http://identifiers.org/exac.variant/14-24679682-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679682
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679682
    reference: chr 14
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.512T>G
  hgvsp: ENSP00000432575.1:p.Leu171Arg
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.482T>G
  hgvsp: ENSP00000433967.1:p.Leu161Arg
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.517T>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.611T>G
  hgvsp: ENSP00000324205.9:p.Leu204Arg
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.482T>G
  hgvsp: ENSP00000476412.1:p.Leu161Arg
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1690T>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.167T>G
  hgvsp: ENSP00000449757.2:p.Leu56Arg
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.482T>G
  hgvsp: ENSP00000451949.1:p.Leu161Arg
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*114T>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.216T>G
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4617
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4538
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10089
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5122
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu204Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

14-24679685-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679685
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679685
    reference: chr 14
allele count: 16
allele frequency: 1.319631163089917e-4
allele num: 121246
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.479A>C
  hgvsp: ENSP00000433967.1:p.Glu160Ala
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.479A>C
  hgvsp: ENSP00000476412.1:p.Glu160Ala
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.164A>C
  hgvsp: ENSP00000449757.2:p.Glu55Ala
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.213A>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1687A>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.608A>C
  hgvsp: ENSP00000324205.9:p.Glu203Ala
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*111A>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.479A>C
  hgvsp: ENSP00000451949.1:p.Glu160Ala
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.509A>C
  hgvsp: ENSP00000432575.1:p.Glu170Ala
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.514A>C
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4534
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5367
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10102
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52002
  bin: 9.75e1
  variant carriers: 16
hgvs: p.Glu203Ala
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

14-24679692-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679692
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679692
    reference: chr 14
allele count: 1
allele frequency: 8.253549026081216e-6
allele num: 121160
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.160-3C>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.505-3C>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*107-3C>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.604-3C>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.209-3C>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.475-3C>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.475-3C>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.475-3C>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1683-3C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.510-3C>G
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10095
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5370
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
hgvs: c.475-3C>G
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

14-24679693-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679693
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679693
    reference: chr 14
allele count: 2
allele frequency: 1.650846058605035e-5
allele num: 121150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*107-4C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.604-4C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1683-4C>T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.475-4C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.510-4C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.475-4C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.209-4C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.160-4C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.505-4C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.475-4C>T
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10096
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5370
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52001
  bin: 9.75e1
  variant carriers: 2
hgvs: c.475-4C>T
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

14-24679696-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679696
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679696
    reference: chr 14
allele count: 1
allele frequency: 8.256683785524381e-6
allele num: 121114
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.160-7T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.475-7T>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.475-7T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.604-7T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1683-7T>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.475-7T>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*107-7T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.209-7T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.510-7T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.505-7T>C
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5370
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10097
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4862
  bin: 6.25e1
  variant carriers: 0
hgvs: c.475-7T>C
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

14-24679697-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679697
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679697
    reference: chr 14
allele count: 4
allele frequency: 3.302728053372085e-5
allele num: 121112
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.510-8C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1683-8C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.160-8C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.475-8C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.475-8C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*107-8C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.209-8C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.475-8C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.604-8C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.505-8C>T
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10099
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5370
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4535
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: c.475-8C>T
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

14-24679712-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679712
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679712
    reference: chr 14
allele count: 1
allele frequency: 8.271161767381846e-6
allele num: 120902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*107-23G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.510-23G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.160-23G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.604-23G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.475-23G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.505-23G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.475-23G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.209-23G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1683-23G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.475-23G>A
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5370
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10099
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3623
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

14-24679715-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679715
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679715
    reference: chr 14
allele count: 1
allele frequency: 8.271709100534353e-6
allele num: 120894
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.505-26A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*107-26A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.209-26A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.510-26A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.604-26A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.160-26A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.475-26A>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.475-26A>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1683-26A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.475-26A>G
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5370
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10099
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum

14-24679723-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679723
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679722
    reference: chr 14
allele count: 2
allele frequency: 1.656753756689143e-5
allele num: 120718
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.510-35delT
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1683-35delT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.475-35delT
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.160-35delT
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*107-35delT
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.475-35delT
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.209-35delT
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.475-35delT
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.604-35delT
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.505-35delT
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10099
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5370
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 1
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: GA
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/14-24679730-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679730
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679730
    reference: chr 14
allele count: 1
allele frequency: 8.284180528862085e-6
allele num: 120712
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.209-41T>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.160-41T>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.505-41T>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.475-41T>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1683-41T>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.475-41T>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*107-41T>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.510-41T>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.475-41T>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.604-41T>G
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5370
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10099
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

14-24679735-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679735
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679735
    reference: chr 14
allele count: 8
allele frequency: 6.632509244059759e-5
allele num: 120618
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.475-46A>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1683-46A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.475-46A>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.510-46A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.604-46A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*107-46A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.475-46A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.505-46A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.160-46A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.209-46A>G
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5134
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5369
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10104
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

14-24679736-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679736
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679736
    reference: chr 14
allele count: 1
allele frequency: 8.297102651754007e-6
allele num: 120524
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.475-47T>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.505-47T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.475-47T>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1683-47T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.160-47T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.475-47T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*107-47T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.510-47T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.209-47T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.604-47T>C
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10103
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5369
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1543
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

14-24679738-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679738
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679738
    reference: chr 14
allele count: 1
allele frequency: 8.299030673217368e-6
allele num: 120496
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.160-49G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.475-49G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.604-49G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1683-49G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.505-49G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.475-49G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.510-49G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*107-49G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.475-49G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.209-49G>A
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5369
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

