11-72422238-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422238
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422238
    reference: chr 11
allele count: 1
allele frequency: 9.474900987284683e-6
allele num: 105542
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.373-52G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1093-52G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.358-52G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1093-52G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.358-52G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1093-52G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.358-52G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1430-52G>C
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10695
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15772
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2687
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3269
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4928
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3405
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7377
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

11-72422238-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422238
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422238
    reference: chr 11
allele count: 1
allele frequency: 9.474900987284683e-6
allele num: 105542
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.358-52G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1093-52G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.373-52G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.358-52G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.358-52G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1093-52G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1093-52G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1430-52G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15772
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10695
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7377
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3269
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2687
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD

11-72422437-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422437
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422437
    reference: chr 11
allele count: 2
allele frequency: 1.651991475723985e-5
allele num: 121066
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.372+38A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1092+38A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.357+38A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1092+38A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.357+38A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1092+38A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.357+38A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1429+38A>G
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8482
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7722
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13484
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3366
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

11-72422442-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422442
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422442
    reference: chr 11
allele count: 1
allele frequency: 8.262141216517673e-6
allele num: 121034
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1092+33G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.357+33G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1429+33G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.357+33G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1092+33G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1092+33G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.357+33G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.372+33G>C
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2994
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13489
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

11-72422442-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422442
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422442
    reference: chr 11
allele count: 52
allele frequency: 4.29631343258919e-4
allele num: 121034
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.357+33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.357+33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1429+33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.357+33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1092+33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1092+33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1092+33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.372+33G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5325
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8477
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13958
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6143
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14340
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2994
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13489
  bin: 9.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3339
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

11-72422446-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422446
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422446
    reference: chr 11
allele count: 1
allele frequency: 8.257911078813503e-6
allele num: 121096
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1092+29C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1429+29C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1092+29C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.357+29C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1092+29C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.372+29C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.357+29C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.357+29C>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13976
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5322
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8470
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3350
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5037
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

11-72422447-G-GTCGCGTCAGGACTGATGCAGGCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422447
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422470
    reference: chr 11
allele count: 1
allele frequency: 8.258320257659592e-6
allele num: 121090
alternate allele: GTCGCGTCAGGACTGATGCAGGCC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14548
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7729
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2999
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5029
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3350
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD

11-72422450-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422450
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422450
    reference: chr 11
allele count: 1
allele frequency: 8.256002113536541e-6
allele num: 121124
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1429+25C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.357+25C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.372+25C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.357+25C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1092+25C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.357+25C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1092+25C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1092+25C>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7757
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4158
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ

11-72422451-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422451
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422451
    reference: chr 11
allele count: 1
allele frequency: 8.25722920416825e-6
allele num: 121106
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1092+24G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1092+24G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.357+24G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.357+24G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1429+24G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1092+24G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.357+24G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.372+24G>C
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3346
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5013
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

11-72422451-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422451
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422451
    reference: chr 11
allele count: 1
allele frequency: 8.25722920416825e-6
allele num: 121106
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.372+24G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.357+24G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.357+24G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.357+24G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1092+24G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1092+24G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1092+24G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1429+24G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14014
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8476
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20934
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13454
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5013
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: DP

11-72422452-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422452
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422452
    reference: chr 11
allele count: 1
allele frequency: 8.254502831294471e-6
allele num: 121146
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.357+23C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1429+23C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.357+23C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.357+23C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.372+23C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1092+23C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1092+23C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1092+23C>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3352
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21142
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4157
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/11-72422459-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422459
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422459
    reference: chr 11
allele count: 1
allele frequency: 8.251778258214646e-6
allele num: 121186
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1092+16G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1092+16G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1092+16G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1429+16G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.357+16G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.357+16G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.372+16G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.357+16G>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4155
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2994
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3354
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP

11-72422460-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422460
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422460
    reference: chr 11
allele count: 6
allele frequency: 4.950658437572197e-5
allele num: 121196
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1092+15A>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.357+15A>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1092+15A>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.372+15A>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.357+15A>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1092+15A>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1429+15A>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.357+15A>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8474
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14032
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2994
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21497
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13459
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

11-72422470-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422470
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422470
    reference: chr 11
allele count: 3
allele frequency: 2.474757473767571e-5
allele num: 121224
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.357+5G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1092+5G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.357+5G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1092+5G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.372+5G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.357+5G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1092+5G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1429+5G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6604
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5025
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21648
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
hgvs: c.1092+5G>A
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ

11-72422494-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422494
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422494
    reference: chr 11
allele count: 746
allele frequency: 6.154099983501073e-3
allele num: 121220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.338G>A
  hgvsp: ENSP00000392264.1:p.Arg113Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.353G>A
  hgvsp: ENSP00000377230.3:p.Arg118Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.338G>A
  hgvsp: ENSP00000403127.1:p.Arg113Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1073G>A
  hgvsp: ENSP00000377233.3:p.Arg358Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.338G>A
  hgvsp: ENSP00000335506.8:p.Arg113Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1410G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1073G>A
  hgvsp: ENSP00000352332.5:p.Arg358Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1073G>A
  hgvsp: ENSP00000390461.2:p.Arg358Gln
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15066
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8432
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 14018
  bin: 3.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 4.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 6.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 5.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 5284
  bin: 4.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 9.75e1
  variant carriers: 357
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 6.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.75e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 13713
  bin: 9.75e1
  variant carriers: 724
genotype quality: GenotypeQuality
  all individuals: 4113
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2969
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3337
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg358Gln
num of homozygotes: 21
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

11-72422495-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422495
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422495
    reference: chr 11
allele count: 1
allele frequency: 8.249872126982032e-6
allele num: 121214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1409C>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.337C>A
  hgvsp: ENST00000429686.1:c.337C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.337C>A
  hgvsp: ENST00000426523.1:c.337C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1072C>A
  hgvsp: ENST00000393609.3:c.1072C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.337C>A
  hgvsp: ENST00000334211.8:c.337C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1072C>A
  hgvsp: ENST00000359373.5:c.1072C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.352C>A
  hgvsp: ENST00000393605.3:c.352C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1072C>A
  hgvsp: ENST00000455638.2:c.1072C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15229
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14155
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21905
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7852
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg358Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

11-72422496-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422496
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422496
    reference: chr 11
allele count: 1
allele frequency: 8.250552787036732e-6
allele num: 121204
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.336G>C
  hgvsp: ENST00000429686.1:c.336G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1071G>C
  hgvsp: ENST00000455638.2:c.1071G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.336G>C
  hgvsp: ENST00000334211.8:c.336G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1071G>C
  hgvsp: ENST00000393609.3:c.1071G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.351G>C
  hgvsp: ENST00000393605.3:c.351G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1071G>C
  hgvsp: ENST00000359373.5:c.1071G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.336G>C
  hgvsp: ENST00000426523.1:c.336G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1408G>C
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4149
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu357Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

11-72422509-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422509
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422509
    reference: chr 11
allele count: 1
allele frequency: 8.254775387561705e-6
allele num: 121142
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.323A>G
  hgvsp: ENSP00000335506.8:p.Asp108Gly
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.323A>G
  hgvsp: ENSP00000392264.1:p.Asp108Gly
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.338A>G
  hgvsp: ENSP00000377230.3:p.Asp113Gly
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.323A>G
  hgvsp: ENSP00000403127.1:p.Asp108Gly
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1058A>G
  hgvsp: ENSP00000352332.5:p.Asp353Gly
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1058A>G
  hgvsp: ENSP00000377233.3:p.Asp353Gly
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1395A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1058A>G
  hgvsp: ENSP00000390461.2:p.Asp353Gly
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5317
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13210
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21853
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp353Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-72422519-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422519
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422519
    reference: chr 11
allele count: 1
allele frequency: 8.259957378619926e-6
allele num: 121066
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.313G>T
  hgvsp: ENSP00000335506.8:p.Val105Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.313G>T
  hgvsp: ENSP00000403127.1:p.Val105Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1385G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.328G>T
  hgvsp: ENSP00000377230.3:p.Val110Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1048G>T
  hgvsp: ENSP00000390461.2:p.Val350Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1048G>T
  hgvsp: ENSP00000352332.5:p.Val350Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.313G>T
  hgvsp: ENSP00000392264.1:p.Val105Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1048G>T
  hgvsp: ENSP00000377233.3:p.Val350Leu
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5317
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3361
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1937
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val350Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

