15-58285028-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285028
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285028
    reference: chr 15
allele count: 10
allele frequency: 8.237775141689732e-5
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.510-12C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*659-12C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.397-12C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.192-12C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+115C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.622-12C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.685-12C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.598-12C>T
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10283
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6074
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8148
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8895
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4332
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3909
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7819
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2548
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

15-58285033-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285033
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285033
    reference: chr 15
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.598-17C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.510-17C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.685-17C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.622-17C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.397-17C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*659-17C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.192-17C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+110C>T
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6075
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

15-58285037-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285037
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285037
    reference: chr 15
allele count: 8
allele frequency: 6.590763045591603e-5
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+106C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.685-21C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.397-21C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.622-21C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.192-21C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.510-21C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.598-21C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*659-21C>A
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6074
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2502
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3909
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS

15-58285038-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285038
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285038
    reference: chr 15
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.397-22T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*659-22T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.685-22T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.192-22T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+105T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.510-22T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.622-22T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.598-22T>C
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6074
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7801
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4336
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31003
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

15-58285041-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285041
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285041
    reference: chr 15
allele count: 9
allele frequency: 7.414486258485467e-5
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.510-25G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.397-25G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.192-25G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.685-25G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*659-25G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+102G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.598-25G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.622-25G>A
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4041
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6075
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31006
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4214
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

15-58285042-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285042
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285042
    reference: chr 15
allele count: 3
allele frequency: 2.471454698235381e-5
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.397-26C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.685-26C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+101C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.510-26C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*659-26C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.192-26C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.622-26C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.598-26C>T
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6074
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3909
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4334
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

15-58285051-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285051
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285051
    reference: chr 15
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.685-35C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.510-35C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.192-35C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*659-35C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+92C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.397-35C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.598-35C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.622-35C>T
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6071
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8941
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7748
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4215
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31009
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP

15-58285059-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285059
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285059
    reference: chr 15
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.685-43T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*659-43T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+84T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.510-43T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.598-43T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.622-43T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.397-43T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.192-43T>A
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6070
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7763
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2504
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3912
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

15-58285060-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285060
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285060
    reference: chr 15
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.685-44A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.192-44A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.397-44A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.598-44A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+83A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*659-44A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.510-44A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.622-44A>G
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6070
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2565
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31009
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

15-58285063-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285063
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285063
    reference: chr 15
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.397-47T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+80T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.685-47T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.598-47T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.510-47T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.622-47T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*659-47T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.192-47T>C
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8941
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4041
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4202
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7723
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

15-58285067-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285067
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285067
    reference: chr 15
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.397-51A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+76A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.598-51A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.510-51A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.622-51A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.685-51A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.192-51A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*659-51A>G
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4042
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7737
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2572
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-58285068-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285068
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285068
    reference: chr 15
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.397-52C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.598-52C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*659-52C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.622-52C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.192-52C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.685-52C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.510-52C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+75C>A
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4042
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2570
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3912
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

15-58285095-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285095
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285095
    reference: chr 15
allele count: 2
allele frequency: 1.647636465490254e-5
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+48G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.621+48G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.396+48G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.684+48G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.191+48G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.509+48G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.597+48G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*658+48G>A
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8652
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

15-58285096-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285096
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285096
    reference: chr 15
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.684+47G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.597+47G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.621+47G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.509+47G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+47G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.191+47G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*658+47G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.396+47G>A
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9790
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS

15-58285101-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285101
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285101
    reference: chr 15
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+42C>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.509+42C>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*658+42C>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.396+42C>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.597+42C>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.621+42C>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.684+42C>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.191+42C>G
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8644
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3135
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ

15-58285102-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285102
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285103
    reference: chr 15
allele count: 691
allele frequency: 5.692021285358903e-3
allele num: 121398
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.621+40dupT
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+40dupT
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*658+40dupT
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.597+40dupT
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.509+40dupT
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.684+40dupT
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.191+40dupT
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.396+40dupT
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26040
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6225
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 13686
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 9.75e1
  variant carriers: 528
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8641
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 25
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

15-58285103-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285103
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285103
    reference: chr 15
allele count: 3
allele frequency: 2.498625755834291e-5
allele num: 120066
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.621+40T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.191+40T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.684+40T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.597+40T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+40T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.396+40T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.509+40T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*658+40T>C
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

15-58285120-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285120
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285120
    reference: chr 15
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.509+23G>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.597+23G>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+23G>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.396+23G>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*658+23G>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.621+23G>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.191+23G>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.684+23G>C
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6321
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32902
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2526
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9320
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3165
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

15-58285120-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285120
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285120
    reference: chr 15
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+23G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.191+23G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*658+23G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.509+23G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.684+23G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.396+23G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.621+23G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.597+23G>A
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2526
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32902
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9320
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

15-58285124-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285124
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285124
    reference: chr 15
allele count: 103
allele frequency: 8.484628818082968e-4
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*658+19G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.396+19G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+19G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.509+19G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.621+19G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.597+19G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.684+19G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.191+19G>A
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26323
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 9.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6323
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13816
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8714
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32909
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2523
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

15-58285125-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285125
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285125
    reference: chr 15
allele count: 3
allele frequency: 2.471291826614165e-5
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.597+18C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*658+18C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.396+18C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.684+18C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.191+18C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+18C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.509+18C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.621+18C>T
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13845
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1991
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9233
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS

