17-40673011-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673011
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673011
    reference: chr 17
allele count: 1
allele frequency: 8.764549151591641e-6
allele num: 114096
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.2292-34A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.710-34A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.2403-34A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3067A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466852
  ensembl transcript: ENST00000588138
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588138.1:c.555-34A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.2421-34A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.1359-34A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.2421-34A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.328-34A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.242-34A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.2274-34A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.584-34A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.2424-34A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.464-34A>G
  variant of: http://identifiers.org/hgnc/865
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5814
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6593
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6130
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

17-40673020-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673020
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673020
    reference: chr 17
allele count: 20
allele frequency: 1.749138549264487e-4
allele num: 114342
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.2421-25C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.1359-25C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.584-25C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.2274-25C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.2292-25C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3076C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.464-25C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.242-25C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.710-25C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.2403-25C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466852
  ensembl transcript: ENST00000588138
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588138.1:c.555-25C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.2424-25C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.328-25C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.2421-25C>G
  variant of: http://identifiers.org/hgnc/865
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6594
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5815
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

17-40673024-TTTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673024
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673021
    reference: chr 17
allele count: 4
allele frequency: 3.484927687750479e-5
allele num: 114780
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.328-13_328-11delTCT
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3088_3090delTCT
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.2403-13_2403-11delTCT
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.242-13_242-11delTCT
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.2274-13_2274-11delTCT
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.2421-13_2421-11delTCT
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.584-13_584-11delTCT
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.2421-13_2421-11delTCT
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.464-13_464-11delTCT
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.2292-13_2292-11delTCT
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466852
  ensembl transcript: ENST00000588138
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588138.1:c.555-13_555-11delTCT
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.1359-13_1359-11delTCT
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.710-13_710-11delTCT
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.2424-13_2424-11delTCT
  variant of: http://identifiers.org/hgnc/865
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: TTTC
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

17-40673026-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673026
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673026
    reference: chr 17
allele count: 3
allele frequency: 2.611738895756795e-5
allele num: 114866
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.464-19T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.328-19T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3082T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.2421-19T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.2292-19T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.2424-19T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.1359-19T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.2274-19T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.584-19T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.2403-19T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.242-19T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466852
  ensembl transcript: ENST00000588138
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588138.1:c.555-19T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.2421-19T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.710-19T>G
  variant of: http://identifiers.org/hgnc/865
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

17-40673032-TCTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673032
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673029
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 115348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.1359-12_1359-10delCTC
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.2421-12_2421-10delCTC
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.2292-12_2292-10delCTC
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.2421-12_2421-10delCTC
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.242-12_242-10delCTC
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.2424-12_2424-10delCTC
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3089_3091delCTC
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466852
  ensembl transcript: ENST00000588138
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588138.1:c.555-12_555-10delCTC
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.584-12_584-10delCTC
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.2274-12_2274-10delCTC
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.710-12_710-10delCTC
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.328-12_328-10delCTC
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.464-12_464-10delCTC
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.2403-12_2403-10delCTC
  variant of: http://identifiers.org/hgnc/865
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6628
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: TCTC
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ

17-40673039-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673039
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673039
    reference: chr 17
allele count: 1
allele frequency: 8.609260120185271e-6
allele num: 116154
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.1359-6C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.2421-6C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.242-6C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466852
  ensembl transcript: ENST00000588138
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588138.1:c.555-6C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3095C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.2421-6C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.710-6C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.2292-6C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.464-6C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.2424-6C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.328-6C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.2403-6C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.2274-6C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.584-6C>G
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6594
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2424-6C>G
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

17-40673048-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673048
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673048
    reference: chr 17
allele count: 1
allele frequency: 8.498487269266071e-6
allele num: 117668
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.245T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.2277T>G
  hgvsp: ENST00000537728.1:c.2277T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.713T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466852
  ensembl transcript: ENST00000588138
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588138.1:c.558T>G
  hgvsp: ENST00000588138.1:c.558T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.2295T>G
  hgvsp: ENST00000585525.1:c.2295T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.1362T>G
  hgvsp: ENST00000544137.1:c.1362T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.587T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.467T>G
  hgvsp: ENSP00000468177.1:p.Leu156Trp
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.331T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.2427T>G
  hgvsp: ENST00000264649.6:c.2427T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.2406T>G
  hgvsp: ENST00000393829.2:c.2406T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.2424T>G
  hgvsp: ENST00000343619.4:c.2424T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.2424T>G
  hgvsp: ENST00000546249.1:c.2424T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3104T>G
  variant of: http://identifiers.org/hgnc/865
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu156Trp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

17-40673060-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673060
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673060
    reference: chr 17
allele count: 1
allele frequency: 8.400537634408602e-6
allele num: 119040
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.725T>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.2436T>A
  hgvsp: ENSP00000342951.3:p.Asn812Lys
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.1374T>A
  hgvsp: ENSP00000446377.1:p.Asn458Lys
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.2418T>A
  hgvsp: ENSP00000377415.2:p.Asn806Lys
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3116T>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.479T>A
  hgvsp: ENSP00000468177.1:p.Ile160Lys
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.2439T>A
  hgvsp: ENSP00000264649.5:p.Asn813Lys
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.2436T>A
  hgvsp: ENSP00000444676.1:p.Asn812Lys
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.599T>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.2289T>A
  hgvsp: ENSP00000443991.1:p.Asn763Lys
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.343T>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.2307T>A
  hgvsp: ENSP00000466878.1:p.Asn769Lys
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.257T>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466852
  ensembl transcript: ENST00000588138
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588138.1:c.570T>A
  hgvsp: ENSP00000466852.1:p.Asn190Lys
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4061
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn813Lys
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

17-40673060-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673060
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673060
    reference: chr 17
allele count: 14
allele frequency: 1.176075268817204e-4
allele num: 119040
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.1374T>C
  hgvsp: ENST00000544137.1:c.1374T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.2289T>C
  hgvsp: ENST00000537728.1:c.2289T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466852
  ensembl transcript: ENST00000588138
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588138.1:c.570T>C
  hgvsp: ENST00000588138.1:c.570T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.2439T>C
  hgvsp: ENST00000264649.6:c.2439T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.479T>C
  hgvsp: ENSP00000468177.1:p.Ile160Thr
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.2436T>C
  hgvsp: ENST00000546249.1:c.2436T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.2418T>C
  hgvsp: ENST00000393829.2:c.2418T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.343T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.257T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.2436T>C
  hgvsp: ENST00000343619.4:c.2436T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.2307T>C
  hgvsp: ENST00000585525.1:c.2307T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.725T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3116T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.599T>C
  variant of: http://identifiers.org/hgnc/865
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4605
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile160Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

17-40673069-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673069
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673069
    reference: chr 17
allele count: 2
allele frequency: 1.670090351888037e-5
allele num: 119754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.2316C>T
  hgvsp: ENST00000585525.1:c.2316C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.2448C>T
  hgvsp: ENST00000264649.6:c.2448C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.488C>T
  hgvsp: ENSP00000468177.1:p.Thr163Ile
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3125C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.1383C>T
  hgvsp: ENST00000544137.1:c.1383C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.2445C>T
  hgvsp: ENST00000546249.1:c.2445C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.608C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.2298C>T
  hgvsp: ENST00000537728.1:c.2298C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.2427C>T
  hgvsp: ENST00000393829.2:c.2427C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.2445C>T
  hgvsp: ENST00000343619.4:c.2445C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.266C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.352C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.734C>T
  variant of: http://identifiers.org/hgnc/865
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5819
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr163Ile
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

