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro22Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

17-8053960-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053960
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053960
    reference: chr 17
allele count: 2
allele frequency: 1.707766923970216e-5
allele num: 117112
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.65C>G
  hgvsp: ENSP00000462064.1:p.Pro22Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.65C>G
  hgvsp: ENSP00000462546.1:p.Pro22Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.65C>G
  hgvsp: ENSP00000463054.1:p.Pro22Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.65C>G
  hgvsp: ENSP00000464696.1:p.Pro22Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.65C>G
  hgvsp: ENSP00000463661.1:p.Pro22Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.65C>G
  hgvsp: ENSP00000314420.4:p.Pro22Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.251C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-32C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-32C>G
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12670
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8305
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3779
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4165
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro22Arg
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

17-8053978-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053978
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053978
    reference: chr 17
allele count: 1
allele frequency: 8.749671887304227e-6
allele num: 114290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.233C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.47C>T
  hgvsp: ENSP00000464696.1:p.Pro16Leu
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.47C>T
  hgvsp: ENSP00000462546.1:p.Pro16Leu
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.47C>T
  hgvsp: ENSP00000463661.1:p.Pro16Leu
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.47C>T
  hgvsp: ENSP00000462064.1:p.Pro16Leu
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-50C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.47C>T
  hgvsp: ENSP00000463054.1:p.Pro16Leu
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.47C>T
  hgvsp: ENSP00000314420.4:p.Pro16Leu
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-50C>T
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16355
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3492
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3015
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro16Leu
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-8053980-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053980
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053980
    reference: chr 17
allele count: 1
allele frequency: 8.8261253309797e-6
allele num: 113300
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.45G>A
  hgvsp: ENST00000317276.4:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.45G>A
  hgvsp: ENST00000582719.1:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.45G>A
  hgvsp: ENST00000581395.1:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.45G>A
  hgvsp: ENST00000584202.1:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.45G>A
  hgvsp: ENST00000581082.1:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.45G>A
  hgvsp: ENST00000577253.1:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-52G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-52G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.231G>A
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg15Arg
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

17-8053982-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053982
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053982
    reference: chr 17
allele count: 2
allele frequency: 1.764944668984627e-5
allele num: 113318
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-54A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.229A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.43A>C
  hgvsp: ENST00000317276.4:c.43A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.43A>C
  hgvsp: ENST00000582719.1:c.43A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.43A>C
  hgvsp: ENST00000577253.1:c.43A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.43A>C
  hgvsp: ENST00000581082.1:c.43A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.43A>C
  hgvsp: ENST00000584202.1:c.43A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-54A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.43A>C
  hgvsp: ENST00000581395.1:c.43A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3011
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5281
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg15Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

17-8053985-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053985
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053985
    reference: chr 17
allele count: 1
allele frequency: 8.850810734263259e-6
allele num: 112984
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.40C>T
  hgvsp: ENSP00000462546.1:p.Pro14Ser
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.40C>T
  hgvsp: ENSP00000314420.4:p.Pro14Ser
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-57C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.40C>T
  hgvsp: ENSP00000463661.1:p.Pro14Ser
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.40C>T
  hgvsp: ENSP00000463054.1:p.Pro14Ser
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.40C>T
  hgvsp: ENSP00000462064.1:p.Pro14Ser
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.40C>T
  hgvsp: ENSP00000464696.1:p.Pro14Ser
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.226C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-57C>T
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro14Ser
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/17-8053989-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053989
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053989
    reference: chr 17
allele count: 1
allele frequency: 8.912497103438442e-6
allele num: 112202
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.36G>T
  hgvsp: ENST00000581395.1:c.36G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.222G>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.36G>T
  hgvsp: ENST00000581082.1:c.36G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.36G>T
  hgvsp: ENST00000584202.1:c.36G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-61G>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.36G>T
  hgvsp: ENST00000577253.1:c.36G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.36G>T
  hgvsp: ENST00000317276.4:c.36G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-61G>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.36G>T
  hgvsp: ENST00000582719.1:c.36G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5393
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2114
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly12Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS

17-8053990-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053990
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053990
    reference: chr 17
allele count: 1
allele frequency: 8.946784525641484e-6
allele num: 111772
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.35G>C
  hgvsp: ENSP00000314420.4:p.Gly12Ala
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-62G>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-62G>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.35G>C
  hgvsp: ENSP00000463054.1:p.Gly12Ala
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.221G>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.35G>C
  hgvsp: ENSP00000464696.1:p.Gly12Ala
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.35G>C
  hgvsp: ENSP00000463661.1:p.Gly12Ala
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.35G>C
  hgvsp: ENSP00000462064.1:p.Gly12Ala
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.35G>C
  hgvsp: ENSP00000462546.1:p.Gly12Ala
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4866
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4133
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly12Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

17-8053995-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8053995
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8053995
    reference: chr 17
allele count: 1
allele frequency: 9.06059727457234e-6
allele num: 110368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.30G>A
  hgvsp: ENST00000581395.1:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.30G>A
  hgvsp: ENST00000584202.1:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.30G>A
  hgvsp: ENST00000581082.1:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.30G>A
  hgvsp: ENST00000317276.4:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.216G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.30G>A
  hgvsp: ENST00000577253.1:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-67G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-67G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.30G>A
  hgvsp: ENST00000582719.1:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5125
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8052
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3005
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly10Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