15-58285128-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285128
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285128
    reference: chr 15
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+15C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.597+15C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.509+15C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.621+15C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.684+15C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.396+15C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.191+15C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*658+15C>T
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32994
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3169
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1990
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

15-58285130-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285130
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285130
    reference: chr 15
allele count: 5
allele frequency: 4.118887570844866e-5
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.396+13G>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.621+13G>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.684+13G>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.509+13G>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.191+13G>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*658+13G>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+13G>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.597+13G>C
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6357
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3168
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2528
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum

15-58285131-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285131
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285131
    reference: chr 15
allele count: 33
allele frequency: 2.718465796757612e-4
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.396+12G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.509+12G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+12G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.191+12G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.621+12G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*658+12G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.597+12G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.684+12G>A
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 9.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 6350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26371
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1990
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8729
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3169
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32994
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP

15-58285132-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285132
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285132
    reference: chr 15
allele count: 11
allele frequency: 9.061552655858706e-5
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*658+11C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.396+11C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.597+11C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.191+11C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.684+11C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.509+11C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.621+11C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.684+11C>T
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3172
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33022
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

15-58285145-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285145
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285145
    reference: chr 15
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.189G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.595G>A
  hgvsp: ENSP00000453600.1:p.Glu199Lys
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.619G>A
  hgvsp: ENSP00000438296.1:p.Glu207Lys
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.394G>A
  hgvsp: ENSP00000453408.1:p.Glu132Lys
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.682G>A
  hgvsp: ENSP00000309623.3:p.Glu228Lys
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*656G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.507G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.682G>A
  hgvsp: ENSP00000249750.4:p.Glu228Lys
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1990
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33038
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu228Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

15-58285154-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285154
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285154
    reference: chr 15
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.586C>G
  hgvsp: ENSP00000453600.1:p.Leu196Val
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.498C>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.385C>G
  hgvsp: ENSP00000453408.1:p.Leu129Val
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.673C>G
  hgvsp: ENSP00000309623.3:p.Leu225Val
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*647C>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.610C>G
  hgvsp: ENSP00000438296.1:p.Leu204Val
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.673C>G
  hgvsp: ENSP00000249750.4:p.Leu225Val
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.180C>G
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8736
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1988
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu225Val
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

15-58285155-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285155
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285155
    reference: chr 15
allele count: 66
allele frequency: 5.437110752298415e-4
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.179C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.672C>A
  hgvsp: ENST00000347587.3:c.672C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.384C>A
  hgvsp: ENST00000559517.1:c.384C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.672C>A
  hgvsp: ENST00000249750.4:c.672C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.585C>A
  hgvsp: ENST00000558231.1:c.585C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*646C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.609C>A
  hgvsp: ENST00000537372.1:c.609C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.497C>A
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 9.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3171
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala224Ala
num of homozygotes: 3
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

15-58285156-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285156
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285156
    reference: chr 15
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.608C>A
  hgvsp: ENSP00000438296.1:p.Ala203Asp
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.383C>A
  hgvsp: ENSP00000453408.1:p.Ala128Asp
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*645C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.584C>A
  hgvsp: ENSP00000453600.1:p.Ala195Asp
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.671C>A
  hgvsp: ENSP00000309623.3:p.Ala224Asp
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.671C>A
  hgvsp: ENSP00000249750.4:p.Ala224Asp
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.178C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.496C>A
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala224Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

15-58285157-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285157
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285157
    reference: chr 15
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.177G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.670G>A
  hgvsp: ENSP00000249750.4:p.Ala224Thr
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.670G>A
  hgvsp: ENSP00000309623.3:p.Ala224Thr
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.583G>A
  hgvsp: ENSP00000453600.1:p.Ala195Thr
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*644G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.607G>A
  hgvsp: ENSP00000438296.1:p.Ala203Thr
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.382G>A
  hgvsp: ENSP00000453408.1:p.Ala128Thr
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.495G>A
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3170
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala224Thr
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS

15-58285163-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285163
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285163
    reference: chr 15
allele count: 4
allele frequency: 3.295164346321773e-5
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.376A>G
  hgvsp: ENSP00000453408.1:p.Met126Val
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.601A>G
  hgvsp: ENSP00000438296.1:p.Met201Val
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.664A>G
  hgvsp: ENSP00000309623.3:p.Met222Val
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.171A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.489A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.577A>G
  hgvsp: ENSP00000453600.1:p.Met193Val
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.664A>G
  hgvsp: ENSP00000249750.4:p.Met222Val
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*638A>G
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3163
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9166
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33086
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Met222Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

15-58285171-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285171
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285171
    reference: chr 15
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.656C>T
  hgvsp: ENSP00000249750.4:p.Ala219Val
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.569C>T
  hgvsp: ENSP00000453600.1:p.Ala190Val
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*630C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.656C>T
  hgvsp: ENSP00000309623.3:p.Ala219Val
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.163C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.368C>T
  hgvsp: ENSP00000453408.1:p.Ala123Val
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.481C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.593C>T
  hgvsp: ENSP00000438296.1:p.Ala198Val
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3159
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala219Val
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-58285174-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285174
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285174
    reference: chr 15
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.478G>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.653G>C
  hgvsp: ENSP00000249750.4:p.Ser218Thr
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.653G>C
  hgvsp: ENSP00000309623.3:p.Ser218Thr
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*627G>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.590G>C
  hgvsp: ENSP00000438296.1:p.Ser197Thr
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.566G>C
  hgvsp: ENSP00000453600.1:p.Ser189Thr
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.365G>C
  hgvsp: ENSP00000453408.1:p.Ser122Thr
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.160G>C
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2527
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser218Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