17-40673072-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673072
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673072
    reference: chr 17
allele count: 1
allele frequency: 8.3365290027844e-6
allele num: 119954
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.355C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.611C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.269C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.2451C>T
  hgvsp: ENST00000264649.6:c.2451C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.737C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.2448C>T
  hgvsp: ENST00000343619.4:c.2448C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3128C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.491C>T
  hgvsp: ENSP00000468177.1:p.Ala164Val
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.1386C>T
  hgvsp: ENST00000544137.1:c.1386C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.2430C>T
  hgvsp: ENST00000393829.2:c.2430C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.2319C>T
  hgvsp: ENST00000585525.1:c.2319C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.2448C>T
  hgvsp: ENST00000546249.1:c.2448C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.2301C>T
  hgvsp: ENST00000537728.1:c.2301C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5820
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6596
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala164Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-40673078-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673078
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673078
    reference: chr 17
allele count: 1
allele frequency: 8.311999202048076e-6
allele num: 120308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.2436C>T
  hgvsp: ENST00000393829.2:c.2436C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.2454C>T
  hgvsp: ENST00000546249.1:c.2454C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.1392C>T
  hgvsp: ENST00000544137.1:c.1392C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.2457C>T
  hgvsp: ENST00000264649.6:c.2457C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3134C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.361C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.497C>T
  hgvsp: ENSP00000468177.1:p.Pro166Leu
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.2325C>T
  hgvsp: ENST00000585525.1:c.2325C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.2454C>T
  hgvsp: ENST00000343619.4:c.2454C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.617C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.2307C>T
  hgvsp: ENST00000537728.1:c.2307C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.275C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.743C>T
  variant of: http://identifiers.org/hgnc/865
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5820
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6628
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro166Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

17-40673095-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673095
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673095
    reference: chr 17
allele count: 5
allele frequency: 4.151375765928829e-5
allele num: 120442
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.1409C>G
  hgvsp: ENSP00000446377.1:p.Pro470Arg
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3151C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.2471C>G
  hgvsp: ENSP00000444676.1:p.Pro824Arg
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.514C>G
  hgvsp: ENSP00000468177.1:p.Pro172Ala
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.378C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.2471C>G
  hgvsp: ENSP00000342951.3:p.Pro824Arg
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.634C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.2453C>G
  hgvsp: ENSP00000377415.2:p.Pro818Arg
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.2324C>G
  hgvsp: ENSP00000443991.1:p.Pro775Arg
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.2474C>G
  hgvsp: ENSP00000264649.5:p.Pro825Arg
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.760C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.292C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.2342C>G
  hgvsp: ENSP00000466878.1:p.Pro781Arg
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5820
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro825Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

17-40673105-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673105
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673105
    reference: chr 17
allele count: 1
allele frequency: 8.307303781484682e-6
allele num: 120376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.524C>T
  hgvsp: ENSP00000468177.1:p.Ser175Leu
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.2334C>T
  hgvsp: ENST00000537728.1:c.2334C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.644C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.2481C>T
  hgvsp: ENST00000546249.1:c.2481C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.2352C>T
  hgvsp: ENST00000585525.1:c.2352C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3161C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.388C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.302C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.2463C>T
  hgvsp: ENST00000393829.2:c.2463C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.770C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.2484C>T
  hgvsp: ENST00000264649.6:c.2484C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.1419C>T
  hgvsp: ENST00000544137.1:c.1419C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.2481C>T
  hgvsp: ENST00000343619.4:c.2481C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5821
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser175Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

17-40673110-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673110
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673110
    reference: chr 17
allele count: 1
allele frequency: 8.314487162431821e-6
allele num: 120272
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.2357A>G
  hgvsp: ENSP00000466878.1:p.His786Arg
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.2339A>G
  hgvsp: ENSP00000443991.1:p.His780Arg
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.2489A>G
  hgvsp: ENSP00000264649.5:p.His830Arg
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.2486A>G
  hgvsp: ENSP00000444676.1:p.His829Arg
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.307A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.2486A>G
  hgvsp: ENSP00000342951.3:p.His829Arg
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.775A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.529A>G
  hgvsp: ENSP00000468177.1:p.Ile177Val
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.1424A>G
  hgvsp: ENSP00000446377.1:p.His475Arg
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3166A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.649A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.2468A>G
  hgvsp: ENSP00000377415.2:p.His823Arg
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.393A>G
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5907
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5821
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His830Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ

17-40673114-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673114
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673114
    reference: chr 17
allele count: 1
allele frequency: 8.321129010784183e-6
allele num: 120176
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.2490T>C
  hgvsp: ENST00000343619.4:c.2490T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.2361T>C
  hgvsp: ENST00000585525.1:c.2361T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.779T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.311T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.2343T>C
  hgvsp: ENST00000537728.1:c.2343T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3170T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.1428T>C
  hgvsp: ENST00000544137.1:c.1428T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.2472T>C
  hgvsp: ENST00000393829.2:c.2472T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.533T>C
  hgvsp: ENSP00000468177.1:p.Phe178Ser
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.2493T>C
  hgvsp: ENST00000264649.6:c.2493T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.653T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.397T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.2490T>C
  hgvsp: ENST00000546249.1:c.2490T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/865
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe178Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

17-40673115-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673115
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673115
    reference: chr 17
allele count: 1
allele frequency: 8.323899580475461e-6
allele num: 120136
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.2362C>G
  hgvsp: ENSP00000466878.1:p.Arg788Gly
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.2491C>G
  hgvsp: ENSP00000444676.1:p.Arg831Gly
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.654C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.312C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.2344C>G
  hgvsp: ENSP00000443991.1:p.Arg782Gly
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.2494C>G
  hgvsp: ENSP00000264649.5:p.Arg832Gly
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.780C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.398C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.2491C>G
  hgvsp: ENSP00000342951.3:p.Arg831Gly
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.2473C>G
  hgvsp: ENSP00000377415.2:p.Arg825Gly
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.1429C>G
  hgvsp: ENSP00000446377.1:p.Arg477Gly
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.534C>G
  hgvsp: ENSP00000468177.1:p.Phe178Leu
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3171C>G
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6596
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5821
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg832Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP

17-40673115-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673115
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673115
    reference: chr 17
allele count: 1
allele frequency: 8.323899580475461e-6
allele num: 120136
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3171C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.398C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.2344C>T
  hgvsp: ENSP00000443991.1:p.Arg782Trp
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.2473C>T
  hgvsp: ENSP00000377415.2:p.Arg825Trp
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.2491C>T
  hgvsp: ENSP00000444676.1:p.Arg831Trp
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.534C>T
  hgvsp: ENST00000586201.1:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.2491C>T
  hgvsp: ENSP00000342951.3:p.Arg831Trp
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.312C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.1429C>T
  hgvsp: ENSP00000446377.1:p.Arg477Trp
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.2494C>T
  hgvsp: ENSP00000264649.5:p.Arg832Trp
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.780C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.654C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.2362C>T
  hgvsp: ENSP00000466878.1:p.Arg788Trp
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5821
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6596
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg832Trp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

17-40673116-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673116
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673116
    reference: chr 17
allele count: 1
allele frequency: 8.328613785521537e-6
allele num: 120068
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.2474G>A
  hgvsp: ENSP00000377415.2:p.Arg825Gln
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.399G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.2492G>A
  hgvsp: ENSP00000342951.3:p.Arg831Gln
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.313G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.2345G>A
  hgvsp: ENSP00000443991.1:p.Arg782Gln
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.2363G>A
  hgvsp: ENSP00000466878.1:p.Arg788Gln
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.2492G>A
  hgvsp: ENSP00000444676.1:p.Arg831Gln
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.1430G>A
  hgvsp: ENSP00000446377.1:p.Arg477Gln
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3172G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.535G>A
  hgvsp: ENSP00000468177.1:p.Gly179Arg
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.655G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.2495G>A
  hgvsp: ENSP00000264649.5:p.Arg832Gln
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.781G>A
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6598
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg832Gln
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/17-40673132-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673132
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673132
    reference: chr 17
allele count: 1
allele frequency: 8.386728840283135e-6
allele num: 119236
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.2511A>C
  hgvsp: ENSP00000264649.5:p.Glu837Asp
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.2508A>C
  hgvsp: ENSP00000444676.1:p.Glu836Asp
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.551A>C
  hgvsp: ENSP00000468177.1:p.Lys184Thr
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.797A>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.671A>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.1446A>C
  hgvsp: ENSP00000446377.1:p.Glu482Asp
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.2379A>C
  hgvsp: ENSP00000466878.1:p.Glu793Asp
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.415A>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.2361A>C
  hgvsp: ENSP00000443991.1:p.Glu787Asp
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3188A>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.329A>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.2508A>C
  hgvsp: ENSP00000342951.3:p.Glu836Asp
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.2490A>C
  hgvsp: ENSP00000377415.2:p.Glu830Asp
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu837Asp
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-40673134-AGT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673134
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673132
    reference: chr 17
allele count: 1
allele frequency: 8.397433744247758e-6
allele num: 119084
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.419_420delTG
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: frameshift_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.2365_2366delTG
  hgvsp: ENSP00000443991.1:p.Ter789Ser
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: frameshift_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.1450_1451delTG
  hgvsp: ENSP00000446377.1:p.Ter484Ser
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.555_556delTG
  hgvsp: ENSP00000468177.1:p.Ser185ArgfsTer47
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: frameshift_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.2512_2513delTG
  hgvsp: ENSP00000342951.3:p.Ter838Ser
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: frameshift_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.2494_2495delTG
  hgvsp: ENSP00000377415.2:p.Ter832Ser
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: frameshift_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.2512_2513delTG
  hgvsp: ENSP00000444676.1:p.Ter838Ser
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3192_3193delTG
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.675_676delTG
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: stop_lost
  consequence: frameshift_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.2515_2516delTG
  hgvsp: ENSP00000264649.5:p.Ter839Ser
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.801_802delTG
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.333_334delTG
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: frameshift_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.2383_2384delTG
  hgvsp: ENSP00000466878.1:p.Ter795Ser
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ter839Ser
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: AGT
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