11-72422524-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422524
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422524
    reference: chr 11
allele count: 2
allele frequency: 1.652755970580944e-5
allele num: 121010
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.308G>A
  hgvsp: ENSP00000403127.1:p.Arg103Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.308G>A
  hgvsp: ENSP00000392264.1:p.Arg103Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1043G>A
  hgvsp: ENSP00000390461.2:p.Arg348Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.323G>A
  hgvsp: ENSP00000377230.3:p.Arg108Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1043G>A
  hgvsp: ENSP00000377233.3:p.Arg348Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1043G>A
  hgvsp: ENSP00000352332.5:p.Arg348Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.308G>A
  hgvsp: ENSP00000335506.8:p.Arg103Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1380G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5317
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14148
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4149
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg348Gln
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

11-72422525-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422525
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422525
    reference: chr 11
allele count: 9
allele frequency: 7.439246156389485e-5
allele num: 120980
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.322C>T
  hgvsp: ENSP00000377230.3:p.Arg108Ter
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1042C>T
  hgvsp: ENSP00000377233.3:p.Arg348Ter
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.307C>T
  hgvsp: ENSP00000403127.1:p.Arg103Ter
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1042C>T
  hgvsp: ENSP00000390461.2:p.Arg348Ter
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1379C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.307C>T
  hgvsp: ENSP00000392264.1:p.Arg103Ter
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1042C>T
  hgvsp: ENSP00000352332.5:p.Arg348Ter
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.307C>T
  hgvsp: ENSP00000335506.8:p.Arg103Ter
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1937
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3010
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13210
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg348Ter
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

11-72422533-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422533
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422533
    reference: chr 11
allele count: 1
allele frequency: 8.271709100534353e-6
allele num: 120894
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1371A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.299A>G
  hgvsp: ENSP00000403127.1:p.Tyr100Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.314A>G
  hgvsp: ENSP00000377230.3:p.Tyr105Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.299A>G
  hgvsp: ENSP00000392264.1:p.Tyr100Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1034A>G
  hgvsp: ENSP00000390461.2:p.Tyr345Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.299A>G
  hgvsp: ENSP00000335506.8:p.Tyr100Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1034A>G
  hgvsp: ENSP00000352332.5:p.Tyr345Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1034A>G
  hgvsp: ENSP00000377233.3:p.Tyr345Cys
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5317
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4146
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7824
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr345Cys
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

11-72422535-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422535
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422535
    reference: chr 11
allele count: 1
allele frequency: 8.274446853227862e-6
allele num: 120854
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1032C>G
  hgvsp: ENSP00000352332.5:p.Ile344Met
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.297C>G
  hgvsp: ENSP00000335506.8:p.Ile99Met
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.297C>G
  hgvsp: ENSP00000403127.1:p.Ile99Met
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1032C>G
  hgvsp: ENSP00000390461.2:p.Ile344Met
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.297C>G
  hgvsp: ENSP00000392264.1:p.Ile99Met
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1369C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1032C>G
  hgvsp: ENSP00000377233.3:p.Ile344Met
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.312C>G
  hgvsp: ENSP00000377230.3:p.Ile104Met
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5317
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4146
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13203
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1938
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21579
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile344Met
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

11-72422538-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422538
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422538
    reference: chr 11
allele count: 2
allele frequency: 1.655683963045134e-5
allele num: 120796
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1029C>T
  hgvsp: ENST00000393609.3:c.1029C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.294C>T
  hgvsp: ENST00000426523.1:c.294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.294C>T
  hgvsp: ENST00000429686.1:c.294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1029C>T
  hgvsp: ENST00000359373.5:c.1029C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.309C>T
  hgvsp: ENST00000393605.3:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1029C>T
  hgvsp: ENST00000455638.2:c.1029C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.294C>T
  hgvsp: ENST00000334211.8:c.294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1366C>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8495
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5019
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21521
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Tyr343Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

11-72422538-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422538
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422538
    reference: chr 11
allele count: 2
allele frequency: 1.655683963045134e-5
allele num: 120796
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.294C>A
  hgvsp: ENSP00000392264.1:p.Tyr98Ter
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1366C>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1029C>A
  hgvsp: ENSP00000390461.2:p.Tyr343Ter
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.309C>A
  hgvsp: ENSP00000377230.3:p.Tyr103Ter
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1029C>A
  hgvsp: ENSP00000377233.3:p.Tyr343Ter
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1029C>A
  hgvsp: ENSP00000352332.5:p.Tyr343Ter
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.294C>A
  hgvsp: ENSP00000335506.8:p.Tyr98Ter
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.294C>A
  hgvsp: ENSP00000403127.1:p.Tyr98Ter
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14151
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3347
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Tyr343Ter
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

11-72422560-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422560
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422560
    reference: chr 11
allele count: 2
allele frequency: 1.661129568106312e-5
allele num: 120400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.288-16C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1023-16C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1023-16C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1023-16C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1360-16C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.288-16C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.288-16C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.303-16C>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3007
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/11-72422571-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422571
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422571
    reference: chr 11
allele count: 1
allele frequency: 8.320990530712775e-6
allele num: 120178
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.288-27T>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1023-27T>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1023-27T>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1360-27T>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1023-27T>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.303-27T>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.288-27T>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.288-27T>G
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19272
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3280
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/11-72422576-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422576
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422576
    reference: chr 11
allele count: 1
allele frequency: 8.331944675887353e-6
allele num: 120020
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.288-32G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1023-32G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1023-32G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1360-32G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1023-32G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.303-32G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.288-32G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.288-32G>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4462
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13674
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3253
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7304
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

11-72422577-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422577
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422577
    reference: chr 11
allele count: 1
allele frequency: 8.335834083558401e-6
allele num: 119964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1360-33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1023-33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1023-33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.303-33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.288-33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.288-33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1023-33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.288-33G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5317
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8397
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17670
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13189
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4096
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

11-72422578-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72422578
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72422578
    reference: chr 11
allele count: 10
allele frequency: 8.338475393159115e-5
allele num: 119926
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1023-34C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.303-34C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.288-34C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.288-34C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.288-34C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1360-34C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1023-34C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1023-34C>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8359
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7038
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4894
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3194
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-72423191-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423191
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423191
    reference: chr 11
allele count: 1
allele frequency: 9.13575735428467e-6
allele num: 109460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.287+50G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1359+50G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.302+50G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.287+50G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1022+50G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.287+50G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1022+50G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1022+50G>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7762
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2771
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28836
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

11-72423192-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423192
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423192
    reference: chr 11
allele count: 3
allele frequency: 2.735828408842197e-5
allele num: 109656
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.302+49G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1022+49G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1022+49G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.287+49G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1022+49G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.287+49G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1359+49G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.287+49G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23588
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9552
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11953
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1675
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1440
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

11-72423194-C-CAGGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423194
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423198
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 109754
alternate allele: CAGGA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.287+46_287+47insTCCT
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.287+46_287+47insTCCT
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1022+46_1022+47insTCCT
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1022+46_1022+47insTCCT
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1359+46_1359+47insTCCT
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1022+46_1022+47insTCCT
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.287+46_287+47insTCCT
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.302+46_302+47insTCCT
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3200
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2300
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS

11-72423195-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423195
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423195
    reference: chr 11
allele count: 8
allele frequency: 7.293281064819035e-5
allele num: 109690
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.287+46G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.287+46G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.287+46G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1359+46G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1022+46G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.302+46G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1022+46G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1022+46G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12128
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/11-72423196-A-AC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423196
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423197
    reference: chr 11
allele count: 56
allele frequency: 5.156917636658317e-4
allele num: 108592
alternate allele: AC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.302+44dupG
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1022+44dupG
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1022+44dupG
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1359+44dupG
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.287+44dupG
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.287+44dupG
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1022+44dupG
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.287+44dupG
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3886
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23829
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9519
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12149
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1595
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 31066
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2062
  bin: 7.25e1
  variant carriers: 6
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/11-72423197-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423197
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423197
    reference: chr 11
allele count: 2
allele frequency: 1.838776110620771e-5
allele num: 108768
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1022+44G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.302+44G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1359+44G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.287+44G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1022+44G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.287+44G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.287+44G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1022+44G>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9403
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32275
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2092
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