15-58285189-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285189
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285189
    reference: chr 15
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*612A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.551A>G
  hgvsp: ENSP00000453600.1:p.Glu184Gly
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.350A>G
  hgvsp: ENSP00000453408.1:p.Glu117Gly
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.638A>G
  hgvsp: ENSP00000309623.3:p.Glu213Gly
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.463A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.145A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.575A>G
  hgvsp: ENSP00000438296.1:p.Glu192Gly
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.638A>G
  hgvsp: ENSP00000249750.4:p.Glu213Gly
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8734
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33080
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2524
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu213Gly
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

15-58285190-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285190
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285190
    reference: chr 15
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.462G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.637G>A
  hgvsp: ENSP00000249750.4:p.Glu213Lys
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*611G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.550G>A
  hgvsp: ENSP00000453600.1:p.Glu184Lys
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.144G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.574G>A
  hgvsp: ENSP00000438296.1:p.Glu192Lys
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.637G>A
  hgvsp: ENSP00000309623.3:p.Glu213Lys
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.349G>A
  hgvsp: ENSP00000453408.1:p.Glu117Lys
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26404
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33088
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3156
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu213Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

15-58285207-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285207
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285207
    reference: chr 15
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.557T>A
  hgvsp: ENSP00000438296.1:p.Val186Glu
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.332T>A
  hgvsp: ENSP00000453408.1:p.Val111Glu
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.445T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.533T>A
  hgvsp: ENSP00000453600.1:p.Val178Glu
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*594T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.620T>A
  hgvsp: ENSP00000309623.3:p.Val207Glu
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.620T>A
  hgvsp: ENSP00000249750.4:p.Val207Glu
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.127T>A
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val207Glu
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

15-58285211-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285211
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285211
    reference: chr 15
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.328A>G
  hgvsp: ENSP00000453408.1:p.Thr110Ala
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.123A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.616A>G
  hgvsp: ENSP00000309623.3:p.Thr206Ala
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.553A>G
  hgvsp: ENSP00000438296.1:p.Thr185Ala
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.529A>G
  hgvsp: ENSP00000453600.1:p.Thr177Ala
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.616A>G
  hgvsp: ENSP00000249750.4:p.Thr206Ala
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.441A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*590A>G
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26371
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9160
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr206Ala
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-58285216-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285216
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285216
    reference: chr 15
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*585G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.323G>A
  hgvsp: ENSP00000453408.1:p.Gly108Asp
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.524G>A
  hgvsp: ENSP00000453600.1:p.Gly175Asp
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.436G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.118G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.548G>A
  hgvsp: ENSP00000438296.1:p.Gly183Asp
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.611G>A
  hgvsp: ENSP00000309623.3:p.Gly204Asp
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.611G>A
  hgvsp: ENSP00000249750.4:p.Gly204Asp
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26364
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13804
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8702
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly204Asp
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

15-58285219-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285219
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285219
    reference: chr 15
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.115G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.320G>A
  hgvsp: ENSP00000453408.1:p.Cys107Tyr
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*582G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.608G>A
  hgvsp: ENSP00000249750.4:p.Cys203Tyr
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.608G>A
  hgvsp: ENSP00000309623.3:p.Cys203Tyr
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.521G>A
  hgvsp: ENSP00000453600.1:p.Cys174Tyr
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.545G>A
  hgvsp: ENSP00000438296.1:p.Cys182Tyr
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.433G>A
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3141
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Cys203Tyr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

15-58285226-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285226
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285226
    reference: chr 15
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.426T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.538T>A
  hgvsp: ENSP00000438296.1:p.Leu180Met
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.514T>A
  hgvsp: ENSP00000453600.1:p.Leu172Met
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.313T>A
  hgvsp: ENSP00000453408.1:p.Leu105Met
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.601T>A
  hgvsp: ENSP00000249750.4:p.Leu201Met
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*575T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.601T>A
  hgvsp: ENSP00000309623.3:p.Leu201Met
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.108T>A
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8694
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu201Met
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

15-58285234-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285234
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285234
    reference: chr 15
allele count: 1
allele frequency: 8.24783082049421e-6
allele num: 121244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.593C>T
  hgvsp: ENSP00000309623.3:p.Ala198Val
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.530C>T
  hgvsp: ENSP00000438296.1:p.Ala177Val
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.593C>T
  hgvsp: ENSP00000249750.4:p.Ala198Val
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.305C>T
  hgvsp: ENSP00000453408.1:p.Ala102Val
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.506C>T
  hgvsp: ENSP00000453600.1:p.Ala169Val
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*567C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.100C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.418C>T
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9149
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8682
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala198Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