17-8054006-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054006
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054006
    reference: chr 17
allele count: 1
allele frequency: 9.224241306152569e-6
allele num: 108410
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.19G>A
  hgvsp: ENSP00000314420.4:p.Gly7Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.19G>A
  hgvsp: ENSP00000462546.1:p.Gly7Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.19G>A
  hgvsp: ENSP00000463661.1:p.Gly7Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.19G>A
  hgvsp: ENSP00000463054.1:p.Gly7Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-78G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-78G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.19G>A
  hgvsp: ENSP00000464696.1:p.Gly7Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.19G>A
  hgvsp: ENSP00000462064.1:p.Gly7Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.205G>A
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8010
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3807
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4747
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2603
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly7Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

17-8054012-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054012
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054012
    reference: chr 17
allele count: 1
allele frequency: 9.283844254228792e-6
allele num: 107714
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.13C>G
  hgvsp: ENSP00000464696.1:p.Leu5Val
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-84C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.13C>G
  hgvsp: ENSP00000314420.4:p.Leu5Val
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.13C>G
  hgvsp: ENSP00000463054.1:p.Leu5Val
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.199C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.13C>G
  hgvsp: ENSP00000462064.1:p.Leu5Val
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.13C>G
  hgvsp: ENSP00000463661.1:p.Leu5Val
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-84C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.13C>G
  hgvsp: ENSP00000462546.1:p.Leu5Val
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7997
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu5Val
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

17-8054024-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054024
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054024
    reference: chr 17
allele count: 1
allele frequency: 9.389671361502347e-6
allele num: 106500
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.1A>G
  hgvsp: ENSP00000462064.1:p.Met1?
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.1A>G
  hgvsp: ENSP00000462546.1:p.Met1?
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.1A>G
  hgvsp: ENSP00000463054.1:p.Met1?
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.1A>G
  hgvsp: ENSP00000463661.1:p.Met1?
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.1A>G
  hgvsp: ENSP00000464696.1:p.Met1?
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.1A>G
  hgvsp: ENSP00000314420.4:p.Met1?
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-96A>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.187A>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-96A>G
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2108
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3533
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15532
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4120
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

17-8054030-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054030
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054030
    reference: chr 17
allele count: 2
allele frequency: 1.888181869677687e-5
allele num: 105922
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-6C>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-102C>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-102C>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-6C>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.-6C>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-6C>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-6C>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.181C>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-6C>A
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4342
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6334
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11754
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7982
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4793
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3078
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15392
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP

17-8054039-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054039
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054039
    reference: chr 17
allele count: 1
allele frequency: 9.486945962355799e-6
allele num: 105408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.-15C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-15C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-111C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-15C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-15C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-15C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.172C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-111C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-15C>G
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4771
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2780
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

17-8054046-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054046
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054046
    reference: chr 17
allele count: 8
allele frequency: 7.611943138784753e-5
allele num: 105098
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-22C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-22C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-22C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-22C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.165C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-118C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.-22C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-22C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-118C>T
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4987
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7961
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5097
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2999
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/17-8054048-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054048
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054047
    reference: chr 17
allele count: 1
allele frequency: 9.522539851829281e-6
allele num: 105014
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-25delG
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-25delG
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-25delG
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.-25delG
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-25delG
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-121delG
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-25delG
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-121delG
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.162delG
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3108
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5098
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5026
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3000
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3333
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: AC
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

17-8054051-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054051
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054051
    reference: chr 17
allele count: 1
allele frequency: 9.541438467263325e-6
allele num: 104806
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.-27C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-27C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-123C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-27C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-27C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.160C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-123C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-27C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-27C>T
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5096
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5088
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7954
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3108
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3305
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6873
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP

17-8054073-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054073
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054073
    reference: chr 17
allele count: 6
allele frequency: 5.775561673372735e-5
allele num: 103886
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-49C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.-49C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-145C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-49C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-49C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.138C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-49C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-49C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-145C>T
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7827
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6792
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10737
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3863
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4553
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2062
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

17-8054074-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054074
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054074
    reference: chr 17
allele count: 176
allele frequency: 1.693414925143363e-3
allele num: 103932
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-50C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-146C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.-50C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-50C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.137C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-50C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-50C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-146C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-50C>T
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6778
  bin: 2.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7833
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5097
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 10841
  bin: 2.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 10708
  bin: 3.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2432
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 1
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

17-8054076-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054076
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054076
    reference: chr 17
allele count: 1
allele frequency: 9.622046031868217e-6
allele num: 103928
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-52A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.135A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-148A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-52A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.-52A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-148A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-52A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-52A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-52A>C
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5002
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7824
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5102
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3870
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10678
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8201
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

17-8054084-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054084
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054084
    reference: chr 17
allele count: 1
allele frequency: 1.120950566080036e-5
allele num: 89210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-156C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.-60C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-60C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-60C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-156C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.127C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-60C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-60C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-60C>T
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5503
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7964
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13508
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

17-8054086-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054086
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054086
    reference: chr 17
allele count: 3
allele frequency: 3.389830508474576e-5
allele num: 88500
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-62C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-158C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-62C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.-62C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-62C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-62C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-62C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.125C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-158C>T
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19881
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7974
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5182
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5062
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