11-72423197-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423197
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423197
    reference: chr 11
allele count: 36
allele frequency: 3.309796999117388e-4
allele num: 108768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.287+44G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.287+44G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1359+44G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.302+44G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1022+44G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1022+44G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1022+44G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.287+44G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24212
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12399
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9403
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2092
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3391
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7565
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

11-72423198-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423198
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423198
    reference: chr 11
allele count: 4
allele frequency: 3.650367774553287e-5
allele num: 109578
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.287+43G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1359+43G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1022+43G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1022+43G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1022+43G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.302+43G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.287+43G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.287+43G>C
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12620
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3582
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33409
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7745
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-72423198-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423198
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423198
    reference: chr 11
allele count: 2
allele frequency: 1.825183887276643e-5
allele num: 109578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1022+43G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.287+43G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1359+43G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.287+43G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.302+43G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1022+43G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.287+43G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1022+43G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24578
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9407
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1909
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

11-72423201-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423201
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423201
    reference: chr 11
allele count: 2
allele frequency: 1.81692648715433e-5
allele num: 110076
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1022+40G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.287+40G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1022+40G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.287+40G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1022+40G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1359+40G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.302+40G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.287+40G>C
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24927
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13088
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3882
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

11-72423202-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423202
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423202
    reference: chr 11
allele count: 1
allele frequency: 9.086448470750722e-6
allele num: 110054
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1022+39G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1022+39G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1022+39G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.287+39G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.287+39G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1359+39G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.302+39G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.287+39G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7892
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34874
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/11-72423203-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423203
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423203
    reference: chr 11
allele count: 4
allele frequency: 3.632730905458178e-5
allele num: 110110
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.302+38G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.287+38G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1359+38G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1022+38G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1022+38G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1022+38G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.287+38G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.287+38G>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9312
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35175
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2169
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD

11-72423211-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423211
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423211
    reference: chr 11
allele count: 2
allele frequency: 1.809398013280981e-5
allele num: 110534
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1359+30C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.302+30C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1022+30C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1022+30C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.287+30C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.287+30C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1022+30C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.287+30C>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7930
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

11-72423222-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423222
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423222
    reference: chr 11
allele count: 1
allele frequency: 8.977466558937068e-6
allele num: 111390
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1022+19G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1022+19G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.302+19G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.287+19G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1022+19G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.287+19G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.287+19G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1359+19G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2161
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4747
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38076
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/11-72423238-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423238
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423238
    reference: chr 11
allele count: 1
allele frequency: 8.847834934791456e-6
allele num: 113022
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.287+3G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1022+3G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.287+3G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.287+3G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.302+3G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1022+3G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1022+3G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1359+3G>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1022+3G>T
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/11-72423240-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423240
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423240
    reference: chr 11
allele count: 1
allele frequency: 8.820986892013479e-6
allele num: 113366
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1022+1G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1359+1G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1022+1G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.287+1G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.287+1G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.302+1G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.287+1G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1022+1G>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8104
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1022+1G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

11-72423241-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423241
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423241
    reference: chr 11
allele count: 1
allele frequency: 8.813368116759501e-6
allele num: 113464
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.287G>A
  hgvsp: ENSP00000403127.1:p.Gly96Glu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.287G>A
  hgvsp: ENSP00000392264.1:p.Gly96Glu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1022G>A
  hgvsp: ENSP00000377233.3:p.Gly341Glu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1022G>A
  hgvsp: ENSP00000352332.5:p.Gly341Glu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1022G>A
  hgvsp: ENSP00000390461.2:p.Gly341Glu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.302G>A
  hgvsp: ENSP00000377230.3:p.Gly101Glu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.287G>A
  hgvsp: ENSP00000335506.8:p.Gly96Glu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1359G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8113
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly341Glu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-72423243-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423243
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423243
    reference: chr 11
allele count: 2
allele frequency: 1.758581879572313e-5
allele num: 113728
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1020G>A
  hgvsp: ENST00000393609.3:c.1020G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1357G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.285G>A
  hgvsp: ENST00000429686.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1020G>A
  hgvsp: ENST00000455638.2:c.1020G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.285G>A
  hgvsp: ENST00000426523.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.285G>A
  hgvsp: ENST00000334211.8:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.300G>A
  hgvsp: ENST00000393605.3:c.300G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1020G>A
  hgvsp: ENST00000359373.5:c.1020G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9381
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
hgvs: c.1020G>A
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/11-72423246-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423246
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423246
    reference: chr 11
allele count: 1
allele frequency: 8.774084862948794e-6
allele num: 113972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1017G>T
  hgvsp: ENST00000359373.5:c.1017G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.282G>T
  hgvsp: ENST00000334211.8:c.282G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.297G>T
  hgvsp: ENST00000393605.3:c.297G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.282G>T
  hgvsp: ENST00000429686.1:c.282G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1017G>T
  hgvsp: ENST00000455638.2:c.1017G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1354G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.282G>T
  hgvsp: ENST00000426523.1:c.282G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1017G>T
  hgvsp: ENST00000393609.3:c.1017G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26483
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1898
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro339Pro
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

11-72423246-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423246
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423246
    reference: chr 11
allele count: 73
allele frequency: 6.40508194995262e-4
allele num: 113972
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1017G>A
  hgvsp: ENST00000455638.2:c.1017G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1017G>A
  hgvsp: ENST00000393609.3:c.1017G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.297G>A
  hgvsp: ENST00000393605.3:c.297G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.282G>A
  hgvsp: ENST00000429686.1:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1017G>A
  hgvsp: ENST00000359373.5:c.1017G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1354G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.282G>A
  hgvsp: ENST00000426523.1:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.282G>A
  hgvsp: ENST00000334211.8:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 9377
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26483
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16547
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 9.75e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40203
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 8.75e1
  variant carriers: 1
hgvs: p.Pro339Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

11-72423247-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423247
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423247
    reference: chr 11
allele count: 1
allele frequency: 8.757794437048973e-6
allele num: 114184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1016C>A
  hgvsp: ENSP00000352332.5:p.Pro339Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.281C>A
  hgvsp: ENSP00000392264.1:p.Pro94Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1353C>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1016C>A
  hgvsp: ENSP00000377233.3:p.Pro339Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.281C>A
  hgvsp: ENSP00000335506.8:p.Pro94Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.281C>A
  hgvsp: ENSP00000403127.1:p.Pro94Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1016C>A
  hgvsp: ENSP00000390461.2:p.Pro339Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.296C>A
  hgvsp: ENSP00000377230.3:p.Pro99Gln
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1903
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro339Gln
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

11-72423247-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423247
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423247
    reference: chr 11
allele count: 5
allele frequency: 4.378897218524487e-5
allele num: 114184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.281C>T
  hgvsp: ENSP00000335506.8:p.Pro94Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.1016C>T
  hgvsp: ENSP00000352332.5:p.Pro339Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.281C>T
  hgvsp: ENSP00000392264.1:p.Pro94Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.296C>T
  hgvsp: ENSP00000377230.3:p.Pro99Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1353C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.281C>T
  hgvsp: ENSP00000403127.1:p.Pro94Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.1016C>T
  hgvsp: ENSP00000377233.3:p.Pro339Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.1016C>T
  hgvsp: ENSP00000390461.2:p.Pro339Leu
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9385
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1903
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40608
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8176
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro339Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum

11-72423264-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423264
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423264
    reference: chr 11
allele count: 1
allele frequency: 8.663559336717898e-6
allele num: 115426
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.999G>C
  hgvsp: ENSP00000377233.3:p.Trp333Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.999G>C
  hgvsp: ENSP00000352332.5:p.Trp333Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.264G>C
  hgvsp: ENSP00000392264.1:p.Trp88Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.264G>C
  hgvsp: ENSP00000403127.1:p.Trp88Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.264G>C
  hgvsp: ENSP00000335506.8:p.Trp88Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.999G>C
  hgvsp: ENSP00000390461.2:p.Trp333Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.279G>C
  hgvsp: ENSP00000377230.3:p.Trp93Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1336G>C
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3298
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Trp333Cys
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/11-72423265-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423265
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423265
    reference: chr 11
allele count: 1
allele frequency: 8.656809446310469e-6
allele num: 115516
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1335G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.263G>T
  hgvsp: ENSP00000403127.1:p.Trp88Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.263G>T
  hgvsp: ENSP00000335506.8:p.Trp88Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.278G>T
  hgvsp: ENSP00000377230.3:p.Trp93Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.998G>T
  hgvsp: ENSP00000377233.3:p.Trp333Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.998G>T
  hgvsp: ENSP00000352332.5:p.Trp333Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.263G>T
  hgvsp: ENSP00000392264.1:p.Trp88Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.998G>T
  hgvsp: ENSP00000390461.2:p.Trp333Leu
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3256
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Trp333Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

11-72423274-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423274
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423274
    reference: chr 11
allele count: 1
allele frequency: 8.650070065567531e-6
allele num: 115606
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.269A>G
  hgvsp: ENSP00000377230.3:p.Lys90Arg
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.989A>G
  hgvsp: ENSP00000377233.3:p.Lys330Arg
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.989A>G
  hgvsp: ENSP00000390461.2:p.Lys330Arg
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1326A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.254A>G
  hgvsp: ENSP00000335506.8:p.Lys85Arg
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.254A>G
  hgvsp: ENSP00000403127.1:p.Lys85Arg
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.254A>G
  hgvsp: ENSP00000392264.1:p.Lys85Arg
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.989A>G
  hgvsp: ENSP00000352332.5:p.Lys330Arg
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9404
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8259
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys330Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

11-72423281-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423281
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423281
    reference: chr 11
allele count: 2
allele frequency: 1.732321657485362e-5
allele num: 115452
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.982G>A
  hgvsp: ENSP00000377233.3:p.Val328Ile
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1319G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.982G>A
  hgvsp: ENSP00000352332.5:p.Val328Ile
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.262G>A
  hgvsp: ENSP00000377230.3:p.Val88Ile
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.247G>A
  hgvsp: ENSP00000403127.1:p.Val83Ile
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.247G>A
  hgvsp: ENSP00000392264.1:p.Val83Ile
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.247G>A
  hgvsp: ENSP00000335506.8:p.Val83Ile
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.982G>A
  hgvsp: ENSP00000390461.2:p.Val328Ile
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8145
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val328Ile
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

11-72423290-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423290
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423290
    reference: chr 11
allele count: 15
allele frequency: 1.304211734427712e-4
allele num: 115012
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1310G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.253G>A
  hgvsp: ENSP00000377230.3:p.Val85Ile
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.973G>A
  hgvsp: ENSP00000377233.3:p.Val325Ile
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.238G>A
  hgvsp: ENSP00000392264.1:p.Val80Ile
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.973G>A
  hgvsp: ENSP00000390461.2:p.Val325Ile
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.238G>A
  hgvsp: ENSP00000403127.1:p.Val80Ile
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.973G>A
  hgvsp: ENSP00000352332.5:p.Val325Ile
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.238G>A
  hgvsp: ENSP00000335506.8:p.Val80Ile
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26951
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3952
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val325Ile
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-72423291-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423291
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423291
    reference: chr 11
allele count: 9
allele frequency: 7.828673822654442e-5
allele num: 114962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.237C>T
  hgvsp: ENST00000334211.8:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.252C>T
  hgvsp: ENST00000393605.3:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.972C>T
  hgvsp: ENST00000393609.3:c.972C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.972C>T
  hgvsp: ENST00000455638.2:c.972C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.972C>T
  hgvsp: ENST00000359373.5:c.972C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.237C>T
  hgvsp: ENST00000426523.1:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.237C>T
  hgvsp: ENST00000429686.1:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1309C>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9352
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40120
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro324Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/11-72423303-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423303
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423303
    reference: chr 11
allele count: 1
allele frequency: 8.774392812017408e-6
allele num: 113968
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.960G>T
  hgvsp: ENST00000455638.2:c.960G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1297G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.960G>T
  hgvsp: ENST00000393609.3:c.960G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.225G>T
  hgvsp: ENST00000334211.8:c.225G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.240G>T
  hgvsp: ENST00000393605.3:c.240G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.225G>T
  hgvsp: ENST00000429686.1:c.225G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.225G>T
  hgvsp: ENST00000426523.1:c.225G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.960G>T
  hgvsp: ENST00000359373.5:c.960G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26407
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37570
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly320Gly
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

11-72423309-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423309
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423309
    reference: chr 11
allele count: 2
allele frequency: 1.758922132517194e-5
allele num: 113706
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.954G>A
  hgvsp: ENST00000359373.5:c.954G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.234G>A
  hgvsp: ENST00000393605.3:c.234G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.954G>A
  hgvsp: ENST00000393609.3:c.954G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.219G>A
  hgvsp: ENST00000426523.1:c.219G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1291G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.219G>A
  hgvsp: ENST00000334211.8:c.219G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.954G>A
  hgvsp: ENST00000455638.2:c.954G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.219G>A
  hgvsp: ENST00000429686.1:c.219G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38107
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7486
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro318Pro
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

11-72423310-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423310
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423310
    reference: chr 11
allele count: 4
allele frequency: 3.517287467904752e-5
allele num: 113724
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.953C>A
  hgvsp: ENSP00000377233.3:p.Pro318Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.218C>A
  hgvsp: ENSP00000335506.8:p.Pro73Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.953C>A
  hgvsp: ENSP00000390461.2:p.Pro318Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1290C>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.218C>A
  hgvsp: ENSP00000403127.1:p.Pro73Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.233C>A
  hgvsp: ENSP00000377230.3:p.Pro78Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.953C>A
  hgvsp: ENSP00000352332.5:p.Pro318Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.218C>A
  hgvsp: ENSP00000392264.1:p.Pro73Gln
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26006
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5120
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro318Gln
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-72423310-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423310
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423310
    reference: chr 11
allele count: 5
allele frequency: 4.39660933488094e-5
allele num: 113724
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.953C>T
  hgvsp: ENSP00000377233.3:p.Pro318Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1290C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.218C>T
  hgvsp: ENSP00000392264.1:p.Pro73Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.953C>T
  hgvsp: ENSP00000352332.5:p.Pro318Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.953C>T
  hgvsp: ENSP00000390461.2:p.Pro318Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.233C>T
  hgvsp: ENSP00000377230.3:p.Pro78Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.218C>T
  hgvsp: ENSP00000335506.8:p.Pro73Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.218C>T
  hgvsp: ENSP00000403127.1:p.Pro73Leu
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9052
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5120
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro318Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

11-72423312-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423312
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423312
    reference: chr 11
allele count: 5
allele frequency: 4.406373378454596e-5
allele num: 113472
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.231G>A
  hgvsp: ENST00000393605.3:c.231G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.951G>A
  hgvsp: ENST00000455638.2:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.951G>A
  hgvsp: ENST00000359373.5:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.216G>A
  hgvsp: ENST00000334211.8:c.216G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.216G>A
  hgvsp: ENST00000426523.1:c.216G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1288G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.951G>A
  hgvsp: ENST00000393609.3:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.216G>A
  hgvsp: ENST00000429686.1:c.216G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14962
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1686
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5248
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 9.75e1
  variant carriers: 5
hgvs: p.Gly317Gly
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