15-58285239-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285239
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285239
    reference: chr 15
allele count: 3
allele frequency: 2.474716644944154e-5
allele num: 121226
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.588A>G
  hgvsp: ENST00000347587.3:c.588A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.501A>G
  hgvsp: ENST00000558231.1:c.501A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*562A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.525A>G
  hgvsp: ENST00000537372.1:c.525A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.588A>G
  hgvsp: ENST00000249750.4:c.588A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.95A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.300A>G
  hgvsp: ENST00000559517.1:c.300A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.413A>G
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3129
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2492
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Lys196Lys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

15-58285257-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285257
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285257
    reference: chr 15
allele count: 1
allele frequency: 8.268836409340477e-6
allele num: 120936
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.77G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*544G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.570G>A
  hgvsp: ENST00000249750.4:c.570G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.483G>A
  hgvsp: ENST00000558231.1:c.483G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.570G>A
  hgvsp: ENST00000347587.3:c.570G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.395G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.507G>A
  hgvsp: ENST00000537372.1:c.507G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.282G>A
  hgvsp: ENST00000559517.1:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6417
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13663
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26174
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32885
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu190Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

15-58285266-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285266
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285266
    reference: chr 15
allele count: 2
allele frequency: 1.657550140891762e-5
allele num: 120660
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.561C>T
  hgvsp: ENST00000347587.3:c.561C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.273C>T
  hgvsp: ENST00000559517.1:c.273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.386C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.474C>T
  hgvsp: ENST00000558231.1:c.474C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.561C>T
  hgvsp: ENST00000249750.4:c.561C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*535C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.498C>T
  hgvsp: ENST00000537372.1:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.68C>T
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1941
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3058
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn187Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

15-58285274-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285274
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285274
    reference: chr 15
allele count: 1
allele frequency: 8.309098462816784e-6
allele num: 120350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.268-3C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.556-3C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.469-3C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.63-3C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.556-3C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.381-3C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.493-3C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*530-3C>A
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32241
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.75e1
  variant carriers: 0
hgvs: c.556-3C>A
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

15-58285277-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285277
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285277
    reference: chr 15
allele count: 1
allele frequency: 8.314210648840998e-6
allele num: 120276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.469-6T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.556-6T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.268-6T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.493-6T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*530-6T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.381-6T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.63-6T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.556-6T>A
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13322
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32083
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9097
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
hgvs: c.556-6T>A
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

15-58285279-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285279
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285280
    reference: chr 15
allele count: 1
allele frequency: 8.322237017310253e-6
allele num: 120160
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.469-9dupT
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.268-9dupT
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.63-9dupT
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.556-9dupT
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*530-9dupT
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.493-9dupT
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.556-9dupT
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.381-9dupT
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2990
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

15-58285279-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285279
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285279
    reference: chr 15
allele count: 5
allele frequency: 4.161118508655127e-5
allele num: 120160
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.556-8C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.63-8C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.469-8C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*530-8C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.493-8C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.556-8C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.268-8C>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.381-8C>A
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6300
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
hgvs: c.556-8C>A
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

15-58285290-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285290
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285290
    reference: chr 15
allele count: 3
allele frequency: 2.508025682182986e-5
allele num: 119616
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.493-19T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.268-19T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.556-19T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.63-19T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.381-19T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.556-19T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.469-19T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*530-19T>A
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5926
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12554
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3609
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2909
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9080
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

15-58285297-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285297
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285297
    reference: chr 15
allele count: 1
allele frequency: 8.381386616601851e-6
allele num: 119312
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.493-26A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.268-26A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.556-26A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.63-26A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.556-26A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.469-26A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.381-26A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*530-26A>G
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2814
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7502
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum

15-58285322-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285322
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285321
    reference: chr 15
allele count: 14
allele frequency: 1.194315060312911e-4
allele num: 117222
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.63-52delA
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.469-52delA
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*530-52delA
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.493-52delA
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.556-52delA
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.268-52delA
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.381-52delA
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.556-52delA
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10590
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5512
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6171
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13078
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10807
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2430
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2927
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5386
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1727
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: CT
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

15-58285322-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58285322
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58285322
    reference: chr 15
allele count: 1
allele frequency: 8.530821859377933e-6
allele num: 117222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.268-51G>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.556-51G>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.381-51G>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.493-51G>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.63-51G>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*530-51G>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.556-51G>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.469-51G>C
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5512
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10807
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5996
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1727
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5253
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2927
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1342
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5386
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4437
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

15-58287228-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58287228
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58287228
    reference: chr 15
allele count: 2
allele frequency: 1.648559982854976e-5
allele num: 121318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.380+48T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.555+48T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.492+48T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.267+48T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.555+48T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.468+48T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.62+48T>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*529+48T>A
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6613
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7700
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3928
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2371
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8741
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

15-58287233-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58287233
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58287233
    reference: chr 15
allele count: 2
allele frequency: 1.648396933981703e-5
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.555+43C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.62+43C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.380+43C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.267+43C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.468+43C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.555+43C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*529+43C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.492+43C>T
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7700
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

15-58287235-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58287235
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58287235
    reference: chr 15
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.492+41A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.468+41A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*529+41A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.555+41A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.555+41A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.62+41A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.267+41A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.380+41A>G
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7702
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4820
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3867
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/15-58287236-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58287236
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58287236
    reference: chr 15
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.555+40G>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.555+40G>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*529+40G>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.267+40G>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.468+40G>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.380+40G>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.62+40G>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.492+40G>T
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7702
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6613
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8851
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3866
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4821
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