17-8054087-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054087
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054087
    reference: chr 17
allele count: 1
allele frequency: 1.13394112577675e-5
allele num: 88188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-159C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-63C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-63C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-159C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-63C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-63C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-63C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.-63C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.124C>T
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5068
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4556
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP

17-8054100-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054100
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054100
    reference: chr 17
allele count: 1
allele frequency: 1.356152865551005e-5
allele num: 73738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.111C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-172C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-76C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-76C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-76C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-172C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-76C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.-76C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-76C>T
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11301
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ

17-8054100-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054100
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054100
    reference: chr 17
allele count: 1
allele frequency: 1.356152865551005e-5
allele num: 73738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-76C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-76C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.-76C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-76C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-76C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.111C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-76C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-172C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-172C>G
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2488
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4838
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

17-8054106-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054106
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054106
    reference: chr 17
allele count: 2
allele frequency: 3.117206982543641e-5
allele num: 64160
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.105C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-178C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-82C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-82C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-82C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.-82C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-82C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-82C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-178C>T
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6564
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16840
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5293
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

17-8054115-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054115
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054115
    reference: chr 17
allele count: 1
allele frequency: 1.736472876293672e-5
allele num: 57588
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-187A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-91A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.96A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-91A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.-91A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-91A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-91A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-91A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-187A>C
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4093
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17873
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2192
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

17-8054116-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054116
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054116
    reference: chr 17
allele count: 1
allele frequency: 1.776072747939756e-5
allele num: 56304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-92C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-92C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.95C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-92C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-92C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.-92C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-188C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-188C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-92C>T
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6540
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17951
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20824
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6494
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

17-8054120-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054120
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054120
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 52328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-96C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-96C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-192C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-192C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-96C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.-96C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-96C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-96C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.91C>T
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7291
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21862
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35218
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5177
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD

17-8054122-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054122
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054122
    reference: chr 17
allele count: 1
allele frequency: 2.046915298644942e-5
allele num: 48854
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.89A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-98A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-194A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-98A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.-98A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-98A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-98A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-98A>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-194A>C
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8024
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18008
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3761
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-8054124-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054124
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054124
    reference: chr 17
allele count: 1
allele frequency: 2.104642842109694e-5
allele num: 47514
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-100A>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.87A>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-100A>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-196A>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-100A>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-100A>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.-100A>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-100A>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-196A>G
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17851
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8326
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22864
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35330
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8428
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-8054135-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054135
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054135
    reference: chr 17
allele count: 1
allele frequency: 2.776081283659986e-5
allele num: 36022
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-207C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.-111C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-111C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.76C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-111C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000263620
  ensembl protein: ENSP00000464383
  ensembl transcript: ENST00000498285
  gene symbol: RP11-599B13.6
  hgvsc: ENST00000498285.1:c.363C>G
  hgvsp: ENST00000498285.1:c.363C>G(p.%3D)
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-111C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-207C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-111C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-111C>G
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11969
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro121Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-8054139-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054139
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054139
    reference: chr 17
allele count: 1
allele frequency: 3.133224714876551e-5
allele num: 31916
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000263620
  ensembl protein: ENSP00000464383
  ensembl transcript: ENST00000498285
  gene symbol: RP11-599B13.6
  hgvsc: ENST00000498285.1:c.359A>G
  hgvsp: ENSP00000464383.1:p.Gln120Arg
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-115A>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-115A>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-211A>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.72A>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-115A>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-115A>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-115A>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-211A>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462064
  ensembl transcript: ENST00000581082
  gene symbol: PER1
  hgvsc: ENST00000581082.1:c.-115A>G
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13773
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln120Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
reference allele: T
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/17-8054153-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054153
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054153
    reference: chr 17
allele count: 27
allele frequency: 1.574711302927796e-3
allele num: 17146
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-129T>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-225T>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000263620
  ensembl protein: ENSP00000464383
  ensembl transcript: ENST00000498285
  gene symbol: RP11-599B13.6
  hgvsc: ENST00000498285.1:c.345T>G
  hgvsp: ENSP00000464383.1:p.Cys115Trp
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-225T>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-129T>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-129T>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-129T>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.58T>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-129T>G
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22465
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8840
  bin: 1.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21075
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1715
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21232
  bin: 7.5e0
  variant carriers: 5
hgvs: p.Cys115Trp
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum

17-8054156-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054156
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054156
    reference: chr 17
allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-132C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000263620
  ensembl protein: ENSP00000464383
  ensembl transcript: ENST00000498285
  gene symbol: RP11-599B13.6
  hgvsc: ENST00000498285.1:c.342C>G
  hgvsp: ENST00000498285.1:c.342C>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-228C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-228C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-132C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-132C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-132C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-132C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.55C>G
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22786
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7778
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21803
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23082
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23019
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly114Gly
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

http://identifiers.org/exac.variant/17-8054157-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054157
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054157
    reference: chr 17
allele count: 2
allele frequency: 1.233197681588359e-4
allele num: 16218
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-133G>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-229G>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-133G>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000263620
  ensembl protein: ENSP00000464383
  ensembl transcript: ENST00000498285
  gene symbol: RP11-599B13.6
  hgvsc: ENST00000498285.1:c.341G>T
  hgvsp: ENSP00000464383.1:p.Gly114Val
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.54G>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-229G>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-133G>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-133G>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-133G>T
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21824
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7698
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22889
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23367
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly114Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