14-24679822-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679822
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679823
    reference: chr 14
allele count: 1
allele frequency: 8.259684480052863e-6
allele num: 121070
alternate allele: CT
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1682+37dupA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.159+37dupA
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.474+37dupA
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.603+37dupA
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.504+37dupA
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.474+37dupA
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.474+37dupA
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.208+37dupA
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*106+37dupA
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.509+37dupA
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5182
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3917
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5091
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2911
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

14-24679825-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679825
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679825
    reference: chr 14
allele count: 1
allele frequency: 8.25695648583932e-6
allele num: 121110
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.474+35A>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.509+35A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.208+35A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*106+35A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.603+35A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1682+35A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.474+35A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.474+35A>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.504+35A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.159+35A>G
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3917
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5181
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5091
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

14-24679838-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679838
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679838
    reference: chr 14
allele count: 2
allele frequency: 1.649593375233005e-5
allele num: 121242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.509+22G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1682+22G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*106+22G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.208+22G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.474+22G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.159+22G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.474+22G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.474+22G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.504+22G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.603+22G>A
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3917
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5156
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5091
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5417
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7235
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/14-24679841-A-AC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679841
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679842
    reference: chr 14
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: AC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.474+18dupG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.504+18dupG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.509+18dupG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.474+18dupG
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.474+18dupG
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1682+18dupG
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*106+18dupG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.159+18dupG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.603+18dupG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.208+18dupG
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5091
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3917
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2266
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2547
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/14-24679849-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679849
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679849
    reference: chr 14
allele count: 1
allele frequency: 8.24279991427488e-6
allele num: 121318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.504+11G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.474+11G>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*106+11G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.159+11G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.474+11G>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.603+11G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1682+11G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.208+11G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.474+11G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.509+11G>T
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5091
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3922
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7473
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

14-24679855-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679855
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679855
    reference: chr 14
allele count: 9
allele frequency: 7.416808135414435e-5
allele num: 121346
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.504+5T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.474+5T>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.603+5T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.474+5T>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*106+5T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.208+5T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.159+5T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.474+5T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.509+5T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1682+5T>C
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5206
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5092
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39301
  bin: 9.75e1
  variant carriers: 9
hgvs: c.474+5T>C
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

14-24679877-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679877
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679877
    reference: chr 14
allele count: 55726
allele frequency: 4.591490343418364e-1
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.457G>A
  hgvsp: ENSP00000451949.1:p.Gly153Arg
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.457G>A
  hgvsp: ENSP00000476412.1:p.Gly153Arg
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.191G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.586G>A
  hgvsp: ENSP00000324205.9:p.Gly196Arg
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.142G>A
  hgvsp: ENSP00000449757.2:p.Gly48Arg
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1665G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*89G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.457G>A
  hgvsp: ENSP00000433967.1:p.Gly153Arg
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.710G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.492G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.487G>A
  hgvsp: ENSP00000432575.1:p.Gly163Arg
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 4.25e1
  variant carriers: 310
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 3.25e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 5.75e1
  variant carriers: 883
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4053
  bin: 2.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 7.75e1
  variant carriers: 1881
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 2.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26925
  bin: 9.75e1
  variant carriers: 26032
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 6.25e1
  variant carriers: 1128
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 7.25e1
  variant carriers: 1645
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 3.75e1
  variant carriers: 189
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 6.75e1
  variant carriers: 1344
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 5.25e1
  variant carriers: 707
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 8.75e1
  variant carriers: 2398
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 8.25e1
  variant carriers: 2133
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 9.25e1
  variant carriers: 2513
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 4.75e1
  variant carriers: 500
genotype quality: GenotypeQuality
hgvs: p.Gly153Arg
num of homozygotes: 13875
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

14-24679881-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679881
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679882
    reference: chr 14
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.482dupG
  hgvsp: ENSP00000432575.1:p.Phe162LeufsTer4
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.452dupG
  hgvsp: ENSP00000476412.1:p.Phe152LeufsTer4
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.705dupG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.581dupG
  hgvsp: ENSP00000324205.9:p.Phe195LeufsTer4
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1660dupG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.452dupG
  hgvsp: ENSP00000433967.1:p.Phe152LeufsTer4
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.186dupG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.452dupG
  hgvsp: ENSP00000451949.1:p.Phe152LeufsTer4
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.487dupG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*84dupG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*184dupG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.137dupG
  hgvsp: ENSP00000449757.2:p.Phe47LeufsTer4
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6016
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12837
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe152LeufsTer4
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/14-24679882-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679882
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679882
    reference: chr 14
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1660G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.705G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.482G>T
  hgvsp: ENSP00000432575.1:p.Gly161Val
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.452G>T
  hgvsp: ENSP00000433967.1:p.Gly151Val
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*184G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.186G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.581G>T
  hgvsp: ENSP00000324205.9:p.Gly194Val
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.452G>T
  hgvsp: ENSP00000476412.1:p.Gly151Val
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*84G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.487G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.137G>T
  hgvsp: ENSP00000449757.2:p.Gly46Val
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.452G>T
  hgvsp: ENSP00000451949.1:p.Gly151Val
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly151Val
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