15-58287240-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58287240
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58287240
    reference: chr 15
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.555+36A>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.267+36A>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*529+36A>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.380+36A>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.492+36A>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.468+36A>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.555+36A>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.62+36A>C
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4826
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

15-58287252-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58287252
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58287252
    reference: chr 15
allele count: 2
allele frequency: 1.648233917357551e-5
allele num: 121342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.555+24G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*529+24G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.267+24G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.380+24G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.468+24G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.555+24G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.492+24G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.62+24G>A
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8913
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3919
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

15-58287253-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58287253
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58287253
    reference: chr 15
allele count: 6
allele frequency: 4.944538756942956e-5
allele num: 121346
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*529+23C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.555+23C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.380+23C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.468+23C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.555+23C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.267+23C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.492+23C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.62+23C>T
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6614
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7702
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30702
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3919
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8933
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD

15-58287259-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58287259
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58287259
    reference: chr 15
allele count: 3
allele frequency: 2.47222863170386e-5
allele num: 121348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.62+17G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.468+17G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.267+17G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*529+17G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.555+17G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.380+17G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.555+17G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.492+17G>A
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8963
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30699
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3921
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS

15-58287260-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58287260
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58287260
    reference: chr 15
allele count: 8
allele frequency: 6.592175088170342e-5
allele num: 121356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.380+16C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.555+16C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.492+16C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.555+16C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*529+16C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.468+16C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.62+16C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.267+16C>T
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6616
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3921
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3863
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4831
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

15-58287262-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58287262
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58287262
    reference: chr 15
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.380+14C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.62+14C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.267+14C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.468+14C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.555+14C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.492+14C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.555+14C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*529+14C>T
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3866
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30689
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-58287273-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58287273
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58287274
    reference: chr 15
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.380+2dupT
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.555+2dupT
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.468+2dupT
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.267+2dupT
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.555+2dupT
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*529+2dupT
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.492+2dupT
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.62+2dupT
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7707
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3754
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3927
  bin: 8.25e1
  variant carriers: 0
hgvs: c.555+2dupT
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

15-58287279-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58287279
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58287279
    reference: chr 15
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.489C>T
  hgvsp: ENST00000537372.1:c.489C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.264C>T
  hgvsp: ENST00000559517.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.552C>T
  hgvsp: ENST00000347587.3:c.552C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.465C>T
  hgvsp: ENST00000558231.1:c.465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.552C>T
  hgvsp: ENST00000249750.4:c.552C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.377C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*526C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.59C>T
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7707
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8681
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2371
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3924
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile184Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

15-58287284-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58287284
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58287284
    reference: chr 15
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.484A>G
  hgvsp: ENSP00000438296.1:p.Ile162Val
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.460A>G
  hgvsp: ENSP00000453600.1:p.Ile154Val
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*521A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.259A>G
  hgvsp: ENSP00000453408.1:p.Ile87Val
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.54A>G
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.547A>G
  hgvsp: ENSP00000309623.3:p.Ile183Val
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.547A>G
  hgvsp: ENSP00000249750.4:p.Ile183Val
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.372A>G
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7707
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3926
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3864
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2219
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile183Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

15-58287294-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58287294
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58287294
    reference: chr 15
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.474G>A
  hgvsp: ENST00000537372.1:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000452850
  ensembl transcript: ENST00000561070
  gene symbol: ALDH1A2
  hgvsc: ENST00000561070.1:c.249G>A
  hgvsp: ENST00000561070.1:c.249G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.537G>A
  hgvsp: ENST00000249750.4:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.537G>A
  hgvsp: ENST00000347587.3:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.362G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.249G>A
  hgvsp: ENST00000559517.1:c.249G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.44G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*511G>A
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.450G>A
  hgvsp: ENST00000558231.1:c.450G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3752
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val179Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

15-58287297-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58287297
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58287297
    reference: chr 15
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000452850
  ensembl transcript: ENST00000561070
  gene symbol: ALDH1A2
  hgvsc: ENST00000561070.1:c.246A>C
  hgvsp: ENST00000561070.1:c.246A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.471A>C
  hgvsp: ENST00000537372.1:c.471A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*508A>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.447A>C
  hgvsp: ENST00000558231.1:c.447A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.534A>C
  hgvsp: ENST00000347587.3:c.534A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.41A>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.534A>C
  hgvsp: ENST00000249750.4:c.534A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.246A>C
  hgvsp: ENST00000559517.1:c.246A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.359A>C
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2215
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly178Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD

15-58287304-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58287304
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58287304
    reference: chr 15
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000452850
  ensembl transcript: ENST00000561070
  gene symbol: ALDH1A2
  hgvsc: ENST00000561070.1:c.239C>T
  hgvsp: ENSP00000452850.1:p.Pro80Leu
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.440C>T
  hgvsp: ENSP00000453600.1:p.Pro147Leu
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*501C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.527C>T
  hgvsp: ENSP00000249750.4:p.Pro176Leu
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.34C>T
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.464C>T
  hgvsp: ENSP00000438296.1:p.Pro155Leu
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.527C>T
  hgvsp: ENSP00000309623.3:p.Pro176Leu
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.239C>T
  hgvsp: ENSP00000453408.1:p.Pro80Leu
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.352C>T
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro176Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-58287309-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58287309
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58287309
    reference: chr 15
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000452850
  ensembl transcript: ENST00000561070
  gene symbol: ALDH1A2
  hgvsc: ENST00000561070.1:c.234T>C
  hgvsp: ENST00000561070.1:c.234T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.459T>C
  hgvsp: ENST00000537372.1:c.459T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.522T>C
  hgvsp: ENST00000347587.3:c.522T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.29T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.435T>C
  hgvsp: ENST00000558231.1:c.435T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.347T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*496T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.234T>C
  hgvsp: ENST00000559517.1:c.234T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.522T>C
  hgvsp: ENST00000249750.4:c.522T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3752
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His174His
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

15-58287320-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58287320
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58287320
    reference: chr 15
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000452850
  ensembl transcript: ENST00000561070
  gene symbol: ALDH1A2
  hgvsc: ENST00000561070.1:c.223T>C
  hgvsp: ENSP00000452850.1:p.Phe75Leu
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.448T>C
  hgvsp: ENSP00000438296.1:p.Phe150Leu
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.336T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.511T>C
  hgvsp: ENSP00000249750.4:p.Phe171Leu
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.223T>C
  hgvsp: ENSP00000453408.1:p.Phe75Leu
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.18T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.511T>C
  hgvsp: ENSP00000309623.3:p.Phe171Leu
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*485T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.424T>C
  hgvsp: ENSP00000453600.1:p.Phe142Leu
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7706
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3926
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2365
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Phe171Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

15-58287327-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58287327
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 58287327
    reference: chr 15
allele count: 1
allele frequency: 8.244974687927709e-6
allele num: 121286
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453600
  ensembl transcript: ENST00000558231
  gene symbol: ALDH1A2
  hgvsc: ENST00000558231.1:c.417T>C
  hgvsp: ENST00000558231.1:c.417T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000453408
  ensembl transcript: ENST00000559517
  gene symbol: ALDH1A2
  hgvsc: ENST00000559517.1:c.216T>C
  hgvsp: ENST00000559517.1:c.216T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000416754
  ensembl transcript: ENST00000430119
  gene symbol: ALDH1A2
  hgvsc: ENST00000430119.2:c.*478T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000249750
  ensembl transcript: ENST00000249750
  gene symbol: ALDH1A2
  hgvsc: ENST00000249750.4:c.504T>C
  hgvsp: ENST00000249750.4:c.504T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000452850
  ensembl transcript: ENST00000561070
  gene symbol: ALDH1A2
  hgvsc: ENST00000561070.1:c.216T>C
  hgvsp: ENST00000561070.1:c.216T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000438296
  ensembl transcript: ENST00000537372
  gene symbol: ALDH1A2
  hgvsc: ENST00000537372.1:c.441T>C
  hgvsp: ENST00000537372.1:c.441T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128918
  ensembl protein: ENSP00000309623
  ensembl transcript: ENST00000347587
  gene symbol: ALDH1A2
  hgvsc: ENST00000347587.3:c.504T>C
  hgvsp: ENST00000347587.3:c.504T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000560923
  gene symbol: ALDH1A2
  hgvsc: ENST00000560923.1:n.11T>C
  variant of: http://identifiers.org/hgnc/15472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128918
  ensembl transcript: ENST00000559266
  gene symbol: ALDH1A2
  hgvsc: ENST00000559266.1:n.329T>C
  variant of: http://identifiers.org/hgnc/15472
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Tyr168Tyr
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4218
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2502
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4195
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30996
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728011059270779e-4
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.994664748373947e-5
allele num: 66726
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.843936190659235e-4
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.96e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 2.640134e6

MQRankSum
type: SiteQuality
SIO_000300: -3.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.42e-1

QD
type: SiteQuality
SIO_000300: 1.412e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.262e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-3

GenotypeQuality
all individuals: 7827
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4327
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2548
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3908
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30994
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4196
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4218
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2503
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.640159e6

MQ
type: SiteQuality
SIO_000300: 5.981e1

VQSLOD
type: SiteQuality
SIO_000300: -7.811e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.67e0

MQRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

FS
type: SiteQuality
SIO_000300: 1.858e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 1.833e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.87e-1

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4330
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4213
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31003
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 7811
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4189
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2552
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.726888333653661e-4
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.246e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.747e0

MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.46e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.640607e6

FS
type: SiteQuality
SIO_000300: 1.771e0

GenotypeQuality
all individuals: 2502
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2552
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4191
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3909
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4214
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.936e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.93e-1

FS
type: SiteQuality
SIO_000300: 1.6589e1

MQRankSum
type: SiteQuality
SIO_000300: -5.34e-1

DP
type: SiteQuality
SIO_000300: 2.640669e6

QD
type: SiteQuality
SIO_000300: 1.712e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.542e0

VQSLOD
type: SiteQuality
SIO_000300: -2.082e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7786
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4338
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4190
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2502
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2550
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3909
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.04916067146283e-4
allele num: 66720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.641315e6

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.14e0

QD
type: SiteQuality
SIO_000300: 1.416e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.56e-1