11-72423313-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423313
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423313
    reference: chr 11
allele count: 1
allele frequency: 8.816009873931059e-6
allele num: 113430
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1287G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.215G>A
  hgvsp: ENSP00000335506.8:p.Gly72Glu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.215G>A
  hgvsp: ENSP00000403127.1:p.Gly72Glu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.230G>A
  hgvsp: ENSP00000377230.3:p.Gly77Glu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.950G>A
  hgvsp: ENSP00000377233.3:p.Gly317Glu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.950G>A
  hgvsp: ENSP00000352332.5:p.Gly317Glu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.215G>A
  hgvsp: ENSP00000392264.1:p.Gly72Glu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.950G>A
  hgvsp: ENSP00000390461.2:p.Gly317Glu
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7411
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1992
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5352
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly317Glu
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum

11-72423314-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423314
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423314
    reference: chr 11
allele count: 8
allele frequency: 7.058532883940073e-5
allele num: 113338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.949G>A
  hgvsp: ENSP00000390461.2:p.Gly317Arg
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.949G>A
  hgvsp: ENSP00000352332.5:p.Gly317Arg
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.229G>A
  hgvsp: ENSP00000377230.3:p.Gly77Arg
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.949G>A
  hgvsp: ENSP00000377233.3:p.Gly317Arg
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.214G>A
  hgvsp: ENSP00000335506.8:p.Gly72Arg
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1286G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.214G>A
  hgvsp: ENSP00000403127.1:p.Gly72Arg
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.214G>A
  hgvsp: ENSP00000392264.1:p.Gly72Arg
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14867
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 965
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly317Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

11-72423315-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423315
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423315
    reference: chr 11
allele count: 43
allele frequency: 3.797982652935045e-4
allele num: 113218
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1285C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.213C>T
  hgvsp: ENST00000334211.8:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.948C>T
  hgvsp: ENST00000455638.2:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.948C>T
  hgvsp: ENST00000359373.5:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.213C>T
  hgvsp: ENST00000429686.1:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.948C>T
  hgvsp: ENST00000393609.3:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.213C>T
  hgvsp: ENST00000426523.1:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.228C>T
  hgvsp: ENST00000393605.3:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14796
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8856
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 25511
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 3.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 9.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7319
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp316Asp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

11-72423323-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423323
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423323
    reference: chr 11
allele count: 1
allele frequency: 8.869022278983965e-6
allele num: 112752
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.220C>G
  hgvsp: ENSP00000377230.3:p.Pro74Ala
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.940C>G
  hgvsp: ENSP00000390461.2:p.Pro314Ala
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.940C>G
  hgvsp: ENSP00000352332.5:p.Pro314Ala
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.940C>G
  hgvsp: ENSP00000377233.3:p.Pro314Ala
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.205C>G
  hgvsp: ENSP00000392264.1:p.Pro69Ala
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1277C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.205C>G
  hgvsp: ENSP00000403127.1:p.Pro69Ala
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.205C>G
  hgvsp: ENSP00000335506.8:p.Pro69Ala
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8621
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5996
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro314Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD

11-72423330-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423330
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423330
    reference: chr 11
allele count: 5
allele frequency: 4.459348578359673e-5
allele num: 112124
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.198G>A
  hgvsp: ENST00000429686.1:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.933G>A
  hgvsp: ENST00000393609.3:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.213G>A
  hgvsp: ENST00000393605.3:c.213G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.198G>A
  hgvsp: ENST00000334211.8:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.198G>A
  hgvsp: ENST00000426523.1:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.933G>A
  hgvsp: ENST00000359373.5:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.933G>A
  hgvsp: ENST00000455638.2:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1270G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14595
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4672
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala311Ala
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

11-72423352-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423352
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423352
    reference: chr 11
allele count: 68
allele frequency: 6.175418202953303e-4
allele num: 110114
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.911C>T
  hgvsp: ENSP00000390461.2:p.Ser304Phe
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.911C>T
  hgvsp: ENSP00000377233.3:p.Ser304Phe
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.176C>T
  hgvsp: ENSP00000392264.1:p.Ser59Phe
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.191C>T
  hgvsp: ENSP00000377230.3:p.Ser64Phe
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.176C>T
  hgvsp: ENSP00000403127.1:p.Ser59Phe
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.176C>T
  hgvsp: ENSP00000335506.8:p.Ser59Phe
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1248C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.911C>T
  hgvsp: ENSP00000352332.5:p.Ser304Phe
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13155
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6260
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5854
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 20584
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7334
  bin: 3.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 7089
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Ser304Phe
num of homozygotes: 1
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

11-72423370-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423370
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423370
    reference: chr 11
allele count: 5
allele frequency: 4.641318877172137e-5
allele num: 107728
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.158C>A
  hgvsp: ENSP00000403127.1:p.Thr53Asn
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.893C>A
  hgvsp: ENSP00000377233.3:p.Thr298Asn
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.173C>A
  hgvsp: ENSP00000377230.3:p.Thr58Asn
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.893C>A
  hgvsp: ENSP00000352332.5:p.Thr298Asn
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.893C>A
  hgvsp: ENSP00000390461.2:p.Thr298Asn
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.158C>A
  hgvsp: ENSP00000392264.1:p.Thr53Asn
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.158C>A
  hgvsp: ENSP00000335506.8:p.Thr53Asn
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1230C>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17373
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6139
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14032
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4924
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26642
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6778
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr298Asn
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

11-72423373-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72423373
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72423373
    reference: chr 11
allele count: 2
allele frequency: 1.864106626899059e-5
allele num: 107290
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.890A>C
  hgvsp: ENSP00000377233.3:p.His297Pro
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.890A>C
  hgvsp: ENSP00000390461.2:p.His297Pro
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.155A>C
  hgvsp: ENSP00000403127.1:p.His52Pro
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.890A>C
  hgvsp: ENSP00000352332.5:p.His297Pro
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.170A>C
  hgvsp: ENSP00000377230.3:p.His57Pro
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.155A>C
  hgvsp: ENSP00000335506.8:p.His52Pro
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.155A>C
  hgvsp: ENSP00000392264.1:p.His52Pro
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.1227A>C
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17040
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6431
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His297Pro
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 982
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2259
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9010
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2185
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8354
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4916
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5198
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.723305990211622e-5
allele num: 58028
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

FS
type: SiteQuality
SIO_000300: 5.203e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

DP
type: SiteQuality
SIO_000300: 1.203405e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.43e-1

QD
type: SiteQuality
SIO_000300: 1.258e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.237e0

MQRankSum
type: SiteQuality
SIO_000300: -6.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2259
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8354
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3405
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4916
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4928
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.123090745732255e-4
allele num: 8904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58028
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15458
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.43e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

FS
type: SiteQuality
SIO_000300: 5.203e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.237e0

DP
type: SiteQuality
SIO_000300: 1.203405e6

QD
type: SiteQuality
SIO_000300: 1.258e1

GenotypeQuality
all individuals: 289
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2995
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1942
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4159
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5033
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19703
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.926411096127914e-4
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.173727e6

QD
type: SiteQuality
SIO_000300: 1.373e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.371e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.81e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 274
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4156
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7689
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19993
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3339
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5024
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.957e1

FS
type: SiteQuality
SIO_000300: 7.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.529e0

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

DP
type: SiteQuality
SIO_000300: 2.177799e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.76e-2

QD
type: SiteQuality
SIO_000300: 1.263e1

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4156
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 5024
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
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variant carriers: 0

GenotypeQuality
all individuals: 274
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variant carriers: 0

GenotypeQuality
all individuals: 7689
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19993
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 50
allele frequency: 4.820671037408407e-3
allele num: 10372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502087902184036e-5
allele num: 66574
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.76e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.48e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.529e0

DP
type: SiteQuality
SIO_000300: 2.177799e6

QD
type: SiteQuality
SIO_000300: 1.263e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.45e-1

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7726
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1943
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variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4163
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.921e0

VQSLOD
type: SiteQuality
SIO_000300: -1.252e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

MQRankSum
type: SiteQuality
SIO_000300: -2.77e-1

QD
type: SiteQuality
SIO_000300: 6.83e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

DP
type: SiteQuality
SIO_000300: 2.179604e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.231e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 175
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.099048548426445e-5
allele num: 16396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