14-24679886-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679886
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679886
    reference: chr 14
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.701A>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.448A>T
  hgvsp: ENSP00000476412.1:p.Met150Leu
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.448A>T
  hgvsp: ENSP00000451949.1:p.Met150Leu
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.448A>T
  hgvsp: ENSP00000433967.1:p.Met150Leu
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.478A>T
  hgvsp: ENSP00000432575.1:p.Met160Leu
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.182A>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.483A>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*180A>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.577A>T
  hgvsp: ENSP00000324205.9:p.Met193Leu
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.133A>T
  hgvsp: ENSP00000449757.2:p.Met45Leu
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*80A>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1656A>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12888
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met150Leu
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD

14-24679886-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679886
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679886
    reference: chr 14
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*80A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.182A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1656A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.448A>G
  hgvsp: ENSP00000476412.1:p.Met150Val
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.448A>G
  hgvsp: ENSP00000433967.1:p.Met150Val
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.483A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.478A>G
  hgvsp: ENSP00000432575.1:p.Met160Val
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*180A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.448A>G
  hgvsp: ENSP00000451949.1:p.Met150Val
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.133A>G
  hgvsp: ENSP00000449757.2:p.Met45Val
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.577A>G
  hgvsp: ENSP00000324205.9:p.Met193Val
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.701A>G
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4073
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met150Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

14-24679891-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679891
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679891
    reference: chr 14
allele count: 8
allele frequency: 6.589243060703402e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.443G>A
  hgvsp: ENSP00000476412.1:p.Arg148Gln
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.128G>A
  hgvsp: ENSP00000449757.2:p.Arg43Gln
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.443G>A
  hgvsp: ENSP00000433967.1:p.Arg148Gln
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.473G>A
  hgvsp: ENSP00000432575.1:p.Arg158Gln
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.572G>A
  hgvsp: ENSP00000324205.9:p.Arg191Gln
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.177G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.443G>A
  hgvsp: ENSP00000451949.1:p.Arg148Gln
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.478G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*175G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1651G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.696G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*75G>A
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4073
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
hgvs: p.Arg148Gln
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

14-24679892-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679892
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679892
    reference: chr 14
allele count: 4
allele frequency: 3.294621530351701e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.127C>T
  hgvsp: ENSP00000449757.2:p.Arg43Trp
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.442C>T
  hgvsp: ENSP00000433967.1:p.Arg148Trp
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.571C>T
  hgvsp: ENSP00000324205.9:p.Arg191Trp
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*174C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.472C>T
  hgvsp: ENSP00000432575.1:p.Arg158Trp
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.442C>T
  hgvsp: ENSP00000451949.1:p.Arg148Trp
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*74C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.176C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.477C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1650C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.442C>T
  hgvsp: ENSP00000476412.1:p.Arg148Trp
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.695C>T
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4074
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg148Trp
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

14-24679902-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679902
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679902
    reference: chr 14
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.561T>C
  hgvsp: ENST00000347519.6:c.561T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.685T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*64T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.432T>C
  hgvsp: ENST00000530611.1:c.432T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.432T>C
  hgvsp: ENST00000556387.1:c.432T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*164T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.432T>C
  hgvsp: ENST00000609024.1:c.432T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.117T>C
  hgvsp: ENST00000530996.1:c.117T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1640T>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.462T>C
  hgvsp: ENST00000533011.1:c.462T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.166T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.467T>C
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4074
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12846
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp144Asp
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD

14-24679903-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679903
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679903
    reference: chr 14
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.431A>T
  hgvsp: ENSP00000451949.1:p.Asp144Val
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.466A>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1639A>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*63A>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.684A>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.431A>T
  hgvsp: ENSP00000476412.1:p.Asp144Val
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.461A>T
  hgvsp: ENSP00000432575.1:p.Asp154Val
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*163A>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.116A>T
  hgvsp: ENSP00000449757.2:p.Asp39Val
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.560A>T
  hgvsp: ENSP00000324205.9:p.Asp187Val
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.431A>T
  hgvsp: ENSP00000433967.1:p.Asp144Val
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.165A>T
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4074
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12846
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp144Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

14-24679903-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679903
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679903
    reference: chr 14
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.466A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.431A>G
  hgvsp: ENSP00000451949.1:p.Asp144Gly
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.560A>G
  hgvsp: ENSP00000324205.9:p.Asp187Gly
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*163A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.431A>G
  hgvsp: ENSP00000476412.1:p.Asp144Gly
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.461A>G
  hgvsp: ENSP00000432575.1:p.Asp154Gly
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.431A>G
  hgvsp: ENSP00000433967.1:p.Asp144Gly
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1639A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.165A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.684A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.116A>G
  hgvsp: ENSP00000449757.2:p.Asp39Gly
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*63A>G
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12846
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4074
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp144Gly
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

14-24679908-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679908
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679908
    reference: chr 14
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.426C>G
  hgvsp: ENSP00000451949.1:p.Ile142Met
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.461C>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*158C>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.426C>G
  hgvsp: ENSP00000433967.1:p.Ile142Met
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.426C>G
  hgvsp: ENSP00000476412.1:p.Ile142Met
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*58C>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.679C>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1634C>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.555C>G
  hgvsp: ENSP00000324205.9:p.Ile185Met
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.111C>G
  hgvsp: ENSP00000449757.2:p.Ile37Met
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.160C>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.456C>G
  hgvsp: ENSP00000432575.1:p.Ile152Met
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6015
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4076
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ile142Met
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/14-24679911-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679911
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679911
    reference: chr 14
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.453G>T
  hgvsp: ENSP00000432575.1:p.Gln151His
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.108G>T
  hgvsp: ENSP00000449757.2:p.Gln36His
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.157G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.423G>T
  hgvsp: ENSP00000433967.1:p.Gln141His
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.423G>T
  hgvsp: ENSP00000476412.1:p.Gln141His
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.423G>T
  hgvsp: ENSP00000451949.1:p.Gln141His
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1631G>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.552G>T
  hgvsp: ENSP00000324205.9:p.Gln184His
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*55G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*155G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.676G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.458G>T
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6015
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln141His
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