17-40673141-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673141
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673141
    reference: chr 17
allele count: 1
allele frequency: 8.449228585430151e-6
allele num: 118354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.560C>T
  hgvsp: ENSP00000468177.1:p.Ser187Phe
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.338C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3197C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.*3C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.*3C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.*3C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.680C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.*3C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.*3C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.*3C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.806C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.*3C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.424C>T
  variant of: http://identifiers.org/hgnc/865
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6594
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6628
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser187Phe
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

17-40673143-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673143
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673143
    reference: chr 17
allele count: 1
allele frequency: 8.466540232999188e-6
allele num: 118112
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.*5C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.*5C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.340C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.*5C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.562C>T
  hgvsp: ENST00000586201.1:c.562C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.682C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.808C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.426C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3199C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.*5C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.*5C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.*5C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.*5C>T
  variant of: http://identifiers.org/hgnc/865
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6594
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu188Leu
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

17-40673145-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673145
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673145
    reference: chr 17
allele count: 1
allele frequency: 8.485218748939348e-6
allele num: 117852
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.342G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.*7G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.810G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.*7G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.*7G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.*7G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.*7G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.564G>A
  hgvsp: ENST00000586201.1:c.564G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.684G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3201G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.428G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.*7G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.*7G>A
  variant of: http://identifiers.org/hgnc/865
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6593
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu188Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

17-40673147-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673147
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673147
    reference: chr 17
allele count: 1
allele frequency: 8.485362749257531e-6
allele num: 117850
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.*9G>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.566G>T
  hgvsp: ENSP00000468177.1:p.Ter189LeuextTer15
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.*9G>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.*9G>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.686G>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.812G>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.*9G>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.*9G>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.344G>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.*9G>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.*9G>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.430G>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3203G>T
  variant of: http://identifiers.org/hgnc/865
canonical: false
consequence: stop lost
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6593
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ter189LeuextTer15
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

17-40673153-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673153
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673153
    reference: chr 17
allele count: 2
allele frequency: 1.704361460978644e-5
allele num: 117346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.*5C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.*15C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.*15C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.*15C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.*15C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.350C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.*15C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.692C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3209C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.*15C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.*15C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.436C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.818C>T
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6593
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

17-40673154-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673154
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673154
    reference: chr 17
allele count: 2305
allele frequency: 1.966387988397884e-2
allele num: 117220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.*6G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3210G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.*16G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.*16G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.819G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.437G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.*16G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.693G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.351G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.*16G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.*16G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.*16G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.*16G>A
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 6642
  bin: 4.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 3.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 5.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 9.25e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 6604
  bin: 4.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 8.75e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 8.25e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6145
  bin: 3.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 6.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 7.75e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 9.75e1
  variant carriers: 972
genotype quality: GenotypeQuality
num of homozygotes: 240
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

17-40673154-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673154
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673154
    reference: chr 17
allele count: 1
allele frequency: 8.530967411704487e-6
allele num: 117220
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.*16G>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.*16G>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.*16G>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.351G>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.*6G>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.*16G>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.819G>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.693G>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3210G>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.*16G>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.*16G>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.437G>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.*16G>T
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6604
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

17-40673159-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673159
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673159
    reference: chr 17
allele count: 1
allele frequency: 8.578830876928093e-6
allele num: 116566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.*21C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.356C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.698C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.*21C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.442C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.*21C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.*21C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3215C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.*21C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.*21C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.824C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.*21C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.*11C>T
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5995
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6836
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4726
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-40673166-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673166
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673166
    reference: chr 17
allele count: 1
allele frequency: 8.633491038436302e-6
allele num: 115828
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.831C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.*28C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.*28C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.705C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.*18C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.*28C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.*28C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3222C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.*28C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.*28C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.449C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.*28C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.363C>T
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6817
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4723
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

17-40673167-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673167
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673167
    reference: chr 17
allele count: 1
allele frequency: 8.627532180695034e-6
allele num: 115908
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.*29T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.*29T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.*19T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.*29T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.*29T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.450T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.706T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.*29T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.364T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.*29T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.*29T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3223T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.832T>C
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5995
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6775
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/17-40673168-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673168
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673168
    reference: chr 17
allele count: 190
allele frequency: 1.700923870228461e-3
allele num: 111704
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.*30A>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.*30A>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.365A>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.451A>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3224A>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.*20A>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.*30A>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.707A>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.*30A>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.*30A>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.*30A>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.833A>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.*30A>C
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 7.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6391
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7130
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3794
  bin: 6.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 6.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4983
  bin: 5.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 6331
  bin: 5.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

17-40673172-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673172
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673172
    reference: chr 17
allele count: 3
allele frequency: 2.610647962824373e-5
allele num: 114914
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.*34T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.*24T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.*34T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3228T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.*34T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.*34T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.711T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.455T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.*34T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.*34T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.*34T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.837T>C
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.369T>C
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6328
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5930
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: T
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

17-40673174-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673174
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673174
    reference: chr 17
allele count: 4
allele frequency: 3.478986919009184e-5
allele num: 114976
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.*36C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.*36C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.*36C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3230C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.713C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.371C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.*36C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.*26C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.457C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.*36C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.839C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.*36C>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.*36C>G
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7135
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/17-40673176-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673176
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673176
    reference: chr 17
allele count: 1
allele frequency: 8.720980935935674e-6
allele num: 114666
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.*38C>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.*38C>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.373C>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.715C>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3232C>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.459C>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.841C>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.*28C>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.*38C>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.*38C>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.*38C>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.*38C>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.*38C>A
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7123
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

17-40673176-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673176
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673176
    reference: chr 17
allele count: 1
allele frequency: 8.720980935935674e-6
allele num: 114666
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3232C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.373C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.*38C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.*38C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.459C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.*38C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.*28C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.*38C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.*38C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.841C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.*38C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.*38C>T
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.715C>T
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-40673177-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673177
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673177
    reference: chr 17
allele count: 14
allele frequency: 1.22119293103749e-4
allele num: 114642
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.*39G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.374G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.*29G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000588806
  gene symbol: ATP6V0A1
  hgvsc: ENST00000588806.1:n.842G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.*39G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.*39G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.*39G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.*39G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.*39G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.716G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.460G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.*39G>A
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3233G>A
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7121
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7144
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3886
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6327
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

17-40673189-AGTGAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673189
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673184
    reference: chr 17
allele count: 1
allele frequency: 8.785030308354564e-6
allele num: 113830
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.*52_*56delGTGAT
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3246_3250delGTGAT
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.*52_*56delGTGAT
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.*52_*56delGTGAT
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.*52_*56delGTGAT
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.*42_*46delGTGAT
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.*52_*56delGTGAT
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.473_477delGTGAT
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.387_391delGTGAT
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.729_733delGTGAT
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.*52_*56delGTGAT
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.*52_*56delGTGAT
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: AGTGAT
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