GenotypeQuality
all individuals: 31
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4214
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31006
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4193
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7769
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2503
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2550
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.844e0

MQ
type: SiteQuality
SIO_000300: 5.989e1

MQRankSum
type: SiteQuality
SIO_000300: -8.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.08e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.641491e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.919999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.321e1

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4322
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3909
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4193
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2502
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2554
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.699e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

FS
type: SiteQuality
SIO_000300: 4.486e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.059e0

MQ
type: SiteQuality
SIO_000300: 5.898e1

DP
type: SiteQuality
SIO_000300: 2.641604e6

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4201
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31008
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4220
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4319
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2564
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

VQSLOD
type: SiteQuality
SIO_000300: 3.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.45e-1

DP
type: SiteQuality
SIO_000300: 2.641835e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.16e1

MQ
type: SiteQuality
SIO_000300: 5.943e1

GenotypeQuality
all individuals: 7746
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2503
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele num: 908
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Latino
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allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

South Asian
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FS
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DP
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QD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

African
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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BaseQRankSum
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MQ
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DP
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ClippingRankSum
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ReadPosRankSum
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QD
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FS
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele num: 11574
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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MQRankSum
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InbreedingCoeff
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QD
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DP
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FS
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MQ
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66726
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Other
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num of homozygotes: 0

South Asian
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Latino
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allele frequency: 0.0e0
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MQ
type: SiteQuality
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VQSLOD
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ClippingRankSum
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MQRankSum
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FS
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BaseQRankSum
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DP
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InbreedingCoeff
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SIO_000300: -2.0e-4

ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.77e-1

ReadPosRankSum
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FS
type: SiteQuality
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MQRankSum
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QD
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BaseQRankSum
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DP
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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African
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allele frequency: 9.633911368015414e-5
allele num: 10380
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66736
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South Asian
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Latino
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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MQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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DP
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QD
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FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

European (Non-Finnish)
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African
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European (Finnish)
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East Asian
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Latino
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Other
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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DP
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VQSLOD
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MQRankSum
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FS
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Latino
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Other
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South Asian
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 2.09781826900024e-4
allele num: 66736
num of homozygotes: 0

QD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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FS
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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East Asian
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African
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Other
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ReadPosRankSum
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BaseQRankSum
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MQ
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FS
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InbreedingCoeff
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DP
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MQRankSum
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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FS
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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MQ
type: SiteQuality
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VQSLOD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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Latino
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South Asian
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Other
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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MQRankSum
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ClippingRankSum
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DP
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QD
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MQ
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 5
allele frequency: 7.49243264303054e-5
allele num: 66734
num of homozygotes: 0

African
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allele count: 93
allele frequency: 8.942307692307692e-3
allele num: 10400
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele frequency: 2.591568762957844e-4
allele num: 11576
num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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FS
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

African
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allele frequency: 1.923446816695518e-4
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.103144e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

FS
type: SiteQuality
SIO_000300: 4.985e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
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Other
type: Population
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allele frequency: 0.0e0
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African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
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QD
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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ClippingRankSum
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DP
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
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East Asian
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allele frequency: 5.777675063554426e-4
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African
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European (Finnish)
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European (Non-Finnish)
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South Asian
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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MQRankSum
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DP
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VQSLOD
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QD
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MQ
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.645447461487742e-4
allele num: 66732
num of homozygotes: 0

East Asian
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allele num: 8654
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Latino
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allele frequency: 8.640055296353897e-5
allele num: 11574
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African
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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Other
type: Population
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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QD
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VQSLOD
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FS
type: SiteQuality
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MQ
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MQRankSum
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 1.728011059270779e-4
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498576352465158e-5
allele num: 66730
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European (Finnish)
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African
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East Asian
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South Asian
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Other
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allele num: 908
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DP
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FS
type: SiteQuality
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ReadPosRankSum
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QD
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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African
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East Asian
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European (Non-Finnish)
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allele num: 66732
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Other
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European (Finnish)
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FS
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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DP
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VQSLOD
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MQ
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MQRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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European (Non-Finnish)
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Latino
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InbreedingCoeff
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MQRankSum
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QD
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VQSLOD
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MQ
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FS
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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MQ
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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FS
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MQRankSum
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QD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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East Asian
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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FS
type: SiteQuality
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QD
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ReadPosRankSum
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VQSLOD
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DP
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MQRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16510
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Other
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East Asian
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European (Non-Finnish)
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African
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European (Finnish)
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Latino
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DP
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MQ
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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ClippingRankSum
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BaseQRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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African
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Other
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Latino
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BaseQRankSum
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FS
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MQ
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DP
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VQSLOD
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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Latino
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South Asian
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Other
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European (Finnish)
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MQ
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QD
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FS
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MQRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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South Asian
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European (Non-Finnish)
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Other
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African
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East Asian
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ClippingRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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FS
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DP
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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African
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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DP
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QD
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FS
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MQ
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Non-Finnish)
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African
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East Asian
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European (Finnish)
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MQ
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QD
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FS
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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VQSLOD
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FS
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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DP
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MQRankSum
type: SiteQuality
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MQ
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

FS
type: SiteQuality
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MQRankSum
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QD
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MQ
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ClippingRankSum
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DP
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