14-24679920-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679920
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679920
    reference: chr 14
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.414G>A
  hgvsp: ENST00000609024.1:c.414G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.414G>A
  hgvsp: ENST00000556387.1:c.414G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*46G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.667G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1622G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*146G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.543G>A
  hgvsp: ENST00000347519.6:c.543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.414G>A
  hgvsp: ENST00000530611.1:c.414G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.449G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.99G>A
  hgvsp: ENST00000530996.1:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.444G>A
  hgvsp: ENST00000533011.1:c.444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.148G>A
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4076
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val138Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

14-24679926-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679926
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679926
    reference: chr 14
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.438G>C
  hgvsp: ENSP00000432575.1:p.Gln146His
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.537G>C
  hgvsp: ENSP00000324205.9:p.Gln179His
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*40G>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.93G>C
  hgvsp: ENSP00000449757.2:p.Gln31His
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1616G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.408G>C
  hgvsp: ENSP00000476412.1:p.Gln136His
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.408G>C
  hgvsp: ENSP00000451949.1:p.Gln136His
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*140G>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.142G>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.408G>C
  hgvsp: ENSP00000433967.1:p.Gln136His
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.661G>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.443G>C
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4076
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gln136His
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP

14-24679928-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679928
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679928
    reference: chr 14
allele count: 137
allele frequency: 1.128389286067275e-3
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.406C>T
  hgvsp: ENSP00000433967.1:p.Gln136Ter
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.406C>T
  hgvsp: ENSP00000476412.1:p.Gln136Ter
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.436C>T
  hgvsp: ENSP00000432575.1:p.Gln146Ter
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*38C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.91C>T
  hgvsp: ENSP00000449757.2:p.Gln31Ter
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1614C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.140C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.659C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.535C>T
  hgvsp: ENSP00000324205.9:p.Gln179Ter
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.406C>T
  hgvsp: ENSP00000451949.1:p.Gln136Ter
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.441C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*138C>T
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6010
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 9.75e1
  variant carriers: 108
genotype quality: GenotypeQuality
hgvs: p.Gln136Ter
num of homozygotes: 2
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

14-24679933-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679933
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679933
    reference: chr 14
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1609A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.135A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.86A>G
  hgvsp: ENSP00000449757.2:p.Glu29Gly
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.401A>G
  hgvsp: ENSP00000476412.1:p.Glu134Gly
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.431A>G
  hgvsp: ENSP00000432575.1:p.Glu144Gly
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.530A>G
  hgvsp: ENSP00000324205.9:p.Glu177Gly
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.401A>G
  hgvsp: ENSP00000433967.1:p.Glu134Gly
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.436A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.401A>G
  hgvsp: ENSP00000451949.1:p.Glu134Gly
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.654A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*33A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*133A>G
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12875
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu134Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

14-24679935-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679935
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679935
    reference: chr 14
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.399G>C
  hgvsp: ENST00000609024.1:c.399G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.399G>C
  hgvsp: ENST00000556387.1:c.399G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.399G>C
  hgvsp: ENST00000530611.1:c.399G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.84G>C
  hgvsp: ENST00000530996.1:c.84G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.528G>C
  hgvsp: ENST00000347519.6:c.528G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1607G>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*131G>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.652G>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.434G>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*31G>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.429G>C
  hgvsp: ENST00000533011.1:c.429G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.133G>C
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr133Thr
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

14-24679936-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679936
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679936
    reference: chr 14
allele count: 5
allele frequency: 4.118276912939626e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.83C>T
  hgvsp: ENSP00000449757.2:p.Thr28Met
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.433C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*130C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*30C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.132C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.398C>T
  hgvsp: ENSP00000433967.1:p.Thr133Met
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.527C>T
  hgvsp: ENSP00000324205.9:p.Thr176Met
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1606C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.428C>T
  hgvsp: ENSP00000432575.1:p.Thr143Met
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.398C>T
  hgvsp: ENSP00000476412.1:p.Thr133Met
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.398C>T
  hgvsp: ENSP00000451949.1:p.Thr133Met
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.651C>T
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4072
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr133Met
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

14-24679939-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679939
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679939
    reference: chr 14
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.430T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.80T>C
  hgvsp: ENSP00000449757.2:p.Ile27Thr
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.395T>C
  hgvsp: ENSP00000476412.1:p.Ile132Thr
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*27T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.395T>C
  hgvsp: ENSP00000433967.1:p.Ile132Thr
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.524T>C
  hgvsp: ENSP00000324205.9:p.Ile175Thr
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1603T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.648T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.395T>C
  hgvsp: ENSP00000451949.1:p.Ile132Thr
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.425T>C
  hgvsp: ENSP00000432575.1:p.Ile142Thr
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.129T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*127T>C
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6018
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile132Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