17-40673191-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673191
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673191
    reference: chr 17
allele count: 1
allele frequency: 8.809951721464566e-6
allele num: 113508
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.474T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.*53T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.*53T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.*43T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.*53T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.*53T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.*53T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.*53T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.388T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.*53T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.730T>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3247T>G
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7053
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4894
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

17-40673196-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673196
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673196
    reference: chr 17
allele count: 1
allele frequency: 8.814611099358297e-6
allele num: 113448
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.*58A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.*58A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.*58A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.*58A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.393A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.479A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.*58A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.*58A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.735A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.*48A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3252A>G
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.*58A>G
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6313
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4896
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD

17-40673196-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40673196
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40673195
    reference: chr 17
allele count: 1
allele frequency: 8.814611099358297e-6
allele num: 113448
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000443991
  ensembl transcript: ENST00000537728
  gene symbol: ATP6V0A1
  hgvsc: ENST00000537728.1:c.*59delG
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587299
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587299.1:n.394delG
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000587797
  gene symbol: ATP6V0A1
  hgvsc: ENST00000587797.1:n.480delG
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000377415
  ensembl transcript: ENST00000393829
  gene symbol: ATP6V0A1
  hgvsc: ENST00000393829.2:c.*59delG
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000446377
  ensembl transcript: ENST00000544137
  gene symbol: ATP6V0A1
  hgvsc: ENST00000544137.1:c.*59delG
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000444676
  ensembl transcript: ENST00000546249
  gene symbol: ATP6V0A1
  hgvsc: ENST00000546249.1:c.*59delG
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000264649
  ensembl transcript: ENST00000264649
  gene symbol: ATP6V0A1
  hgvsc: ENST00000264649.6:c.*59delG
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000592831
  gene symbol: ATP6V0A1
  hgvsc: ENST00000592831.1:n.3253delG
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000466878
  ensembl transcript: ENST00000585525
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585525.1:c.*59delG
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000033627
  ensembl transcript: ENST00000585828
  gene symbol: ATP6V0A1
  hgvsc: ENST00000585828.1:n.736delG
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000342951
  ensembl transcript: ENST00000343619
  gene symbol: ATP6V0A1
  hgvsc: ENST00000343619.4:c.*59delG
  variant of: http://identifiers.org/hgnc/865
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000033627
  ensembl protein: ENSP00000468177
  ensembl transcript: ENST00000586201
  gene symbol: ATP6V0A1
  hgvsc: ENST00000586201.1:c.*49delG
  variant of: http://identifiers.org/hgnc/865
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4896
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: AG
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

17-40688261-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40688261
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40688261
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 74
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.-30G>A
  variant of: http://identifiers.org/hgnc/7632
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2899
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 30
  num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

17-40688337-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40688337
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40688337
    reference: chr 17
allele count: 1
allele frequency: 1.351351351351351e-2
allele num: 74
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.47C>T
  hgvsp: ENSP00000225927.1:p.Ala16Val
  variant of: http://identifiers.org/hgnc/7632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2145
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala16Val
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD

17-40688566-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40688566
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40688566
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 4366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.19C>T
  hgvsp: ENSP00000467836.1:p.Pro7Ser
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.276C>T
  hgvsp: ENST00000225927.2:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.26C>T
  hgvsp: ENSP00000467135.1:p.Pro10Ser
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.39C>T
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7921
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32450
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31965
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7579
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro7Ser
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD

17-40688578-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40688578
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40688578
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 5462
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.31C>T
  hgvsp: ENST00000591587.1:c.31C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.288C>T
  hgvsp: ENST00000225927.2:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.38C>T
  hgvsp: ENST00000586516.1:c.38C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.51C>T
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 9071
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31796
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30822
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7952
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe96Phe
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

17-40688611-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40688611
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40688611
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 7026
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.321G>A
  hgvsp: ENST00000225927.2:c.321G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.64G>A
  hgvsp: ENSP00000467836.1:p.Ala22Thr
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.71G>A
  hgvsp: ENSP00000467135.1:p.Ala25Thr
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.84G>A
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8709
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29181
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6672
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2567
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1600
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala22Thr
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

17-40688632-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40688632
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40688632
    reference: chr 17
allele count: 4
allele frequency: 5.175983436853002e-4
allele num: 7728
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.85G>A
  hgvsp: ENSP00000467836.1:p.Ala29Thr
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.105G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.342G>A
  hgvsp: ENST00000225927.2:c.342G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.92G>A
  hgvsp: ENSP00000467135.1:p.Ala32Thr
  variant of: http://identifiers.org/hgnc/7632
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32509
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4598
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29705
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3319
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala29Thr
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

17-40688633-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40688633
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40688633
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 7812
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.106C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.343C>T
  hgvsp: ENSP00000225927.1:p.Pro115Ser
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.93C>T
  hgvsp: ENSP00000467135.1:p.Ala32Val
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.86C>T
  hgvsp: ENSP00000467836.1:p.Ala29Val
  variant of: http://identifiers.org/hgnc/7632
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6317
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2595
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4975
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31000
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro115Ser
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

17-40688638-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40688638
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40688638
    reference: chr 17
allele count: 2
allele frequency: 2.49500998003992e-4
allele num: 8016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.98C>T
  hgvsp: ENSP00000467135.1:p.Arg34Cys
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.111C>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.348C>T
  hgvsp: ENST00000225927.2:c.348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.91C>T
  hgvsp: ENSP00000467836.1:p.Arg31Cys
  variant of: http://identifiers.org/hgnc/7632
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 33758
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2159
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31921
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5054
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2433
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg31Cys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

17-40688640-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40688640
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40688640
    reference: chr 17
allele count: 1
allele frequency: 1.23395853899309e-4
allele num: 8104
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.350T>C
  hgvsp: ENSP00000225927.1:p.Val117Ala
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.100T>C
  hgvsp: ENST00000586516.1:c.100T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.113T>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.93T>C
  hgvsp: ENST00000591587.1:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7632
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33804
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4944
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32037
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2530
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2042
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val117Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

17-40688642-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40688642
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40688642
    reference: chr 17
allele count: 1
allele frequency: 1.232134056185313e-4
allele num: 8116
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.102C>T
  hgvsp: ENSP00000467135.1:p.Ala35Val
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.95C>T
  hgvsp: ENSP00000467836.1:p.Ala32Val
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.352C>T
  hgvsp: ENSP00000225927.1:p.Pro118Ser
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.115C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33791
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2205
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4870
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31959
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2586
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro118Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP

17-40688643-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40688643
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40688643
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 8162
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.103C>T
  hgvsp: ENST00000586516.1:c.103C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.96C>T
  hgvsp: ENST00000591587.1:c.96C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.353C>T
  hgvsp: ENSP00000225927.1:p.Pro118Leu
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.116C>T
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33787
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4854
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2616
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32014
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro118Leu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

17-40688644-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40688644
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40688644
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 8166
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.354G>A
  hgvsp: ENST00000225927.2:c.354G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.97G>A
  hgvsp: ENSP00000467836.1:p.Gly33Arg
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.104G>A
  hgvsp: ENSP00000467135.1:p.Gly36Arg
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.117G>A
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5646
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33854
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2069
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4852
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2666
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32170
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly33Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-40688656-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40688656
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40688656
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 8350
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.109C>G
  hgvsp: ENSP00000467836.1:p.Arg37Gly
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.366C>G
  hgvsp: ENST00000225927.2:c.366C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.116C>G
  hgvsp: ENSP00000467135.1:p.Arg40Gly
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.129C>G
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33052
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4516
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2036
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31311
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3963
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg37Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD

17-40688674-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40688674
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40688674
    reference: chr 17
allele count: 1
allele frequency: 1.225790634959549e-4
allele num: 8158
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.383+1G>T
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.146+1G>T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.133+1G>T
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.126+1G>T
  variant of: http://identifiers.org/hgnc/7632
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29686
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27362
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2504
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2675
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2833
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
hgvs: n.146+1G>T
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP

17-40688678-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40688678
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40688678
    reference: chr 17
allele count: 1
allele frequency: 1.237011380504701e-4
allele num: 8084
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.126+5C>T
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.146+5C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.133+5C>T
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.383+5C>T
  variant of: http://identifiers.org/hgnc/7632
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2669
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28787
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26375
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2769
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
hgvs: n.146+5C>T
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

17-40688680-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40688680
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40688680
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 8086
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.126+7C>T
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.146+7C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.133+7C>T
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.383+7C>T
  variant of: http://identifiers.org/hgnc/7632
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28644
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2825
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26484
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2393
  bin: 6.25e1
  variant carriers: 0
hgvs: n.146+7C>T
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP

17-40688681-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40688681
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40688681
    reference: chr 17
allele count: 1
allele frequency: 1.251877816725087e-4
allele num: 7988
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.126+8C>T
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.146+8C>T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.383+8C>T
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.133+8C>T
  variant of: http://identifiers.org/hgnc/7632
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27501
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2736
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3052
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2143
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
hgvs: n.146+8C>T
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

17-40688687-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40688687
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40688687
    reference: chr 17
allele count: 1
allele frequency: 1.280081925243216e-4
allele num: 7812
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.126+14G>A
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.146+14G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.383+14G>A
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.133+14G>A
  variant of: http://identifiers.org/hgnc/7632
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26269
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3177
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23360
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2825
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

17-40688701-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40688701
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40688701
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 6888
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.383+28G>T
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.146+28G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.126+28G>T
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.133+28G>T
  variant of: http://identifiers.org/hgnc/7632
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23001
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17752
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5457
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2935
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-40688718-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40688718
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40688718
    reference: chr 17
allele count: 12
allele frequency: 2.685765443151298e-3
allele num: 4468
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.146+45C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.126+45C>T
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.133+45C>T
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.383+45C>T
  variant of: http://identifiers.org/hgnc/7632
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21665
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9486
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12552
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-40688718-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40688718
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40688718
    reference: chr 17
allele count: 44
allele frequency: 9.847806624888093e-3
allele num: 4468
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.383+45C>G
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.146+45C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.126+45C>G
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.133+45C>G
  variant of: http://identifiers.org/hgnc/7632
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21665
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9486
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12552
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

17-40688722-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40688722
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40688722
    reference: chr 17
allele count: 6
allele frequency: 1.388888888888889e-3
allele num: 4320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.133+49C>T
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.146+49C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.126+49C>T
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.383+49C>T
  variant of: http://identifiers.org/hgnc/7632
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21910
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9541
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1592
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 12723
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/17-40689297-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40689297
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40689297
    reference: chr 17
allele count: 1
allele frequency: 1.040366208905535e-5
allele num: 96120
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000466892
  ensembl transcript: ENST00000590358
  gene symbol: NAGLU
  hgvsc: ENST00000590358.1:c.-48A>C
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.146+624A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.133+624A>C
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.126+624A>C
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.384-119A>C
  variant of: http://identifiers.org/hgnc/7632
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14638
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3571
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6240
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2488
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3723
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5843
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8760
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4735
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7969
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7537
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-40689300-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40689300
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40689300
    reference: chr 17
allele count: 23
allele frequency: 2.388568105346238e-4
allele num: 96292
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.384-116A>C
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.133+627A>C
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.126+627A>C
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000466892
  ensembl transcript: ENST00000590358
  gene symbol: NAGLU
  hgvsc: ENST00000590358.1:c.-45A>C
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.146+627A>C
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18819
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10803
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12776
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3500
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5337
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7888
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7488
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4716
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 9.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 9432
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

17-40689304-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40689304
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40689304
    reference: chr 17
allele count: 1
allele frequency: 1.033292690487508e-5
allele num: 96778
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.384-112G>A
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.126+631G>A
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.133+631G>A
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000466892
  ensembl transcript: ENST00000590358
  gene symbol: NAGLU
  hgvsc: ENST00000590358.1:c.-41G>A
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.146+631G>A
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9926
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7156
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7727
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11626
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10253
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3118
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-40689308-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40689308
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40689308
    reference: chr 17
allele count: 1
allele frequency: 1.028785415937944e-5
allele num: 97202
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.133+635C>A
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.146+635C>A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000466892
  ensembl transcript: ENST00000590358
  gene symbol: NAGLU
  hgvsc: ENST00000590358.1:c.-37C>A
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.384-108C>A
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.126+635C>A
  variant of: http://identifiers.org/hgnc/7632
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17462
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16992
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10618
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2444
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3209
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15298
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6279
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4465
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

17-40689308-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40689308
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40689308
    reference: chr 17
allele count: 1
allele frequency: 1.028785415937944e-5
allele num: 97202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000466892
  ensembl transcript: ENST00000590358
  gene symbol: NAGLU
  hgvsc: ENST00000590358.1:c.-37C>T
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.126+635C>T
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.384-108C>T
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.146+635C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.133+635C>T
  variant of: http://identifiers.org/hgnc/7632
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16992
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17462
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4465
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3209
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2444
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6279
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7286
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10618
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15298
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

17-40689321-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40689321
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40689321
    reference: chr 17
allele count: 1
allele frequency: 9.762955441871364e-6
allele num: 102428
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467135
  ensembl transcript: ENST00000586516
  gene symbol: NAGLU
  hgvsc: ENST00000586516.1:c.133+648C>T
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000225927
  ensembl transcript: ENST00000225927
  gene symbol: NAGLU
  hgvsc: ENST00000225927.2:c.384-95C>T
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266929
  ensembl transcript: ENST00000585572
  gene symbol: RP11-400F19.8
  hgvsc: ENST00000585572.1:n.146+648C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.126+648C>T
  variant of: http://identifiers.org/hgnc/7632
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000466892
  ensembl transcript: ENST00000590358
  gene symbol: NAGLU
  hgvsc: ENST00000590358.1:c.-24C>T
  variant of: http://identifiers.org/hgnc/7632
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8487
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2358
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8904
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2925
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

17-40689322-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40689322
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40689322
    reference: chr 17
allele count: 1
allele frequency: 9.692928039702233e-6
allele num: 103168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108784
  ensembl protein: ENSP00000467836
  ensembl transcript: ENST00000591587
  gene symbol: NAGLU
  hgvsc: ENST00000591587.1:c.126+649C>G
  variant of: http://identifiers.org/hgnc/7632
canonical: false
consequence: 5' UTR
filter: PASS
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 5815
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1171
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6627
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 596
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4606
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5984
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3335
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2625
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3277
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3484
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4012
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31025
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2075
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541924939093965e-5
allele num: 64854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.528e0

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 2.908513e6

MQRankSum
type: SiteQuality
SIO_000300: 9.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 6.072e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 1.542e1

GenotypeDepth
all individuals: 4604
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2104
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1622
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 595
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6626
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6242
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3281
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2834
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2076
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4033
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31027
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 3484
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3338
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

African
type: Population
allele count: 20
allele frequency: 1.958863858961802e-3
allele num: 10210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64914
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11616
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.325e1

FS
type: SiteQuality
SIO_000300: 2.357e0

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.05e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 3.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-1

DP
type: SiteQuality
SIO_000300: 2.914732e6

GenotypeDepth
all individuals: 595
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6626
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6595
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2141
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 5816
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2865
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4041
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6361
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2076
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3484
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3339
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31026
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3281
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.075219878221293e-5
allele num: 65036
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.396305625524769e-5
allele num: 11910
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.677542519958348e-5
allele num: 11524
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.88e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e-1

QD
type: SiteQuality
SIO_000300: 1.777e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.75e-1

FS
type: SiteQuality
SIO_000300: 1.274e0

MQ
type: SiteQuality
SIO_000300: 5.745e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.29e-1

DP
type: SiteQuality
SIO_000300: 2.916444e6

GenotypeDepth
all individuals: 595
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5824
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1534
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3700
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1622
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3339
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3484
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6436
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4045
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2077
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31024
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3281
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2837
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.074558032282859e-5
allele num: 65050
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.351428094204109e-5
allele num: 11974
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

DP
type: SiteQuality
SIO_000300: 2.917595e6

VQSLOD
type: SiteQuality
SIO_000300: 9.16e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

FS
type: SiteQuality
SIO_000300: 2.085e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.79e0