17-8054160-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054160
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054160
    reference: chr 17
allele count: 1
allele frequency: 6.738544474393532e-5
allele num: 14840
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000263620
  ensembl protein: ENSP00000464383
  ensembl transcript: ENST00000498285
  gene symbol: RP11-599B13.6
  hgvsc: ENST00000498285.1:c.338C>G
  hgvsp: ENSP00000464383.1:p.Thr113Ser
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-136C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-232C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-136C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-136C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-232C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-136C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-136C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.51C>G
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20899
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24372
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7016
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21891
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1941
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr113Ser
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

17-8054167-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054167
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054167
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 11570
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-139-4C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-139-4C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.48-4C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000263620
  ensembl protein: ENSP00000464383
  ensembl transcript: ENST00000498285
  gene symbol: RP11-599B13.6
  hgvsc: ENST00000498285.1:c.335-4C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-239C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-139-4C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-239C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-139-4C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-139-4C>G
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5495
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18532
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27736
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27951
  bin: 7.5e0
  variant carriers: 0
hgvs: c.-139-4C>G
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

17-8054170-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054170
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054170
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 9764
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-139-7T>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.48-7T>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-242T>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-242T>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000263620
  ensembl protein: ENSP00000464383
  ensembl transcript: ENST00000498285
  gene symbol: RP11-599B13.6
  hgvsc: ENST00000498285.1:c.335-7T>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-139-7T>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-139-7T>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-139-7T>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-139-7T>C
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29606
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16756
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 1.75e1
  variant carriers: 0
hgvs: c.-139-7T>C
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

17-8054172-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054172
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054172
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 9390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-244C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.48-9C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-139-9C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-139-9C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-139-9C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263620
  ensembl protein: ENSP00000464383
  ensembl transcript: ENST00000498285
  gene symbol: RP11-599B13.6
  hgvsc: ENST00000498285.1:c.335-9C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-139-9C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-244C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-139-9C>T
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30018
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14982
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS

http://identifiers.org/exac.variant/17-8054176-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054176
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054176
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 7552
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.48-13T>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-139-13T>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-248T>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-139-13T>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-139-13T>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-139-13T>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263620
  ensembl protein: ENSP00000464383
  ensembl transcript: ENST00000498285
  gene symbol: RP11-599B13.6
  hgvsc: ENST00000498285.1:c.335-13T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-248T>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-139-13T>G
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31939
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14443
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2273
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11931
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/17-8054199-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054199
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054199
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 1972
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.48-36T>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-139-36T>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-271T>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-139-36T>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263620
  ensembl protein: ENSP00000464383
  ensembl transcript: ENST00000498285
  gene symbol: RP11-599B13.6
  hgvsc: ENST00000498285.1:c.335-36T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-139-36T>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-139-36T>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-139-36T>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-271T>G
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9099
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6440
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29952
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

17-8054210-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8054210
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8054210
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 1360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-139-47G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.48-47G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263620
  ensembl protein: ENSP00000464383
  ensembl transcript: ENST00000498285
  gene symbol: RP11-599B13.6
  hgvsc: ENST00000498285.1:c.335-47G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-282G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-139-47G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-139-47G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.97-282G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-139-47G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-139-47G>A
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8898
  bin: 7.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34699
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

17-8055629-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8055629
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8055629
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 2
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-139-1466G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-139-1466G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463054
  ensembl transcript: ENST00000582719
  gene symbol: PER1
  hgvsc: ENST00000582719.1:c.-140+26G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.96+26G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.47+26G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-139-1466G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-140+26G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263620
  ensembl protein: ENSP00000464383
  ensembl transcript: ENST00000498285
  gene symbol: RP11-599B13.6
  hgvsc: ENST00000498285.1:c.335-1466G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-1701G>A
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

17-8055683-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8055683
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8055683
    reference: chr 17
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-168A>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000179094
  ensembl transcript: ENST00000579065
  gene symbol: PER1
  hgvsc: ENST00000579065.1:n.19A>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-139-1520A>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.68A>T
  hgvsp: ENSP00000463385.1:p.Gln23Leu
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-1755A>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263620
  ensembl protein: ENSP00000464383
  ensembl transcript: ENST00000498285
  gene symbol: RP11-599B13.6
  hgvsc: ENST00000498285.1:c.335-1520A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-139-1520A>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-139-1520A>T
  variant of: http://identifiers.org/hgnc/8845
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln23Leu
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS

17-8055723-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8055723
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8055723
    reference: chr 17
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000314420
  ensembl transcript: ENST00000317276
  gene symbol: PER1
  hgvsc: ENST00000317276.4:c.-208T>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-139-1560T>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-140+1525T>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-1795T>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463385
  ensembl transcript: ENST00000581703
  gene symbol: PER1
  hgvsc: ENST00000581703.1:c.28T>C
  hgvsp: ENSP00000463385.1:p.Trp10Arg
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-139-1560T>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263620
  ensembl protein: ENSP00000464383
  ensembl transcript: ENST00000498285
  gene symbol: RP11-599B13.6
  hgvsc: ENST00000498285.1:c.335-1560T>C
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 27
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 11
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  variant carriers: 8
hgvs: p.Trp10Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