14-24679947-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679947
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679947
    reference: chr 14
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.387G>A
  hgvsp: ENSP00000476412.1:p.Met129Ile
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.72G>A
  hgvsp: ENSP00000449757.2:p.Met24Ile
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.422G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.516G>A
  hgvsp: ENSP00000324205.9:p.Met172Ile
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.387G>A
  hgvsp: ENSP00000433967.1:p.Met129Ile
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.417G>A
  hgvsp: ENSP00000432575.1:p.Met139Ile
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.387G>A
  hgvsp: ENSP00000451949.1:p.Met129Ile
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*19G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1595G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*119G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.121G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.640G>A
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8689
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6018
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met129Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/14-24679948-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679948
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679948
    reference: chr 14
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.639T>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.386T>G
  hgvsp: ENSP00000433967.1:p.Met129Arg
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.515T>G
  hgvsp: ENSP00000324205.9:p.Met172Arg
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.386T>G
  hgvsp: ENSP00000476412.1:p.Met129Arg
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*118T>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.71T>G
  hgvsp: ENSP00000449757.2:p.Met24Arg
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.386T>G
  hgvsp: ENSP00000451949.1:p.Met129Arg
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*18T>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.416T>G
  hgvsp: ENSP00000432575.1:p.Met139Arg
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1594T>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.421T>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.120T>G
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6018
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12872
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met129Arg
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

14-24679948-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679948
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679948
    reference: chr 14
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1594T>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*118T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.386T>C
  hgvsp: ENSP00000451949.1:p.Met129Thr
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.120T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.515T>C
  hgvsp: ENSP00000324205.9:p.Met172Thr
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.386T>C
  hgvsp: ENSP00000433967.1:p.Met129Thr
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.421T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.639T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.*18T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.386T>C
  hgvsp: ENSP00000476412.1:p.Met129Thr
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.71T>C
  hgvsp: ENSP00000449757.2:p.Met24Thr
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.416T>C
  hgvsp: ENSP00000432575.1:p.Met139Thr
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4073
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6018
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8688
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met129Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

14-24679967-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679967
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679967
    reference: chr 14
allele count: 4
allele frequency: 3.29549012176836e-5
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.367G>A
  hgvsp: ENSP00000476412.1:p.Asp123Asn
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.367G>A
  hgvsp: ENSP00000433967.1:p.Asp123Asn
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.367G>A
  hgvsp: ENSP00000451949.1:p.Asp123Asn
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.402G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1575G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*99G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.496G>A
  hgvsp: ENSP00000324205.9:p.Asp166Asn
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.397G>A
  hgvsp: ENSP00000432575.1:p.Asp133Asn
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.500G>A
  hgvsp: ENST00000533523.1:c.500G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.52G>A
  hgvsp: ENSP00000449757.2:p.Asp18Asn
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.620G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.101G>A
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6016
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8692
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp123Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

14-24679969-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679969
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679969
    reference: chr 14
allele count: 4
allele frequency: 3.295544423938835e-5
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.494T>C
  hgvsp: ENSP00000324205.9:p.Ile165Thr
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.400T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.498T>C
  hgvsp: ENST00000533523.1:c.498T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.99T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.365T>C
  hgvsp: ENSP00000433967.1:p.Ile122Thr
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.618T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.365T>C
  hgvsp: ENSP00000451949.1:p.Ile122Thr
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.395T>C
  hgvsp: ENSP00000432575.1:p.Ile132Thr
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.365T>C
  hgvsp: ENSP00000476412.1:p.Ile122Thr
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.50T>C
  hgvsp: ENSP00000449757.2:p.Ile17Thr
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1573T>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*97T>C
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile122Thr
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

14-24679974-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679974
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679974
    reference: chr 14
allele count: 2
allele frequency: 1.647962294622699e-5
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.390G>A
  hgvsp: ENSP00000432575.1:p.Met130Ile
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.360G>A
  hgvsp: ENSP00000476412.1:p.Met120Ile
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.493G>A
  hgvsp: ENSP00000436224.1:p.Gly165Arg
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.94G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.360G>A
  hgvsp: ENSP00000451949.1:p.Met120Ile
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.613G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1568G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.395G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.45G>A
  hgvsp: ENSP00000449757.2:p.Met15Ile
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*92G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.489G>A
  hgvsp: ENSP00000324205.9:p.Met163Ile
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.360G>A
  hgvsp: ENSP00000433967.1:p.Met120Ile
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met120Ile
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ

14-24679987-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679987
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679987
    reference: chr 14
allele count: 9
allele frequency: 7.418764528413868e-5
allele num: 121314
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.489-13A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.390-13A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.613-13A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.360-13A>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.81A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1568-13A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.360-13A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.493-13A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.360-13A>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.395-13A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.45-13A>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*92-13A>G
  variant of: http://identifiers.org/hgnc/20274
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6010
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

14-24679998-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24679998
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24679998
    reference: chr 14
allele count: 1
allele frequency: 8.248239000973292e-6
allele num: 121238
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.70C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.489-24C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.45-24C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.395-24C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.360-24C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1568-24C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.493-24C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*92-24C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.613-24C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.390-24C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.360-24C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.360-24C>T
  variant of: http://identifiers.org/hgnc/11864
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6002
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12452
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

14-24680005-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24680005
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24680005
    reference: chr 14
allele count: 57
allele frequency: 4.70498893914881e-4
allele num: 121148
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.63G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.45-31G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.360-31G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*92-31G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.489-31G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.390-31G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.360-31G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.493-31G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1568-31G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.360-31G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.613-31G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.395-31G>A
  variant of: http://identifiers.org/hgnc/20274
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11907
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8427
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12117
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5959
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 1
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ

14-24680006-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24680006
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24680006
    reference: chr 14
allele count: 4341
allele frequency: 3.583397995740536e-2
allele num: 121142
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.62C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.360-32C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.360-32C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1568-32C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.493-32C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.390-32C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.489-32C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.45-32C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.360-32C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.395-32C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*92-32C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.613-32C>T
  variant of: http://identifiers.org/hgnc/20274
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 7.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 6.25e1
  variant carriers: 297
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 6.75e1
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 1.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 11962
  bin: 2.75e1
  variant carriers: 177
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 5.25e1
  variant carriers: 524
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 4.75e1
  variant carriers: 511
genotype depth: GenotypeDepth
  all individuals: 8504
  bin: 3.75e1
  variant carriers: 396
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12081
  bin: 3.25e1
  variant carriers: 243
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 2.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 9.75e1
  variant carriers: 470
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 5.75e1
  variant carriers: 385
genotype depth: GenotypeDepth
  all individuals: 6008
  bin: 4.25e1
  variant carriers: 526
genotype quality: GenotypeQuality
num of homozygotes: 106
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

14-24680009-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24680009
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24680009
    reference: chr 14
allele count: 1
allele frequency: 8.258456659619451e-6
allele num: 121088
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.493-35T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.360-35T>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.613-35T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.45-35T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.395-35T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.360-35T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.59T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*92-35T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1568-35T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.360-35T>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.390-35T>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.489-35T>C
  variant of: http://identifiers.org/hgnc/20274
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8662
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12406
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2990
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum

http://identifiers.org/exac.variant/14-24680010-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24680010
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24680010
    reference: chr 14
allele count: 1
allele frequency: 8.260912665631299e-6
allele num: 121052
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.395-36G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.493-36G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.613-36G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1568-36G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.360-36G>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.58G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*92-36G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.360-36G>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.360-36G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.390-36G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.489-36G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.45-36G>T
  variant of: http://identifiers.org/hgnc/20274
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2990
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

14-24680014-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24680014
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24680013
    reference: chr 14
allele count: 2
allele frequency: 1.652837922713299e-5
allele num: 121004
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.489-41delG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.395-41delG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.390-41delG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.360-41delG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.53delG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*92-41delG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1568-41delG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.360-41delG
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.360-41delG
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.613-41delG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.45-41delG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.493-41delG
  variant of: http://identifiers.org/hgnc/20274
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8492
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2990
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11557
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: GC
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/14-24680023-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24680023
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24680023
    reference: chr 14
allele count: 1
allele frequency: 8.277597510098669e-6
allele num: 120808
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*92-49T>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.360-49T>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.395-49T>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.489-49T>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.360-49T>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.360-49T>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.613-49T>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.45-49T>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000524955
  gene symbol: CHMP4A
  hgvsc: ENST00000524955.1:n.45T>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1568-49T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.390-49T>G
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.493-49T>G
  variant of: http://identifiers.org/hgnc/20274
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2990
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3753
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5819
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8270
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

14-24680572-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24680572
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24680572
    reference: chr 14
allele count: 1
allele frequency: 1.496199652881681e-5
allele num: 66836
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1567+49G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000527154
  gene symbol: CHMP4A
  hgvsc: ENST00000527154.1:n.457G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.389+49G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.359+49G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.492+45G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.612+45G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.359+49G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.394+45G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.44+49G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.488+49G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*91+45G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.359+49G>A
  variant of: http://identifiers.org/hgnc/11864
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22530
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5941
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

14-24680586-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24680586
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24680586
    reference: chr 14
allele count: 38
allele frequency: 5.378779300192504e-4
allele num: 70648
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.488+35C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.359+35C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.359+35C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.612+31C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.389+35C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*91+31C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.359+35C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.394+31C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1567+35C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000527154
  gene symbol: CHMP4A
  hgvsc: ENST00000527154.1:n.443C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.44+35C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.492+31C>T
  variant of: http://identifiers.org/hgnc/20274
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4814
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19471
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21032
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7301
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

14-24680603-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24680603
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24680603
    reference: chr 14
allele count: 1
allele frequency: 1.231345121410629e-5
allele num: 81212
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.492+14G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.389+18G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000527154
  gene symbol: CHMP4A
  hgvsc: ENST00000527154.1:n.426G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1567+18G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.359+18G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.359+18G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.359+18G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.44+18G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.394+14G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.488+18G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*91+14G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.612+14G>A
  variant of: http://identifiers.org/hgnc/20274
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15987
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5383
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

14-24680606-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24680606
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24680607
    reference: chr 14
allele count: 1
allele frequency: 1.089704472147154e-5
allele num: 91768
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.389+14dupG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.44+14dupG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*91+10dupG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.359+14dupG
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.612+10dupG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.488+14dupG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.394+10dupG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.359+14dupG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.359+14dupG
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1567+14dupG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000527154
  gene symbol: CHMP4A
  hgvsc: ENST00000527154.1:n.422dupG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.492+10dupG
  variant of: http://identifiers.org/hgnc/20274
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12840
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4920
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7035
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10958
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ

14-24680606-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24680606
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24680605
    reference: chr 14
allele count: 14301
allele frequency: 1.558386365617644e-1
allele num: 91768
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.359+14delG
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*91+10delG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.394+10delG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000527154
  gene symbol: CHMP4A
  hgvsc: ENST00000527154.1:n.422delG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.44+14delG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1567+14delG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.389+14delG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.612+10delG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.492+10delG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.359+14delG
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.488+14delG
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.359+14delG
  variant of: http://identifiers.org/hgnc/20274
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.25e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 4920
  bin: 2.75e1
  variant carriers: 1659
genotype depth: GenotypeDepth
  all individuals: 7035
  bin: 1.75e1
  variant carriers: 3903
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 10958
  bin: 1.25e1
  variant carriers: 2513
genotype depth: GenotypeDepth
  all individuals: 12840
  bin: 7.5e0
  variant carriers: 520
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 3.25e1
  variant carriers: 718
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 3.75e1
  variant carriers: 296
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 18310
  bin: 2.25e1
  variant carriers: 3022
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
num of homozygotes: 934
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: TC
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

14-24680609-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24680609
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24680609
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 96578
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.488+12G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.394+8G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*91+8G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1567+12G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.492+8G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.44+12G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.359+12G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.612+8G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.389+12G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000527154
  gene symbol: CHMP4A
  hgvsc: ENST00000527154.1:n.420G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.359+12G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.359+12G>A
  variant of: http://identifiers.org/hgnc/20274
canonical: false
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9866
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6141
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6605
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.612+8G>A
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum

14-24680611-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24680611
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24680611
    reference: chr 14
allele count: 1
allele frequency: 1.021220971793877e-5
allele num: 97922
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*91+6G>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.394+6G>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1567+10G>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.488+10G>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.359+10G>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.612+6G>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.359+10G>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.389+10G>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.44+10G>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.359+10G>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000527154
  gene symbol: CHMP4A
  hgvsc: ENST00000527154.1:n.418G>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.492+6G>C
  variant of: http://identifiers.org/hgnc/20274
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.612+6G>C
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/14-24680612-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24680612
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24680612
    reference: chr 14
allele count: 7
allele frequency: 7.118306249872887e-5
allele num: 98338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000527154
  gene symbol: CHMP4A
  hgvsc: ENST00000527154.1:n.417G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.359+9G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.44+9G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.612+5G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.359+9G>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.492+5G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1567+9G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.394+5G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*91+5G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.389+9G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.488+9G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.359+9G>T
  variant of: http://identifiers.org/hgnc/11864
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9123
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10850
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.612+5G>T
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

14-24680612-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24680612
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24680612
    reference: chr 14
allele count: 4
allele frequency: 4.067603571355936e-5
allele num: 98338
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.488+9G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000527154
  gene symbol: CHMP4A
  hgvsc: ENST00000527154.1:n.417G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.492+5G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.612+5G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.394+5G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.359+9G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.359+9G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*91+5G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.359+9G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.44+9G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1567+9G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.389+9G>A
  variant of: http://identifiers.org/hgnc/20274
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21468
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10850
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.612+5G>A
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

14-24680613-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24680613
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24680613
    reference: chr 14
allele count: 8
allele frequency: 8.074772392353191e-5
allele num: 99074
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*91+4C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.389+8C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.359+8C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.612+4C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.488+8C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.394+4C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.359+8C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.492+4C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.44+8C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1567+8C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000527154
  gene symbol: CHMP4A
  hgvsc: ENST00000527154.1:n.416C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.359+8C>T
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8759
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.488+8C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/14-24680616-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24680616
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24680616
    reference: chr 14
allele count: 2
allele frequency: 1.953506544246923e-5
allele num: 102380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.612+1G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.488+5G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.492+1G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.394+1G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1567+5G>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.389+5G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.359+5G>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000527154
  gene symbol: CHMP4A
  hgvsc: ENST00000527154.1:n.413G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*91+1G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.359+5G>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.359+5G>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.44+5G>T
  variant of: http://identifiers.org/hgnc/20274
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7441
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.492+1G>T
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

14-24680623-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24680623
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24680623
    reference: chr 14
allele count: 1
allele frequency: 9.416195856873823e-6
allele num: 106200
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.357C>T
  hgvsp: ENST00000530611.1:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.42C>T
  hgvsp: ENST00000530996.1:c.42C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.486C>T
  hgvsp: ENST00000347519.6:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.388C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.357C>T
  hgvsp: ENST00000556387.1:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1565C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.606C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.387C>T
  hgvsp: ENST00000533011.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.486C>T
  hgvsp: ENST00000533523.1:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.357C>T
  hgvsp: ENST00000609024.1:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000527154
  gene symbol: CHMP4A
  hgvsc: ENST00000527154.1:n.406C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*85C>T
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6419
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.1565C>T
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

14-24680628-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24680628
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24680628
    reference: chr 14
allele count: 3
allele frequency: 2.77623542476402e-5
allele num: 108060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.601C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.382C>T
  hgvsp: ENSP00000432575.1:p.Gln128Ter
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.352C>T
  hgvsp: ENSP00000476412.1:p.Gln118Ter
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.37C>T
  hgvsp: ENSP00000449757.2:p.Gln13Ter
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.481C>T
  hgvsp: ENSP00000436224.1:p.Gln161Ter
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.481C>T
  hgvsp: ENSP00000324205.9:p.Gln161Ter
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*80C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1560C>T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.352C>T
  hgvsp: ENSP00000451949.1:p.Gln118Ter
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000527154
  gene symbol: CHMP4A
  hgvsc: ENST00000527154.1:n.401C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.352C>T
  hgvsp: ENSP00000433967.1:p.Gln118Ter
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.383C>T
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8880
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29726
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln118Ter
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