QD
type: SiteQuality
SIO_000300: 1.461e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.37e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

GenotypeDepth
all individuals: 6132
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 870
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2106
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6595
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2847
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3338
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6862
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4062
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2788
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3282
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2083
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31024
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3485
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65154
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.922715e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.164e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

MQ
type: SiteQuality
SIO_000300: 5.824e1

GenotypeDepth
all individuals: 870
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2494
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3748
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2428
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2848
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3700
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1622
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6133
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2136
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7430
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2467
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3287
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4082
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2087
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3485
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31023
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2023
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3338
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65366
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12876
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.486e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.898e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.539e0

VQSLOD
type: SiteQuality
SIO_000300: -7.997e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

DP
type: SiteQuality
SIO_000300: 2.931745e6

GenotypeDepth
all individuals: 88
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6628
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4605
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2136
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 870
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6594
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2106
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1173
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4162
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8503
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3344
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3290
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3485
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2089
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31022
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1806
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521051350693599e-5
allele num: 65744
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13914
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.947038e6

MQRankSum
type: SiteQuality
SIO_000300: 9.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e0

FS
type: SiteQuality
SIO_000300: 1.755e0

QD
type: SiteQuality
SIO_000300: 1.186e1

VQSLOD
type: SiteQuality
SIO_000300: 4.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-2

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeDepth
all individuals: 1173
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5863
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6595
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2136
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2106
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 869
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4605
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 596
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9453
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2105
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1150
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4223
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3486
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3346
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3296
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31024
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2027
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66120
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.738544474393532e-5
allele num: 14840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 2.963303e6

QD
type: SiteQuality
SIO_000300: 1.381e1

MQRankSum
type: SiteQuality
SIO_000300: 3.85e-1

FS
type: SiteQuality
SIO_000300: 5.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.02e0

GenotypeDepth
all individuals: 4332
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5816
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 596
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2847
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3700
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4061
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 328
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 869
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4223
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31024
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 1150
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9453
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3296
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2105
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3486
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3346
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.663641863278887e-4
allele num: 66120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14840
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.891287586738628e-4
allele num: 10376
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.95e0

MQRankSum
type: SiteQuality
SIO_000300: 3.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 2.963303e6

QD
type: SiteQuality
SIO_000300: 1.381e1

GenotypeDepth
all individuals: 6628
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1173
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2847
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4743
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 869
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3485
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31023
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 44
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9931
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3346
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4250
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2109
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3302
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.303950971443474e-4
allele num: 15338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.984e1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 2.967731e6

FS
type: SiteQuality
SIO_000300: 1.474e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.132e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.86e-1

QD
type: SiteQuality
SIO_000300: 1.127e1

GenotypeDepth
all individuals: 6629
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4813
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1623
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2108
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1174
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2028
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10049
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3308
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3346
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2110
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3485
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31022
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4254
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.733e0

DP
type: SiteQuality
SIO_000300: 2.969969e6

QD
type: SiteQuality
SIO_000300: 1.251e1

MQ
type: SiteQuality
SIO_000300: 5.954e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

MQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.28e-1

GenotypeDepth
all individuals: 6138
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2847
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1173
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 595
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 869
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3348
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2122
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4285
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10288
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31021
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3485
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3312
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.193e1

FS
type: SiteQuality
SIO_000300: 1.632e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

VQSLOD
type: SiteQuality
SIO_000300: 9.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.973029e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 2123
bin: 9.75e1
variant carriers: 4

GenotypeDepth
all individuals: 6595
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1623
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6628
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5907
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31021
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3350
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3485
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4298
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3313
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10280
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.15059861373661e-4
allele num: 15870
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.973e1

FS
type: SiteQuality
SIO_000300: 1.182e0

DP
type: SiteQuality
SIO_000300: 2.974649e6

VQSLOD
type: SiteQuality
SIO_000300: 8.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-2

QD
type: SiteQuality
SIO_000300: 1.254e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeDepth
all individuals: 257
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4450
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 869
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1173
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3702
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4281
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31019
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3486
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10146
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3346
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3309
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2116
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505706628120577e-5
allele num: 66414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

DP
type: SiteQuality
SIO_000300: 2.972829e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQRankSum
type: SiteQuality
SIO_000300: -6.69e-1

FS
type: SiteQuality
SIO_000300: 1.953e0

QD
type: SiteQuality
SIO_000300: 1.243e1

VQSLOD
type: SiteQuality
SIO_000300: 8.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.828e0

GenotypeDepth
all individuals: 6629
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 594
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4452
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2847
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2118
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 757
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3344
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31018
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4281
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2112
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3308
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10007
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3486
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506250941406838e-5
allele num: 66390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.039e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

DP
type: SiteQuality
SIO_000300: 2.97099e6

QD
type: SiteQuality
SIO_000300: 1.198e1

MQ
type: SiteQuality
SIO_000300: 5.917e1

GenotypeDepth
all individuals: 94
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1623
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2110
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5821
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2117
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3306
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2026
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4281
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3344
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9910
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3486
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2110
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31017
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15670
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506704836522525e-5
allele num: 66370
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.304e1

FS
type: SiteQuality
SIO_000300: 8.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

DP
type: SiteQuality
SIO_000300: 2.96941e6

GenotypeDepth
all individuals: 6629
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4607
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6140
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5917
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2116
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 892
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2026
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3486
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3307
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9843
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3344
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2108
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4274
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31017
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15638
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.0e-1

QD
type: SiteQuality
SIO_000300: 1.368e1

MQ
type: SiteQuality
SIO_000300: 5.982e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 6.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.85e-1

DP
type: SiteQuality
SIO_000300: 2.969011e6

GenotypeDepth
all individuals: 2847
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1173
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 431
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1623
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5917
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4274
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3307
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3486
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2026
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9843
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2108
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31017
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3344
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66362
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.39467962655071e-5
allele num: 15638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.969011e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.54e0

FS
type: SiteQuality
SIO_000300: 6.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.0e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

MQRankSum
type: SiteQuality
SIO_000300: -4.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.02e-1

QD
type: SiteQuality
SIO_000300: 1.368e1

VQSLOD
type: SiteQuality
SIO_000300: 9.85e-1

GenotypeDepth
all individuals: 4263
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2110
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 594
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5822
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4607
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4277
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9715
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3486
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3343
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2105
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3307
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31017
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507295309296997e-5
allele num: 66344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15592
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.243e1

MQ
type: SiteQuality
SIO_000300: 5.916e1

FS
type: SiteQuality
SIO_000300: 4.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.681e0

VQSLOD
type: SiteQuality
SIO_000300: -1.57e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.48e-1

DP
type: SiteQuality
SIO_000300: 2.967513e6

GenotypeDepth
all individuals: 2113
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 5822
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2847
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5894
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6137
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3343
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8506
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3486
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1838
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31016
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3296
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4231
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2105
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512355948095944e-5
allele num: 66122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14998
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

DP
type: SiteQuality
SIO_000300: 2.952406e6

QD
type: SiteQuality
SIO_000300: 1.378e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.805e0

GenotypeDepth
all individuals: 4215
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2847
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5893
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2110
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1173
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2946
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3702
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8309
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3298
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3486
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1993
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4236
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31015
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3344
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2106
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512996641147457e-5
allele num: 66094
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.8e-2

MQ
type: SiteQuality
SIO_000300: 5.95e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

FS
type: SiteQuality
SIO_000300: 7.351e0

VQSLOD
type: SiteQuality
SIO_000300: 8.01e-1

QD
type: SiteQuality
SIO_000300: 5.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.429999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

DP
type: SiteQuality
SIO_000300: 2.949523e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.21e-1

GenotypeDepth
all individuals: 869
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5823
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2111
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2616
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4093
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7403
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3284
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2086
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3340
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31014
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3484
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.632055480639569e-5
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14364
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-1

QD
type: SiteQuality
SIO_000300: 1.483e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 1.261e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

DP
type: SiteQuality
SIO_000300: 2.937126e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.59e-1

GenotypeDepth
all individuals: 2110
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2847
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3702
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2828
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31013
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4078
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3281
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7036
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3340
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3483
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2026
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518695137138171e-5
allele num: 65846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.986e0