East Asian
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allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.09043e6

MQ
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8652
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 2.090131e6

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.066e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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BaseQRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
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SIO_000300: 2.72e0

ClippingRankSum
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SIO_000300: -2.548e0

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.089167e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499745043342632e-5
allele num: 66678
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

African
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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DP
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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African
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.818181818181818e-4
allele num: 16500
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BaseQRankSum
type: SiteQuality
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MQ
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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FS
type: SiteQuality
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ClippingRankSum
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QD
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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East Asian
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Other
type: Population
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Latino
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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MQ
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VQSLOD
type: SiteQuality
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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num of homozygotes: 0

Latino
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Other
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South Asian
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European (Finnish)
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African
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East Asian
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DP
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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FS
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MQRankSum
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ReadPosRankSum
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QD
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MQ
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510209012927389e-5
allele num: 66216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.118e0

QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
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VQSLOD
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SIO_000300: 6.34e-1

MQRankSum
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SIO_000300: -5.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.431e0

DP
type: SiteQuality
SIO_000300: 2.063462e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.792401096748923e-5
allele num: 10212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.05935e6

MQ
type: SiteQuality
SIO_000300: 5.919e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
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ReadPosRankSum
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SIO_000300: 5.12e-1

MQRankSum
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SIO_000300: 6.4e-2

BaseQRankSum
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SIO_000300: -1.021e0

QD
type: SiteQuality
SIO_000300: 1.39e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.78e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51267622678042e-5
allele num: 66108
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 1.075e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.19e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.743e0

FS
type: SiteQuality
SIO_000300: 2.364e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 2.055694e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.02535245356084e-5
allele num: 66108
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.942907592701589e-4
allele num: 10194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.58e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.743e0

QD
type: SiteQuality
SIO_000300: 1.075e1

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

FS
type: SiteQuality
SIO_000300: 2.364e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.19e-1

DP
type: SiteQuality
SIO_000300: 2.055694e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 85
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.759324419422942e-4
allele num: 11368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519849230956289e-5
allele num: 65796
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

VQSLOD
type: SiteQuality
SIO_000300: 7.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.381e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.012975e6

QD
type: SiteQuality
SIO_000300: 1.38e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.942e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65628
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.178411501296253e-4
allele num: 8486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10064
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 14
allele frequency: 1.689596910451364e-3
allele num: 8286
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64494
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
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QD
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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MQ
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MQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64494
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16136
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.206854936036688e-4
allele num: 8286
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998141152485459e-5
allele num: 66708
num of homozygotes: 0

Other
type: Population
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South Asian
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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QD
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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DP
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MQRankSum
type: SiteQuality
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ClippingRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.82e-1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -6.859e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
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DP
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SIO_000300: 2.952242e6

BaseQRankSum
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SIO_000300: -1.48e-1

MQ
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SIO_000300: 5.911e1

QD
type: SiteQuality
SIO_000300: 1.434e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
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SIO_000300: 9.64e-1

DP
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InbreedingCoeff
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ClippingRankSum
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MQ
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SIO_000300: 5.935e1

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -3.0e-4

BaseQRankSum
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SIO_000300: -2.538e0

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.2568e1

ReadPosRankSum
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VQSLOD
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QD
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MQ
type: SiteQuality
SIO_000300: 5.932e1

DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.843e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.124e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.897e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.952857e6

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997781641585227e-5
allele num: 66716
num of homozygotes: 0

Other
type: Population
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allele num: 908
num of homozygotes: 0

South Asian
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allele count: 4
allele frequency: 2.42306760358614e-4
allele num: 16508
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.91e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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East Asian
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South Asian
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European (Non-Finnish)
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allele count: 3
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allele num: 66714
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Other
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African
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MQ
type: SiteQuality
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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QD
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DP
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66720
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South Asian
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Latino
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East Asian
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allele num: 8654
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African
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Other
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QD
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VQSLOD
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FS
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Latino
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East Asian
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African
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European (Non-Finnish)
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Other
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South Asian
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InbreedingCoeff
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FS
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DP
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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MQ
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
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Latino
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
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allele num: 66722
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East Asian
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QD
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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MQRankSum
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ClippingRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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QD
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ClippingRankSum
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VQSLOD
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MQ
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DP
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BaseQRankSum
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FS
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

South Asian
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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DP
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FS
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8654
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South Asian
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Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.003e0

DP
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BaseQRankSum
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MQRankSum
type: SiteQuality
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QD
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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African
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allele num: 10404
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Latino
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European (Non-Finnish)
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Other
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ClippingRankSum
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MQ
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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FS
type: SiteQuality
SIO_000300: 3.84e-1

DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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European (Non-Finnish)
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Latino
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Other
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African
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East Asian
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MQRankSum
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VQSLOD
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FS
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ReadPosRankSum
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QD
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DP
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BaseQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
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East Asian
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Latino
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Other
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European (Non-Finnish)
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DP
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ReadPosRankSum
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MQ
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InbreedingCoeff
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FS
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ClippingRankSum
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QD
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BaseQRankSum
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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South Asian
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Other
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European (Non-Finnish)
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East Asian
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Latino
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DP
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MQ
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InbreedingCoeff
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ClippingRankSum
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QD
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MQRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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