MQ
type: SiteQuality
SIO_000300: 5.125e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.373e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.87e-1

DP
type: SiteQuality
SIO_000300: 2.180053e6

FS
type: SiteQuality
SIO_000300: 7.579e0

MQRankSum
type: SiteQuality
SIO_000300: -3.041e0

QD
type: SiteQuality
SIO_000300: 2.47e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 224
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variant carriers: 0

GenotypeQuality
all individuals: 120
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501456412720339e-5
allele num: 66602
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

VQSLOD
type: SiteQuality
SIO_000300: 2.37e-1

FS
type: SiteQuality
SIO_000300: 6.58e-1

QD
type: SiteQuality
SIO_000300: 9.32e0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.066e0

DP
type: SiteQuality
SIO_000300: 2.183203e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

GenotypeQuality
all individuals: 13454
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 6.095330976472023e-5
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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InbreedingCoeff
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SIO_000300: 1.0e-4

MQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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FS
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DP
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
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allele frequency: 6.095330976472023e-5
allele num: 16406
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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QD
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MQ
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501321162623108e-5
allele num: 66608
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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QD
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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DP
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FS
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MQ
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501185936890143e-5
allele num: 66614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: -1.217e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.64e-1

QD
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.151999999999999e0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.953e1

MQRankSum
type: SiteQuality
SIO_000300: 7.75e-1

DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

South Asian
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allele count: 6
allele frequency: 3.644757623618029e-4
allele num: 16462
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

DP
type: SiteQuality
SIO_000300: 2.188768e6

ReadPosRankSum
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BaseQRankSum
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SIO_000300: -9.5e-2

FS
type: SiteQuality
SIO_000300: 2.955e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 3
allele frequency: 2.889060092449923e-4
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.77e0

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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QD
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 9
allele frequency: 1.350337584396099e-4
allele num: 66650
num of homozygotes: 0

African
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allele frequency: 6.873913882988994e-2
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Latino
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allele frequency: 1.98961937716263e-3
allele num: 11560
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South Asian
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allele num: 16494
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East Asian
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Other
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allele frequency: 1.103752759381898e-3
allele num: 906
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European (Finnish)
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MQ
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MQRankSum
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VQSLOD
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ReadPosRankSum
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FS
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BaseQRankSum
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DP
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InbreedingCoeff
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66650
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European (Finnish)
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East Asian
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African
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South Asian
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Latino
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Other
type: Population
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MQ
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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MQRankSum
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QD
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
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SIO_000300: 2.2e-1

BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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allele num: 66642
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African
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Other
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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DP
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MQ
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QD
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BaseQRankSum
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7843
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variant carriers: 0

GenotypeQuality
all individuals: 4149
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501276084671971e-5
allele num: 66610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.52e0

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-2

DP
type: SiteQuality
SIO_000300: 2.183423e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

QD
type: SiteQuality
SIO_000300: 1.412e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3010
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502268425322237e-5
allele num: 66566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.021e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.32e-1

DP
type: SiteQuality
SIO_000300: 2.182267e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.387e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.9e-2

QD
type: SiteQuality
SIO_000300: 1.156e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1937
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.006072265977274e-5
allele num: 66532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.08e-1

FS
type: SiteQuality
SIO_000300: 3.301e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.181579e6

QD
type: SiteQuality
SIO_000300: 1.315e1

MQ
type: SiteQuality
SIO_000300: 5.927e1

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.535833081342606e-4
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.013590715015936e-5
allele num: 66516
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213297743266198e-4
allele num: 16484
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.181546e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.679e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

QD
type: SiteQuality
SIO_000300: 1.134e1

VQSLOD
type: SiteQuality
SIO_000300: 5.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.17e-1

GenotypeQuality
all individuals: 418
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1938
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3354
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66472
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.738994935722633e-5
allele num: 10268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.266e0

DP
type: SiteQuality
SIO_000300: 2.179724e6

MQRankSum
type: SiteQuality
SIO_000300: 7.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.547e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.34e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.955e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.74e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 7821
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 19
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.748488984207447e-5
allele num: 10258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66450
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.079e0

MQ
type: SiteQuality
SIO_000300: 5.65e1

MQRankSum
type: SiteQuality
SIO_000300: -8.68e-1

DP
type: SiteQuality
SIO_000300: 2.179269e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

VQSLOD
type: SiteQuality
SIO_000300: -1.024e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-1

QD
type: SiteQuality
SIO_000300: 1.17e1

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1937
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.668515950069348e-5
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.75800156128025e-5
allele num: 10248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.317e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.73e0

DP
type: SiteQuality
SIO_000300: 2.178506e6

MQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-3

QD
type: SiteQuality
SIO_000300: 1.141e1

MQ
type: SiteQuality
SIO_000300: 5.944e1

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.75800156128025e-5
allele num: 10248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505797319680771e-5
allele num: 66410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.73e0

VQSLOD
type: SiteQuality
SIO_000300: 9.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.317e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

DP
type: SiteQuality
SIO_000300: 2.178506e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e-1

QD
type: SiteQuality
SIO_000300: 1.141e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-3

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 1936
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.737015806843842e-4
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66204
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.32e-1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.627e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.151e1

GenotypeQuality
all individuals: 4121
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2998
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7494
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1929
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13194
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4971
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.891196834817012e-5
allele num: 10110
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66108
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.327e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e-1

QD
type: SiteQuality
SIO_000300: 1.491e1

VQSLOD
type: SiteQuality
SIO_000300: 3.81e-1

DP
type: SiteQuality
SIO_000300: 2.15028e6

GenotypeQuality
all individuals: 1925
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13200
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17932
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66040
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164415463437354e-4
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16322
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.6084e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

VQSLOD
type: SiteQuality
SIO_000300: -3.356e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.05e0

MQRankSum
type: SiteQuality
SIO_000300: 2.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.568e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

QD
type: SiteQuality
SIO_000300: 1.273e1

DP
type: SiteQuality
SIO_000300: 2.136431e6

MQ
type: SiteQuality
SIO_000300: 5.947e1

GenotypeQuality
all individuals: 307
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3227
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variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2985
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4923
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7250
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1919
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.707767328456984e-5
allele num: 11484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10082
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.506e0

MQRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-1

DP
type: SiteQuality
SIO_000300: 2.133555e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.5e0

QD
type: SiteQuality
SIO_000300: 1.456e1

VQSLOD
type: SiteQuality
SIO_000300: 6.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1185
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1189
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1911
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variant carriers: 0

GenotypeQuality
all individuals: 127
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variant carriers: 0

GenotypeQuality
all individuals: 2977
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variant carriers: 0

GenotypeQuality
all individuals: 497
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GenotypeQuality
all individuals: 13180
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 407
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variant carriers: 0

GenotypeQuality
all individuals: 4088
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16818
bin: 6.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.546694553059925e-5
allele num: 65982
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.710801393728223e-5
allele num: 11480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.67962713111738e-4
allele num: 16306
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.606e0

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

FS
type: SiteQuality
SIO_000300: 9.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.99e-1

DP
type: SiteQuality
SIO_000300: 2.125027e6

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.424e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.11e-1

GenotypeQuality
all individuals: 361
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2313
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1225
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
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variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1486
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variant carriers: 0

GenotypeQuality
all individuals: 1785
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variant carriers: 0

GenotypeQuality
all individuals: 905
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variant carriers: 0

GenotypeQuality
all individuals: 2181
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variant carriers: 0

GenotypeQuality
all individuals: 2144
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variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62666
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.046901172529313e-4
allele num: 9552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.834e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.470317e6

MQRankSum
type: SiteQuality
SIO_000300: -7.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e0

FS
type: SiteQuality
SIO_000300: 3.582e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.634e0

QD
type: SiteQuality
SIO_000300: 6.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.393e0

GenotypeQuality
all individuals: 29898
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2943
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2319
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1766
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1059
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2181
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1505
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7807
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62768
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.919992213354098e-4
allele num: 10274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