17-8055785-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8055785
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8055785
    reference: chr 17
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-139-1622G>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263620
  ensembl protein: ENSP00000464383
  ensembl transcript: ENST00000498285
  gene symbol: RP11-599B13.6
  hgvsc: ENST00000498285.1:c.335-1622G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.49-1857G>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-139-1622G>C
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-140+1463G>C
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3940
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

17-8059585-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8059585
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8059585
    reference: chr 17
allele count: 1
allele frequency: 9.338812103100486e-5
allele num: 10708
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-140+40G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-140+40G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.48+40G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263620
  ensembl protein: ENSP00000464383
  ensembl transcript: ENST00000498285
  gene symbol: RP11-599B13.6
  hgvsc: ENST00000498285.1:c.334+5206G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-191+40G>A
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

17-8059591-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8059591
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8059591
    reference: chr 17
allele count: 2
allele frequency: 1.863238308179616e-4
allele num: 10734
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-140+34C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-191+34C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.48+34C>G
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263620
  ensembl protein: ENSP00000464383
  ensembl transcript: ENST00000498285
  gene symbol: RP11-599B13.6
  hgvsc: ENST00000498285.1:c.334+5200C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-140+34C>G
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2942
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2168
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

17-8059594-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8059594
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8059594
    reference: chr 17
allele count: 2
allele frequency: 1.861850679575498e-4
allele num: 10742
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263620
  ensembl protein: ENSP00000464383
  ensembl transcript: ENST00000498285
  gene symbol: RP11-599B13.6
  hgvsc: ENST00000498285.1:c.334+5197G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.48+31G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-140+31G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-191+31G>A
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-140+31G>A
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2253
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-8059595-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8059595
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8059595
    reference: chr 17
allele count: 1
allele frequency: 9.302325581395348e-5
allele num: 10750
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263620
  ensembl protein: ENSP00000464383
  ensembl transcript: ENST00000498285
  gene symbol: RP11-599B13.6
  hgvsc: ENST00000498285.1:c.334+5196G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-140+30G>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-140+30G>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.48+30G>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-191+30G>T
  variant of: http://identifiers.org/hgnc/8845
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2280
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3014
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

17-8059615-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8059615
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 8059615
    reference: chr 17
allele count: 2
allele frequency: 1.84945441094877e-4
allele num: 10814
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000464696
  ensembl transcript: ENST00000581395
  gene symbol: PER1
  hgvsc: ENST00000581395.1:c.-140+10C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000346979
  ensembl transcript: ENST00000354903
  gene symbol: PER1
  hgvsc: ENST00000354903.5:c.48+10C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000463661
  ensembl transcript: ENST00000584202
  gene symbol: PER1
  hgvsc: ENST00000584202.1:c.-191+10C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179094
  ensembl protein: ENSP00000462546
  ensembl transcript: ENST00000577253
  gene symbol: PER1
  hgvsc: ENST00000577253.1:c.-140+10C>T
  variant of: http://identifiers.org/hgnc/8845
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263620
  ensembl protein: ENSP00000464383
  ensembl transcript: ENST00000498285
  gene symbol: RP11-599B13.6
  hgvsc: ENST00000498285.1:c.334+5176C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3024
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3036
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4246
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5104
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22667
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11037
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.624639076034648e-5
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

DP
type: SiteQuality
SIO_000300: 2.002712e6

QD
type: SiteQuality
SIO_000300: 1.129e1

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-1

FS
type: SiteQuality
SIO_000300: 1.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

GenotypeQuality
all individuals: 3033
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2155
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8372
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4240
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3678
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5102
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50154659299078e-5
allele num: 66598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.222e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.976e1

FS
type: SiteQuality
SIO_000300: 1.253e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.06e-1

DP
type: SiteQuality
SIO_000300: 2.001435e6

VQSLOD
type: SiteQuality
SIO_000300: 1.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4235
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22579
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5103
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3032
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8368
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11035
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00507858280494e-5
allele num: 66554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.09e0

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 2.822e0

DP
type: SiteQuality
SIO_000300: 2.000098e6

QD
type: SiteQuality
SIO_000300: 1.291e1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.44e-1

GenotypeQuality
all individuals: 3659
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11023
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3030
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22477
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4225
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66516
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.222344456667889e-4
allele num: 16362
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.184e0

FS
type: SiteQuality
SIO_000300: 2.594e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

MQ
type: SiteQuality
SIO_000300: 5.944e1

QD
type: SiteQuality
SIO_000300: 1.272e1

VQSLOD
type: SiteQuality
SIO_000300: 4.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.16e-1

DP
type: SiteQuality
SIO_000300: 1.997716e6

GenotypeQuality
all individuals: 3030
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11021
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3661
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5085
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4223
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22256
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.007518796992481e-5
allele num: 66500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.49e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

FS
type: SiteQuality
SIO_000300: 5.985e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.995959e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.96e-1

QD
type: SiteQuality
SIO_000300: 1.15e1

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4117
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8237
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11696
bin: 9.75e1
variant carriers: 1305

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3614
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4970
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2085
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 22
allele frequency: 3.328290468986384e-3
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1071
allele frequency: 1.6104778803645e-2
allele num: 66502
num of homozygotes: 17

South Asian
type: Population
allele count: 128
allele frequency: 7.856616744414437e-3
allele num: 16292
num of homozygotes: 5