MQRankSum
type: SiteQuality
SIO_000300: -2.79e-1

QD
type: SiteQuality
SIO_000300: 1.412e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.932263e6

GenotypeDepth
all individuals: 2109
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 870
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1717
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31013
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3483
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2026
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2082
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4063
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6733
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3338
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3280
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52031135976648e-5
allele num: 65776
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.884e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.63e-1

DP
type: SiteQuality
SIO_000300: 2.928279e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.287e1

VQSLOD
type: SiteQuality
SIO_000300: 3.78e0

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.99e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

GenotypeDepth
all individuals: 1623
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1173
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4608
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3339
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3281
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3000
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2082
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2026
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31012
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4061
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6781
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3483
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520218911523259e-5
allele num: 65780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 3.834e0

QD
type: SiteQuality
SIO_000300: 1.14e0

MQRankSum
type: SiteQuality
SIO_000300: 9.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.85e0

DP
type: SiteQuality
SIO_000300: 2.9278e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.707e0

VQSLOD
type: SiteQuality
SIO_000300: -4.818e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e0

GenotypeDepth
all individuals: 870
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2110
bin: 7.25e1
variant carriers: 2

GenotypeDepth
all individuals: 1173
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4051
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3336
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31008
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6504
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2075
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3482
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3157
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2024
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3273
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.348618459729571e-5
allele num: 13608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.646922631680494e-5
allele num: 10366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65686
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.06e0

DP
type: SiteQuality
SIO_000300: 2.922484e6

MQRankSum
type: SiteQuality
SIO_000300: -9.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 9.853999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e0

QD
type: SiteQuality
SIO_000300: 1.455e1

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: -1.396e0

GenotypeDepth
all individuals: 3706
bin: 6.25e1
variant carriers: 68

GenotypeDepth
all individuals: 4626
bin: 5.75e1
variant carriers: 67

GenotypeDepth
all individuals: 2122
bin: 7.25e1
variant carriers: 89

GenotypeQuality
all individuals: 48
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2055
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6320
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3257
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3189
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 102
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 95
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3460
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4005
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2008
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 31296
bin: 9.75e1
variant carriers: 2051

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3312
bin: 8.25e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 94
allele frequency: 8.137119113573408e-3
allele num: 11552
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 2167
allele frequency: 2.090891547664994e-1
allele num: 10364
num of homozygotes: 239

South Asian
type: Population
allele count: 1
allele frequency: 7.388798581350672e-5
allele num: 13534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 32
allele frequency: 4.875076173065204e-4
allele num: 65640
num of homozygotes: 0

Other
type: Population
allele count: 11
allele frequency: 1.25858123569794e-2
allele num: 874
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.979e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.864e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.998e0

DP
type: SiteQuality
SIO_000300: 2.926119e6

VQSLOD
type: SiteQuality
SIO_000300: 7.68e0

QD
type: SiteQuality
SIO_000300: 1.669e1

GenotypeDepth
all individuals: 6642
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1195
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1333
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3189
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3460
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3257
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2008
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3312
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4005
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6320
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31296
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2055
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523461304082876e-5
allele num: 65640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.979e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.68e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.998e0

QD
type: SiteQuality
SIO_000300: 1.669e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.864e-1

DP
type: SiteQuality
SIO_000300: 2.926119e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

GenotypeDepth
all individuals: 2103
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1113
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 516
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4110
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2093
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3155
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6166
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2110
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3353
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3427
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30412
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3573
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528350909368791e-5
allele num: 65430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.970000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.276e0

VQSLOD
type: SiteQuality
SIO_000300: -3.022e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 2.834239e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.574e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

GenotypeDepth
all individuals: 5995
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 780
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1209
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4005
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30406
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5805
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3077
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3573
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3414
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3333
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2079
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2087
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65206
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158211721102618e-4
allele num: 8634
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.92e-1

DP
type: SiteQuality
SIO_000300: 2.824609e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.88e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.138e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

QD
type: SiteQuality
SIO_000300: 1.478e1

GenotypeDepth
all individuals: 3782
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2885
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5816
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5818
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3414
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3146
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4007
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30406
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3335
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2087
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2077
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3573
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53261402648357e-5
allele num: 65248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.075e0

MQRankSum
type: SiteQuality
SIO_000300: 7.99e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.118e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

VQSLOD
type: SiteQuality
SIO_000300: 9.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

DP
type: SiteQuality
SIO_000300: 2.824179e6

QD
type: SiteQuality
SIO_000300: 9.529999999999999e0

GenotypeDepth
all individuals: 7082
bin: 4.25e1
variant carriers: 3

GenotypeDepth
all individuals: 359
bin: 9.25e1
variant carriers: 5

GenotypeDepth
all individuals: 616
bin: 8.75e1
variant carriers: 10

GenotypeQuality
all individuals: 758
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1414
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 456
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3473
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 5638
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 902
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 3911
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 610
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 695
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 454
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3088
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 26816
bin: 9.75e1
variant carriers: 142

GenotypeQuality
all individuals: 2051
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 330
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 468
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2047
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 3246
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3332
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 476
bin: 5.75e1
variant carriers: 5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.698677800974252e-5
allele num: 11496
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.171646162858817e-3
allele num: 10242
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.191349934469201e-5
allele num: 12208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 170
allele frequency: 2.746010208696776e-3
allele num: 61908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.706535141800247e-4
allele num: 6488
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.210653753026634e-3
allele num: 826
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.476e0

DP
type: SiteQuality
SIO_000300: 2.762244e6

MQ
type: SiteQuality
SIO_000300: 5.979e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.413e0

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e0

QD
type: SiteQuality
SIO_000300: 1.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.587e0

GenotypeDepth
all individuals: 7157
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 358
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 808
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 4047
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5720
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29219
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 96
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3755
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2961
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3413
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2200
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3537
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2128
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.618368792142615e-5
allele num: 64958
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 6.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

DP
type: SiteQuality
SIO_000300: 2.741477e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.002e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.727e0

VQSLOD
type: SiteQuality
SIO_000300: -3.623e0

GenotypeDepth
all individuals: 575
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 358
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2244
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2205
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6044
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 534
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29317
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3163
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3542
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2135
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3429
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4094
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3770
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.154035508784885e-5
allele num: 64998
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.44e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
type: SiteQuality
SIO_000300: 9.95e-1

QD
type: SiteQuality
SIO_000300: 1.429e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

FS
type: SiteQuality
SIO_000300: 9.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

DP
type: SiteQuality
SIO_000300: 2.74065e6

GenotypeDepth
all individuals: 965
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6324
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 358
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3768
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29306
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 535
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5893
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3421
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3538
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2198
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3071
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4064
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2127
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540927021696253e-5
allele num: 64896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.59e-1

QD
type: SiteQuality
SIO_000300: 1.171e1

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.31e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

DP
type: SiteQuality
SIO_000300: 2.736791e6

GenotypeDepth
all individuals: 2475
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 810
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6324
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5893
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3421
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3071
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29306
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4064
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2127
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2198
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3538
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3768
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540927021696253e-5
allele num: 64896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

DP
type: SiteQuality
SIO_000300: 2.736791e6

QD
type: SiteQuality
SIO_000300: 1.171e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.31e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.1e-2

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.35e-1

GenotypeDepth
all individuals: 575
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4896
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5851
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4047
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3541
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5927
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2196
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3767
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3415
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3112
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29299
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.157630305458805e-4
allele num: 64886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11902
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

DP
type: SiteQuality
SIO_000300: 2.735667e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.099e0

MQ
type: SiteQuality
SIO_000300: 5.991e1

VQSLOD
type: SiteQuality
SIO_000300: 5.45e0

QD
type: SiteQuality
SIO_000300: 1.174e1

GenotypeDepth
all individuals: 7069
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3753
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5050
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3522
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29266
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3854
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2187
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3370
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2737
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546981838433217e-5
allele num: 64642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.716964e6

MQ
type: SiteQuality
SIO_000300: 5.367e1

VQSLOD
type: SiteQuality
SIO_000300: 3.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.55e-1