DP
type: SiteQuality
SIO_000300: 1.470002e6

FS
type: SiteQuality
SIO_000300: 1.6425e1

VQSLOD
type: SiteQuality
SIO_000300: -1.993e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

GenotypeQuality
all individuals: 1121
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1483
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1192
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7834
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31222
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
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variant carriers: 0

GenotypeQuality
all individuals: 1366
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 7.5e0
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

MQRankSum
type: SiteQuality
SIO_000300: -5.82e-1

DP
type: SiteQuality
SIO_000300: 1.471515e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.82e-1

FS
type: SiteQuality
SIO_000300: 3.033e0

GenotypeQuality
all individuals: 7814
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 934
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1467
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2124
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variant carriers: 0

GenotypeQuality
all individuals: 3325
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2268
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1018
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31842
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.185727938834024e-5
allele num: 62780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9582
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 5.838847800700662e-4
allele num: 10276
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.025e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

QD
type: SiteQuality
SIO_000300: 1.351e1

VQSLOD
type: SiteQuality
SIO_000300: 9.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-2

FS
type: SiteQuality
SIO_000300: 5.847e0

DP
type: SiteQuality
SIO_000300: 1.4732e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1094
bin: 4.25e1
variant carriers: 5

GenotypeQuality
all individuals: 3416
bin: 2.25e1
variant carriers: 6

GenotypeQuality
all individuals: 1170
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 683
bin: 2.5e0
variant carriers: 5

GenotypeQuality
all individuals: 1531
bin: 7.5e0
variant carriers: 6

GenotypeQuality
all individuals: 7384
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 263
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 826
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1582
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 951
bin: 1.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1541
bin: 3.75e1
variant carriers: 2

East Asian
type: Population
allele count: 1
allele frequency: 1.197604790419162e-4
allele num: 8350
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.659102995922709e-4
allele num: 11282
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.564102564102564e-3
allele num: 780
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 7.373077733305245e-4
allele num: 9494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 42
allele frequency: 6.773319571668171e-4
allele num: 62008
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.823182711198428e-5
allele num: 10180
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

QD
type: SiteQuality
SIO_000300: 5.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

DP
type: SiteQuality
SIO_000300: 1.473284e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.78e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
all individuals: 703
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3391
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7565
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.217503217503217e-5
allele num: 62160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11292
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

FS
type: SiteQuality
SIO_000300: 1.376e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

QD
type: SiteQuality
SIO_000300: 1.206e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

DP
type: SiteQuality
SIO_000300: 1.472105e6

GenotypeQuality
all individuals: 703
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 36

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 816
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GenotypeQuality
all individuals: 254
bin: 9.25e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 8.855827134254339e-5
allele num: 11292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 35
allele frequency: 5.630630630630631e-4
allele num: 62160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

DP
type: SiteQuality
SIO_000300: 1.472105e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.72e-1

FS
type: SiteQuality
SIO_000300: 1.376e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

QD
type: SiteQuality
SIO_000300: 1.206e1

GenotypeQuality
all individuals: 748
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 260
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GenotypeQuality
all individuals: 456
bin: 9.75e1
variant carriers: 4

Latino
type: Population
allele count: 1
allele frequency: 8.818342151675486e-5
allele num: 11340
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.045806316670153e-4
allele num: 9562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.189894414494881e-5
allele num: 62698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.39e0

VQSLOD
type: SiteQuality
SIO_000300: 8.24e-1

QD
type: SiteQuality
SIO_000300: 1.102e1

FS
type: SiteQuality
SIO_000300: 5.53e0

DP
type: SiteQuality
SIO_000300: 1.464565e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e-1

GenotypeQuality
all individuals: 1473
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 456
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variant carriers: 2

GenotypeQuality
all individuals: 830
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.59494720724744e-5
allele num: 62698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9562
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.818342151675486e-5
allele num: 11340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.75e-1

QD
type: SiteQuality
SIO_000300: 1.102e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.39e0

FS
type: SiteQuality
SIO_000300: 5.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e-1

DP
type: SiteQuality
SIO_000300: 1.464565e6

GenotypeQuality
all individuals: 600
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 451
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variant carriers: 2

GenotypeQuality
all individuals: 409
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.589724023909449e-5
allele num: 62904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10472
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.041232819658476e-4
allele num: 9604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.46778e6

MQRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.091e0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 1.251e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

FS
type: SiteQuality
SIO_000300: 2.935e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 538
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
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variant carriers: 0

GenotypeQuality
all individuals: 1350
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 835
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variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.538344143456696e-5
allele num: 10484
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-1

QD
type: SiteQuality
SIO_000300: 1.461e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.164e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 5.781e1

DP
type: SiteQuality
SIO_000300: 1.46911e6

VQSLOD
type: SiteQuality
SIO_000300: -1.509e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1908
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.178740582981023e-5
allele num: 62918
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.906214258482653e-4
allele num: 10492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.449e0

FS
type: SiteQuality
SIO_000300: 5.639999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.155e1

DP
type: SiteQuality
SIO_000300: 1.470707e6

VQSLOD
type: SiteQuality
SIO_000300: 6.42e-1

GenotypeQuality
all individuals: 294
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 959
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4570
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.76056338028169e-4
allele num: 11360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.79e-1

FS
type: SiteQuality
SIO_000300: 6.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.483082e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.082e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.189e0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 230
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 817
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 442
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GenotypeQuality
all individuals: 824
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.579429510060966e-5
allele num: 63314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.861e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

QD
type: SiteQuality
SIO_000300: 5.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.003e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.499742e6

GenotypeQuality
all individuals: 384
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8082
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variant carriers: 0

GenotypeQuality
all individuals: 2169
bin: 7.25e1
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GenotypeQuality
all individuals: 331
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GenotypeQuality
all individuals: 200
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GenotypeQuality
all individuals: 442
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variant carriers: 1

GenotypeQuality
all individuals: 59
bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 4.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.177856301531213e-4
allele num: 8490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12082
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.948e1

DP
type: SiteQuality
SIO_000300: 1.521217e6

FS
type: SiteQuality
SIO_000300: 1.871e0

VQSLOD
type: SiteQuality
SIO_000300: 9.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.125e0

QD
type: SiteQuality
SIO_000300: 1.188e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

GenotypeQuality
all individuals: 4238
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.565288169552014e-5
allele num: 63886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.139e0

FS
type: SiteQuality
SIO_000300: 1.126e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.998e0

MQRankSum
type: SiteQuality
SIO_000300: -9.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-1

DP
type: SiteQuality
SIO_000300: 1.525632e6

MQ
type: SiteQuality
SIO_000300: 5.878e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.0e-2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.564455569461827e-5
allele num: 63920
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.054e1

MQRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

MQ
type: SiteQuality
SIO_000300: 5.956e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.373e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 2.375e0

DP
type: SiteQuality
SIO_000300: 1.527163e6

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8134
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.605136436597111e-4
allele num: 12460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64008
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.51e-1

DP
type: SiteQuality
SIO_000300: 1.52985e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.47e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

MQRankSum
type: SiteQuality
SIO_000300: 7.44e-1

FS
type: SiteQuality
SIO_000300: 7.64e-1

QD
type: SiteQuality
SIO_000300: 9.779999999999999e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 261
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9922
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.560549313358302e-5
allele num: 64080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12586
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.092e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 1.534638e6

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

MQRankSum
type: SiteQuality
SIO_000300: 4.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-2

MQ
type: SiteQuality
SIO_000300: 5.955e1

QD
type: SiteQuality
SIO_000300: 1.233e1

GenotypeQuality
all individuals: 1898
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 240
bin: 9.25e1
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GenotypeQuality
all individuals: 173
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.746419839329375e-4
allele num: 11452
num of homozygotes: 0

East Asian
type: Population
allele count: 27
allele frequency: 3.165298944900352e-3
allele num: 8530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.523461304082876e-4
allele num: 6564
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.007861318282604e-4
allele num: 9922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 41
allele frequency: 6.398252184769039e-4
allele num: 64080
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.945336087716511e-5
allele num: 12586
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.3e-1