Other
type: Population
allele count: 18
allele frequency: 1.982378854625551e-2
allele num: 908
num of homozygotes: 1

African
type: Population
allele count: 31
allele frequency: 2.989969135802469e-3
allele num: 10368
num of homozygotes: 0

Latino
type: Population
allele count: 60
allele frequency: 5.188516084399862e-3
allele num: 11564
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.419e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.83e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.93e0

DP
type: SiteQuality
SIO_000300: 2.092614e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.42e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5071
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22567
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3677
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4205
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8383
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3030
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2132
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 68
allele frequency: 6.559907389542736e-3
allele num: 10366
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.007880647295915e-5
allele num: 66492
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.053268765133172e-4
allele num: 11564
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

FS
type: SiteQuality
SIO_000300: 6.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.46e-1

QD
type: SiteQuality
SIO_000300: 1.313e1

DP
type: SiteQuality
SIO_000300: 1.994344e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.245e0

GenotypeQuality
all individuals: 2132
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22567
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5071
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3030
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8383
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3677
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10781
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4205
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.007880647295915e-5
allele num: 66492
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.46e0

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.245e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 1.994344e6

QD
type: SiteQuality
SIO_000300: 1.313e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.46e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66404
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.2266500622665e-5
allele num: 16060
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.42e-1

DP
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.986e1

QD
type: SiteQuality
SIO_000300: 1.165e1

FS
type: SiteQuality
SIO_000300: 8.317e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15974
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.507386192342478e-5
allele num: 66340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.782e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.987e1

FS
type: SiteQuality
SIO_000300: 9.603999999999999e0

QD
type: SiteQuality
SIO_000300: 1.359e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.02e-1

DP
type: SiteQuality
SIO_000300: 1.980102e6

VQSLOD
type: SiteQuality
SIO_000300: -1.68e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.900418091980236e-4
allele num: 15786
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.973796e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.465e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 9.621e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.994e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.365e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160092807424594e-4
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66226
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.334726973267453e-5
allele num: 15786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.973796e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.96e-1

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.365e1

FS
type: SiteQuality
SIO_000300: 9.621e0

BaseQRankSum
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SIO_000300: -3.465e0

ReadPosRankSum
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SIO_000300: 1.37e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.994e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.961938395134393e-4
allele num: 10194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65840
num of homozygotes: 0

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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QD
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ClippingRankSum
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BaseQRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.950894e6

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65686
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

Other
type: Population
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allele frequency: 1.133786848072562e-3
allele num: 882
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South Asian
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allele frequency: 0.0e0
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African
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.33e0

ReadPosRankSum
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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DP
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QD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 6.073489219556636e-4
allele num: 6586
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Other
type: Population
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European (Non-Finnish)
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allele count: 9
allele frequency: 1.372537058500579e-4
allele num: 65572
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African
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Latino
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East Asian
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MQ
type: SiteQuality
SIO_000300: 5.983e1

InbreedingCoeff
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ClippingRankSum
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FS
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DP
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VQSLOD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10110
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11496
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525041176111755e-5
allele num: 65572
num of homozygotes: 0

Other
type: Population
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MQRankSum
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SIO_000300: 1.69e-1

VQSLOD
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SIO_000300: 4.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.629999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.041e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.68e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.21e1

DP
type: SiteQuality
SIO_000300: 1.933697e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10697
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.926543577526305e-5
allele num: 10074
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.371e0

MQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

QD
type: SiteQuality
SIO_000300: 2.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.749e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.927621e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.542e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.72e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10060
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166044776119403e-4
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.587e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 1.508e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.749e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

DP
type: SiteQuality
SIO_000300: 1.924229e6

GenotypeQuality
all individuals: 10695
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2123
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variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.608034083992696e-4
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10060
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.51e-1

FS
type: SiteQuality
SIO_000300: 4.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.7e-2

MQ
type: SiteQuality
SIO_000300: 5.906e1

QD
type: SiteQuality
SIO_000300: 1.38e1

DP
type: SiteQuality
SIO_000300: 1.91976e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.095e0

MQRankSum
type: SiteQuality
SIO_000300: 4.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 109
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GenotypeQuality
all individuals: 498
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.334267040149393e-4
allele num: 8568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10060
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.79e0

VQSLOD
type: SiteQuality
SIO_000300: -2.3e-3

QD
type: SiteQuality
SIO_000300: 1.38e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.97e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.095e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.51e-1

DP
type: SiteQuality
SIO_000300: 1.91976e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.552843256001739e-5
allele num: 64398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12800
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.133e0

FS
type: SiteQuality
SIO_000300: 9.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.878042e6

QD
type: SiteQuality
SIO_000300: 1.354e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3011
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.03498240529911e-4
allele num: 9662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12348
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.85e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.9e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.93e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.607e1

FS
type: SiteQuality
SIO_000300: 7.174e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.868719e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64044
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.747946163258172e-4
allele num: 11442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.694e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.454e1

DP
type: SiteQuality
SIO_000300: 1.867759e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3008
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GenotypeQuality
all individuals: 120
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.564015139666552e-5
allele num: 63938
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.765e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.493e0

QD
type: SiteQuality
SIO_000300: 1.632e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.863096e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.79e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.57153633392004e-5
allele num: 63632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

QD
type: SiteQuality
SIO_000300: 8.449999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.4e0