QD
type: SiteQuality
SIO_000300: 5.11e0

GenotypeDepth
all individuals: 6180
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3756
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2040
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3339
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4453
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2424
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3513
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3564
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29258
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 744
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2187
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163602513381429e-4
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.143e0

VQSLOD
type: SiteQuality
SIO_000300: -1.439e0

MQRankSum
type: SiteQuality
SIO_000300: -1.298e0

DP
type: SiteQuality
SIO_000300: 2.710969e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 3.282e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.26e0

QD
type: SiteQuality
SIO_000300: 1.654e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.91e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

GenotypeDepth
all individuals: 6161
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3334
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29246
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 654
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2424
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3555
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4252
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3511
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2184
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16333178222429e-4
allele num: 8596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.046e0

VQSLOD
type: SiteQuality
SIO_000300: 2.2e0

DP
type: SiteQuality
SIO_000300: 2.708448e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

QD
type: SiteQuality
SIO_000300: 9.06e0

GenotypeDepth
all individuals: 965
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3511
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2424
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4252
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29246
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1098
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3334
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2184
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3555
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549858962834382e-5
allele num: 64522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.046e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

VQSLOD
type: SiteQuality
SIO_000300: 2.2e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

QD
type: SiteQuality
SIO_000300: 9.06e0

MQRankSum
type: SiteQuality
SIO_000300: -9.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.708448e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.637e3

QD
type: SiteQuality
SIO_000300: 1.425e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.333333333333333e-2
allele num: 30
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

DP
type: SiteQuality
SIO_000300: 6.0e3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.166e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.49e-2

FS
type: SiteQuality
SIO_000300: 2.881e0

QD
type: SiteQuality
SIO_000300: 1.25e1

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

DP
type: SiteQuality
SIO_000300: 1.67095e5

MQRankSum
type: SiteQuality
SIO_000300: -1.368e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.22e-2

QD
type: SiteQuality
SIO_000300: 4.38e0

MQ
type: SiteQuality
SIO_000300: 5.516e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.21e-1

GenotypeQuality
all individuals: 149
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

VQSLOD
type: SiteQuality
SIO_000300: -2.517e0

DP
type: SiteQuality
SIO_000300: 1.85369e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 219
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.215e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.19e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.495e0

DP
type: SiteQuality
SIO_000300: 1.97344e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

VQSLOD
type: SiteQuality
SIO_000300: -2.504e0

GenotypeQuality
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 7.507507507507507e-4
allele num: 5328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.133e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.77e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.604e0

QD
type: SiteQuality
SIO_000300: 1.332e1

FS
type: SiteQuality
SIO_000300: 2.656e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.96643e5

GenotypeQuality
all individuals: 14
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2100
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1966
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.178e0

DP
type: SiteQuality
SIO_000300: 1.99605e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.63e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

QD
type: SiteQuality
SIO_000300: 8.859999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.006036217303823e-3
allele num: 1988
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.52e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.599999999999999e-2

DP
type: SiteQuality
SIO_000300: 2.01887e5

FS
type: SiteQuality
SIO_000300: 2.274e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 1.129e1

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.791472590469366e-4
allele num: 5582
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.83e-1

FS
type: SiteQuality
SIO_000300: 1.3829e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.63e-2

QD
type: SiteQuality
SIO_000300: 8.25e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

VQSLOD
type: SiteQuality
SIO_000300: 3.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 2.01305e5

GenotypeQuality
all individuals: 20
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.783166904422254e-4
allele num: 5608
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.67e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

QD
type: SiteQuality
SIO_000300: 7.82e0

VQSLOD
type: SiteQuality
SIO_000300: -1.629e-1

FS
type: SiteQuality
SIO_000300: 1.377e0

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

DP
type: SiteQuality
SIO_000300: 2.01954e5

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2018
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.591e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.66e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.64e-1

DP
type: SiteQuality
SIO_000300: 2.02125e5

VQSLOD
type: SiteQuality
SIO_000300: 6.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2010
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.740000000000001e-2

DP
type: SiteQuality
SIO_000300: 2.02458e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
SIO_000300: 7.35e0

VQSLOD
type: SiteQuality
SIO_000300: 2.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 107
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2042
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.048e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.06e-1

DP
type: SiteQuality
SIO_000300: 1.94316e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.88e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 5.89e0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 6.329113924050633e-3
allele num: 158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5742
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.827e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.26e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.799e0

QD
type: SiteQuality
SIO_000300: 9.789999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.101e0

DP
type: SiteQuality
SIO_000300: 1.71273e5

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2772
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.754385964912281e-4
allele num: 5700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1942
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.16e0

FS
type: SiteQuality
SIO_000300: 2.199e0

DP
type: SiteQuality
SIO_000300: 1.66251e5

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.27e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.649e0

MQ
type: SiteQuality
SIO_000300: 5.884e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e-1

GenotypeQuality
all individuals: 24
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5712
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.17e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.909e0

QD
type: SiteQuality
SIO_000300: 1.442e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.65112e5

GenotypeQuality
all individuals: 24759
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.771793054571226e-4
allele num: 5644
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.58761e5

VQSLOD
type: SiteQuality
SIO_000300: -1.725e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.62e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.64e-1

QD
type: SiteQuality
SIO_000300: 1.287e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

GenotypeQuality
all individuals: 197
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.809627216793341e-4
allele num: 5526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.49805e5

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.359e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.35e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.729e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e0

QD
type: SiteQuality
SIO_000300: 3.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.301e0

GenotypeQuality
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.79e-2

QD
type: SiteQuality
SIO_000300: 9.109999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.16737e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.952e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 3.692307692307692e-3
allele num: 3250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 952
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

QD
type: SiteQuality
SIO_000300: 1.718e1

FS
type: SiteQuality
SIO_000300: 8.363e0

VQSLOD
type: SiteQuality
SIO_000300: -4.295e-1

DP
type: SiteQuality
SIO_000300: 9.6428e4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.44e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.82e-1

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 456
bin: 3.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

South Asian
type: Population
allele count: 44
allele frequency: 1.353846153846154e-2
allele num: 3250
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.44e-2

FS
type: SiteQuality
SIO_000300: 8.363e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.718e1

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.295e-1

DP
type: SiteQuality
SIO_000300: 9.6428e4

GenotypeQuality
all individuals: 782
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 1.588310038119441e-3
allele num: 3148
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.777777777777778e-2
allele num: 36
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.06e-1

QD
type: SiteQuality
SIO_000300: 1.21e1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

FS
type: SiteQuality
SIO_000300: 9.389999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

DP
type: SiteQuality
SIO_000300: 9.6522e4

GenotypeQuality
all individuals: 1030
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2188
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.897605222209572e-5
allele num: 52698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.408e0

MQ
type: SiteQuality
SIO_000300: 5.845e1

VQSLOD
type: SiteQuality
SIO_000300: -3.354e0

DP
type: SiteQuality
SIO_000300: 9.28158e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.164e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.143e0

GenotypeQuality
all individuals: 7921
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1220
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2515
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 664
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2696
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 23
allele frequency: 1.560168226834894e-3
allele num: 14742
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52832
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

DP
type: SiteQuality
SIO_000300: 9.42519e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.45e-1

QD
type: SiteQuality
SIO_000300: 1.408e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.44e0

GenotypeQuality
all individuals: 3932
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2883
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4630
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.882246649600964e-5
allele num: 53128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14768
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5340
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.573e0

VQSLOD
type: SiteQuality
SIO_000300: -1.379e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.285e1

DP
type: SiteQuality
SIO_000300: 9.67241e5

MQ
type: SiteQuality
SIO_000300: 5.75e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.58e-1

GenotypeQuality
all individuals: 809
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7286
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1229
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2632
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8744
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.347708894878706e-3
allele num: 742
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5334
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.00239e6

QD
type: SiteQuality
SIO_000300: 1.113e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1229
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53374
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.495215311004785e-4
allele num: 6688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5334
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8744
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.67e-1

DP
type: SiteQuality
SIO_000300: 1.00239e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

QD
type: SiteQuality
SIO_000300: 1.113e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3830
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1279
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25387
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1732
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4812
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.776514478593e-5
allele num: 56290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15206
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.85e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.169764e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.222e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.275e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.109e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.15e-1