DP
type: SiteQuality
SIO_000300: 1.534638e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

MQ
type: SiteQuality
SIO_000300: 5.955e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-2

FS
type: SiteQuality
SIO_000300: 1.092e0

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2200
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 816
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64144
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.877737513786041e-5
allele num: 12694
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.27e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.943e1

DP
type: SiteQuality
SIO_000300: 1.535526e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.22e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.07e-1

QD
type: SiteQuality
SIO_000300: 1.116e1

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9960
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East Asian
type: Population
allele count: 0
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allele num: 8530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.794961336991769e-5
allele num: 64144
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12694
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 1.535526e6

FS
type: SiteQuality
SIO_000300: 9.07e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.27e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 420
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 239
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548371113588505e-5
allele num: 64584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13310
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.04e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.64e-1

FS
type: SiteQuality
SIO_000300: 8.273e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.897e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.551576e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.69e-1

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41791
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547460617127294e-5
allele num: 64622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.35e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.589e0

FS
type: SiteQuality
SIO_000300: 6.135e0

VQSLOD
type: SiteQuality
SIO_000300: -1.874e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.35e-1

QD
type: SiteQuality
SIO_000300: 8.300000000000001e0

DP
type: SiteQuality
SIO_000300: 1.552322e6

MQ
type: SiteQuality
SIO_000300: 5.919e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.245e0

GenotypeQuality
all individuals: 361
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 367
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.476076555023923e-5
allele num: 13376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.550925e6

FS
type: SiteQuality
SIO_000300: 1.702e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.85e0

VQSLOD
type: SiteQuality
SIO_000300: -3.087e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.399e0

GenotypeQuality
all individuals: 452
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 235
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 809
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variant carriers: 0

GenotypeQuality
all individuals: 2173
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.503307276007216e-4
allele num: 13304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64606
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.155e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.921e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.3e-2

QD
type: SiteQuality
SIO_000300: 1.046e1

DP
type: SiteQuality
SIO_000300: 1.546472e6

VQSLOD
type: SiteQuality
SIO_000300: 4.8e-1

GenotypeQuality
all individuals: 225
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
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GenotypeQuality
all individuals: 7990
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 800
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 285
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variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 9.75e1
variant carriers: 15

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13056
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.17209172433053e-4
allele num: 64454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10078
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.718395815170009e-5
allele num: 11470
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.14e1

DP
type: SiteQuality
SIO_000300: 1.538183e6

FS
type: SiteQuality
SIO_000300: 5.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.93e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.75e-1

GenotypeQuality
all individuals: 230
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variant carriers: 0

GenotypeQuality
all individuals: 548
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
all individuals: 252
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variant carriers: 0

GenotypeQuality
all individuals: 231
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.760119195430842e-5
allele num: 64432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.977963073257892e-4
allele num: 10074
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.67341927562922e-5
allele num: 13032
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.236e1

FS
type: SiteQuality
SIO_000300: 1.138e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.8e0

MQRankSum
type: SiteQuality
SIO_000300: 3.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

DP
type: SiteQuality
SIO_000300: 1.53667e6

GenotypeQuality
all individuals: 919
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2058
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variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.562109472631842e-5
allele num: 64016
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.77e-1

FS
type: SiteQuality
SIO_000300: 1.254e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.875e0

DP
type: SiteQuality
SIO_000300: 1.513622e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.28e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

QD
type: SiteQuality
SIO_000300: 1.088e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563574957783476e-5
allele num: 63956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.537515375153752e-4
allele num: 6504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.961e0

DP
type: SiteQuality
SIO_000300: 1.50624e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

QD
type: SiteQuality
SIO_000300: 2.032e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

MQ
type: SiteQuality
SIO_000300: 5.875e1

GenotypeQuality
all individuals: 7471
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 243
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GenotypeQuality
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GenotypeQuality
all individuals: 32
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 760
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variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63968
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.498950314905528e-4
allele num: 11432
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

QD
type: SiteQuality
SIO_000300: 1.272e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.503843e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e-1

GenotypeQuality
all individuals: 384
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variant carriers: 0

GenotypeQuality
all individuals: 127
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GenotypeQuality
all individuals: 7471
bin: 6.75e1
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GenotypeQuality
all individuals: 2006
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 86
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GenotypeQuality
all individuals: 32
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GenotypeQuality
all individuals: 760
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GenotypeQuality
all individuals: 220
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GenotypeQuality
all individuals: 447
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variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 4.75e1
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GenotypeQuality
all individuals: 243
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variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 306
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.539882968894364e-4
allele num: 6494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.689844922461231e-5
allele num: 63968
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.04634695848085e-5
allele num: 12428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

QD
type: SiteQuality
SIO_000300: 1.272e1

MQRankSum
type: SiteQuality
SIO_000300: -3.76e-1

DP
type: SiteQuality
SIO_000300: 1.503843e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1993
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variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10024
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.263309532757109e-5
allele num: 63864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169590643274854e-4
allele num: 8550
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.097e1

VQSLOD
type: SiteQuality
SIO_000300: 1.61e-1

DP
type: SiteQuality
SIO_000300: 1.499516e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.56e0

MQ
type: SiteQuality
SIO_000300: 5.9e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.615e0

MQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

FS
type: SiteQuality
SIO_000300: 1.686e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 900
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.138020833333333e-5
allele num: 12288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.085e1

DP
type: SiteQuality
SIO_000300: 1.49598e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.316e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.38e-1

FS
type: SiteQuality
SIO_000300: 1.357e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.567054251418184e-5
allele num: 63814
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.992812936713915e-4
allele num: 10018
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.447381302006853e-4
allele num: 12258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

FS
type: SiteQuality
SIO_000300: 2.633e0

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQ
type: SiteQuality
SIO_000300: 5.928e1

MQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

QD
type: SiteQuality
SIO_000300: 1.082e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.56e-1

DP
type: SiteQuality
SIO_000300: 1.494356e6

GenotypeQuality
all individuals: 1969
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 160
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 213
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variant carriers: 2

GenotypeQuality
all individuals: 725
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.459822892751722e-4
allele num: 12196
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.234567901234568e-3
allele num: 810
num of homozygotes: 0

East Asian
type: Population
allele count: 38
allele frequency: 4.447565543071161e-3
allele num: 8544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.568086307470363e-5
allele num: 63772
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10018
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

DP
type: SiteQuality
SIO_000300: 1.489879e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.449e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

QD
type: SiteQuality
SIO_000300: 1.178e1

GenotypeQuality
all individuals: 120
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 210
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GenotypeQuality
all individuals: 531
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11948
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.00080064051241e-4
allele num: 9992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.332e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.39e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.72e-1

DP
type: SiteQuality
SIO_000300: 1.469567e6

QD
type: SiteQuality
SIO_000300: 8.32e0

FS
type: SiteQuality
SIO_000300: 9.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.513e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.00962309542903e-4
allele num: 9976
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.567511994516793e-5
allele num: 11672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
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QD
type: SiteQuality
SIO_000300: 1.157e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.26e-1

FS
type: SiteQuality
SIO_000300: 9.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

DP
type: SiteQuality
SIO_000300: 1.449608e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

GenotypeQuality
all individuals: 30525
bin: 6.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 70

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6360
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.285347043701799e-3
allele num: 778
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.769285208775655e-4
allele num: 11304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.191014104282341e-5
allele num: 62676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 63
allele frequency: 5.922165820642978e-3
allele num: 10638
num of homozygotes: 1

VQSLOD
type: SiteQuality
SIO_000300: 2.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e-1

QD
type: SiteQuality
SIO_000300: 1.219e1

FS
type: SiteQuality
SIO_000300: 5.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

DP
type: SiteQuality
SIO_000300: 1.369831e6

MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.389999999999999e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 470
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.482772033321449e-5
allele num: 61702
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.917424647761727e-5
allele num: 11214
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
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MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.289e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

DP
type: SiteQuality
SIO_000300: 1.31411e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 7.33e0