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 1.853748e6

MQRankSum
type: SiteQuality
SIO_000300: 2.91e-1

FS
type: SiteQuality
SIO_000300: 6.555e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11744
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.576590780097118e-5
allele num: 63428
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.528e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.6e-2

QD
type: SiteQuality
SIO_000300: 1.262e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

DP
type: SiteQuality
SIO_000300: 1.847786e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.971828458639871e-5
allele num: 11146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.836403e6

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

QD
type: SiteQuality
SIO_000300: 1.19e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.61134386077989e-5
allele num: 62060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.29e-1

FS
type: SiteQuality
SIO_000300: 9.654e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

QD
type: SiteQuality
SIO_000300: 2.958e1

DP
type: SiteQuality
SIO_000300: 1.821537e6

VQSLOD
type: SiteQuality
SIO_000300: -1.896e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.618856439810918e-5
allele num: 61772
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 1.411e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.815961e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8720
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.632333257157781e-5
allele num: 61262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.867e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.049e0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.34e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.31535077564251e-4
allele num: 8638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61028
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.762e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.47e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

DP
type: SiteQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 1
allele frequency: 1.165501165501166e-4
allele num: 8580
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.558e0

BaseQRankSum
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.862e1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3335
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.153250518962734e-4
allele num: 60698
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.538461538461539e-4
allele num: 6500
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.781238e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.149e0

VQSLOD
type: SiteQuality
SIO_000300: 7.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: -3.48e-1

FS
type: SiteQuality
SIO_000300: 4.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

QD
type: SiteQuality
SIO_000300: 1.074e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.648804616652927e-5
allele num: 60650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9018
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.8e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.234e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.07e0

QD
type: SiteQuality
SIO_000300: 1.007e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.231e0

DP
type: SiteQuality
SIO_000300: 1.779609e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.180358829084042e-4
allele num: 8472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8990
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.072e0

MQRankSum
type: SiteQuality
SIO_000300: -6.19e-1

MQ
type: SiteQuality
SIO_000300: 5.899e1

VQSLOD
type: SiteQuality
SIO_000300: -1.335e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.744e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

QD
type: SiteQuality
SIO_000300: 8.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e0

DP
type: SiteQuality
SIO_000300: 1.772071e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8956
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.81811611659841e-4
allele num: 8302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11310
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.222493887530562e-4
allele num: 8180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.668001067520683e-5
allele num: 59952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.354e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

DP
type: SiteQuality
SIO_000300: 1.738568e6

FS
type: SiteQuality
SIO_000300: 3.225e0

MQRankSum
type: SiteQuality
SIO_000300: -1.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 179

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8954
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

African
type: Population
allele count: 153
allele frequency: 1.845151953690304e-2
allele num: 8292
num of homozygotes: 1

Latino
type: Population
allele count: 18
allele frequency: 1.590106007067138e-3
allele num: 11320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.336668000533546e-5
allele num: 59976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.767e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.43e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.29e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

DP
type: SiteQuality
SIO_000300: 1.738899e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8190
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8954
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.667055646317474e-5
allele num: 59986
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.487e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.02e0

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 5.91e-1

QD
type: SiteQuality
SIO_000300: 9.1e0

FS
type: SiteQuality
SIO_000300: 8.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.739473e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5236
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.030927835051546e-4
allele num: 9700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6818
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 52066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7026
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.45e1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

ClippingRankSum
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SIO_000300: -1.143e0

DP
type: SiteQuality
SIO_000300: 1.132393e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.03e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6770
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 5.803156917363046e-5
allele num: 51696
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9600
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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MQRankSum
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FS
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.940391182862465e-5
allele num: 51536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6926
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6724
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: 1.21e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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MQ
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SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: -3.91e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.115138e6

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5764
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4322
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7660
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.304572271386431e-5
allele num: 43392
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5576
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e0

QD
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ClippingRankSum
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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FS
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SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 2.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 43392
num of homozygotes: 0

East Asian
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allele frequency: 1.734906315058987e-4
allele num: 5764
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4322
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQRankSum
type: SiteQuality
SIO_000300: 2.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.38e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 8.65989e5

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.33e-2

QD
type: SiteQuality
SIO_000300: 1.388e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5008
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4834
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.298013245033112e-5
allele num: 37750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3814
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.27384e5

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.35e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-2

MQ
type: SiteQuality
SIO_000300: 5.861e1

VQSLOD
type: SiteQuality
SIO_000300: -5.515e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-2

FS
type: SiteQuality
SIO_000300: 2.076e0

QD
type: SiteQuality
SIO_000300: 1.074e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.025e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 33782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4496
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.929012345679012e-4
allele num: 5184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3484
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4384
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 3.026817603971185e-5
allele num: 33038
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5720
num of homozygotes: 0

DP
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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FS
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ClippingRankSum
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ReadPosRankSum
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MQ
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MQRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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African
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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DP
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MQ
type: SiteQuality
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QD
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FS
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 3734
num of homozygotes: 0

South Asian
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East Asian
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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Other
type: Population
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DP
type: SiteQuality
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MQRankSum
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QD
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MQ
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BaseQRankSum
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FS
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 2.097315436241611e-4
allele num: 4768
num of homozygotes: 0

East Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele num: 340
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South Asian
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VQSLOD
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FS
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ClippingRankSum
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InbreedingCoeff
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DP
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MQRankSum
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MQ
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QD
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 21244
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2218
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3374
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2708
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.910360884749709e-4
allele num: 3436
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.317e0

MQ
type: SiteQuality
SIO_000300: 5.811e1

FS
type: SiteQuality
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DP
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SIO_000300: 4.65566e5

InbreedingCoeff
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SIO_000300: -3.07e-2

MQRankSum
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SIO_000300: 6.11e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.432e0

QD
type: SiteQuality
SIO_000300: 2.093e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 5.303351718285957e-5
allele num: 18856
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1990
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2884
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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South Asian
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allele num: 3092
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East Asian
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allele frequency: 0.0e0
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African
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allele num: 2428
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.357e0

ClippingRankSum
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SIO_000300: 7.54e-1

MQRankSum
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DP
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SIO_000300: 4.3572e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -3.42e-2

BaseQRankSum
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SIO_000300: -2.161e0

VQSLOD
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SIO_000300: -2.678e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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Latino
type: Population
allele count: 1
allele frequency: 7.473841554559044e-4
allele num: 1338
num of homozygotes: 0

European (Non-Finnish)
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allele count: 15
allele frequency: 1.442307692307692e-3
allele num: 10400
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 7.716049382716049e-4
allele num: 1296
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African
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allele count: 2
allele frequency: 1.644736842105263e-3
allele num: 1216
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1928
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European (Finnish)
type: Population
allele count: 8
allele frequency: 9.302325581395349e-3
allele num: 860
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.45e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
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VQSLOD
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QD
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ReadPosRankSum
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MQRankSum
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DP
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FS
type: SiteQuality
SIO_000300: 1.1157e1

BaseQRankSum
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SIO_000300: -1.92e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.99000999000999e-5
allele num: 10010
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1022
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.16e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

MQ
type: SiteQuality
SIO_000300: 5.866e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

QD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: -3.77e-1

DP
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SIO_000300: 3.30822e5

MQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.030869212022746e-4
allele num: 9848
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1188
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.19e-2

FS
type: SiteQuality
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DP
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
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MQ
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VQSLOD
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BaseQRankSum
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SIO_000300: -8.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

East Asian
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allele frequency: 9.689922480620155e-4
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African
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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Latino
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FS
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MQRankSum
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QD
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ReadPosRankSum
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DP
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MQ
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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BaseQRankSum
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FS
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ClippingRankSum
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QD
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MQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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African
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MQRankSum
type: SiteQuality
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BaseQRankSum
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FS
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ClippingRankSum
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DP
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MQ
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QD
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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num of homozygotes: 0

Latino
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South Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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QD
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InbreedingCoeff
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VQSLOD
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DP
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FS
type: SiteQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 4608
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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FS
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QD
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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MQ
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BaseQRankSum
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DP
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SIO_000300: 2.3977e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 1168
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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InbreedingCoeff
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SIO_000300: -9.039999999999999e-2

FS
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BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ClippingRankSum
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QD
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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SIO_000300: 5.5e-1

FS
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SIO_000300: 1.718e0

ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: -9.719999999999999e-2

QD
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: NaN
allele num: 0
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Other
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allele frequency: NaN
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: NaN
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South Asian
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allele frequency: NaN
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Latino
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.132e-1

DP
type: SiteQuality
SIO_000300: 5.805e3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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allele frequency: NaN
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South Asian
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African
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East Asian
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allele frequency: NaN
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European (Finnish)
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allele frequency: NaN
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European (Non-Finnish)
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allele frequency: NaN
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QD
type: SiteQuality
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MQ
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InbreedingCoeff
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VQSLOD
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DP
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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Latino
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
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allele frequency: NaN
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European (Non-Finnish)
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allele frequency: NaN
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African
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allele frequency: NaN
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European (Finnish)
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allele frequency: NaN
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Other
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BaseQRankSum
type: SiteQuality
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VQSLOD
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MQ
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DP
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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Latino
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Other
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South Asian
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QD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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FS
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DP
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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South Asian
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allele frequency: 1.344086021505376e-4
allele num: 7440
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BaseQRankSum
type: SiteQuality
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VQSLOD
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MQRankSum
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QD
type: SiteQuality
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DP
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FS
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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European (Non-Finnish)
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East Asian
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African
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Other
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European (Finnish)
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South Asian
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DP
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MQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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FS
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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East Asian
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African
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European (Non-Finnish)
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QD
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MQRankSum
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 1.606e1

VQSLOD
type: SiteQuality
SIO_000300: -1.766e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.72e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.53e-1

DP
type: SiteQuality
SIO_000300: 1.62946e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
all individuals: 78
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 6.756756756756757e-3
allele num: 148
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.74e-2

DP
type: SiteQuality
SIO_000300: 1.63401e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -9.2e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.819e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

VQSLOD
type: SiteQuality
SIO_000300: -1.434e0

QD
type: SiteQuality
SIO_000300: 1.518e1

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 943
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2534
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.669514148424986e-4
allele num: 7492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.17e-1

FS
type: SiteQuality
SIO_000300: 2.339e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

VQSLOD
type: SiteQuality
SIO_000300: -6.486e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.49e-1

DP
type: SiteQuality
SIO_000300: 1.65985e5