14-24680654-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24680654
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24680654
    reference: chr 14
allele count: 1
allele frequency: 8.667313826099016e-6
allele num: 115376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.326C>T
  hgvsp: ENSP00000451949.1:p.Ala109Val
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.357C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.356C>T
  hgvsp: ENSP00000432575.1:p.Ala119Val
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.11C>T
  hgvsp: ENSP00000449757.2:p.Ala4Val
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.455C>T
  hgvsp: ENSP00000436224.1:p.Ala152Val
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.326C>T
  hgvsp: ENSP00000433967.1:p.Ala109Val
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.326C>T
  hgvsp: ENSP00000476412.1:p.Ala109Val
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*54C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.455C>T
  hgvsp: ENSP00000324205.9:p.Ala152Val
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1534C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.575C>T
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000527154
  gene symbol: CHMP4A
  hgvsc: ENST00000527154.1:n.375C>T
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala109Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

14-24680660-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24680660
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24680660
    reference: chr 14
allele count: 1
allele frequency: 8.573094201159083e-6
allele num: 116644
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000449757
  ensembl transcript: ENST00000530996
  gene symbol: CHMP4A
  hgvsc: ENST00000530996.1:c.5A>C
  hgvsp: ENSP00000449757.2:p.Glu2Ala
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.320A>C
  hgvsp: ENSP00000433967.1:p.Glu107Ala
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000448869
  ensembl transcript: ENST00000534106
  gene symbol: CHMP4A
  hgvsc: ENST00000534106.1:c.*48A>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000542700
  gene symbol: CHMP4A
  hgvsc: ENST00000542700.2:n.351A>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.449A>C
  hgvsp: ENSP00000436224.1:p.Glu150Ala
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.350A>C
  hgvsp: ENSP00000432575.1:p.Glu117Ala
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.449A>C
  hgvsp: ENSP00000324205.9:p.Glu150Ala
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.569A>C
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000476412
  ensembl transcript: ENST00000609024
  gene symbol: CHMP4A
  hgvsc: ENST00000609024.1:c.320A>C
  hgvsp: ENSP00000476412.1:p.Glu107Ala
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1528A>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.320A>C
  hgvsp: ENSP00000451949.1:p.Glu107Ala
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000527154
  gene symbol: CHMP4A
  hgvsc: ENST00000527154.1:n.369A>C
  variant of: http://identifiers.org/hgnc/20274
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12810
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu107Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

14-24680661-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24680661
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24680661
    reference: chr 14
allele count: 2
allele frequency: 1.713150140478312e-5
allele num: 116744
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000324205
  ensembl transcript: ENST00000347519
  gene symbol: CHMP4A
  hgvsc: ENST00000347519.6:c.448G>A
  hgvsp: ENSP00000324205.9:p.Glu150Lys
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000432575
  ensembl transcript: ENST00000533011
  gene symbol: CHMP4A
  hgvsc: ENST00000533011.1:c.349G>A
  hgvsp: ENSP00000432575.1:p.Glu117Lys
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000552620
  gene symbol: CHMP4A
  hgvsc: ENST00000552620.1:n.568G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000260669
  ensembl transcript: ENST00000565988
  gene symbol: AL136419.6
  hgvsc: ENST00000565988.1:n.1527G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254505
  ensembl transcript: ENST00000527154
  gene symbol: CHMP4A
  hgvsc: ENST00000527154.1:n.368G>A
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000254505
  ensembl protein: ENSP00000436224
  ensembl transcript: ENST00000533523
  gene symbol: CHMP4A
  hgvsc: ENST00000533523.1:c.448G>A
  hgvsp: ENSP00000436224.1:p.Glu150Lys
  variant of: http://identifiers.org/hgnc/20274
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.319G>A
  hgvsp: ENSP00000451949.1:p.Glu107Lys
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.319G>A
  hgvsp: ENSP00000433967.1:p.Glu107Lys
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: missense
filter: PASS
hgvs: p.Glu107Lys
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52001
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 408
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5482
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.599e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.981e0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e-1

DP
type: SiteQuality
SIO_000300: 4.329347e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.61e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.262e0

QD
type: SiteQuality
SIO_000300: 1.281e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
all individuals: 422
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5342
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 1.38264777048047e-3
allele num: 11572
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.432e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.068e0

DP
type: SiteQuality
SIO_000300: 4.331106e6

MQ
type: SiteQuality
SIO_000300: 5.955e1

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.71e0

GenotypeQuality
all individuals: 348
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5049
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52001
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500780405811022e-5
allele num: 66632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.56e-1

DP
type: SiteQuality
SIO_000300: 4.325707e6

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.826e0

QD
type: SiteQuality
SIO_000300: 1.524e1

FS
type: SiteQuality
SIO_000300: 1.428e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5041
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00147072065312e-5
allele num: 66634
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.32e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.325732e6

MQRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

QD
type: SiteQuality
SIO_000300: 1.228e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.045e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.35e-1

GenotypeQuality
all individuals: 345
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52001
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 382
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.946e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: -4.016e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.53e0

QD
type: SiteQuality
SIO_000300: 1.597e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.14e-2

FS
type: SiteQuality
SIO_000300: 5.7e-1

DP
type: SiteQuality
SIO_000300: 4.323406e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.11e-1

GenotypeQuality
all individuals: 258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52003
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4885
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.442002442002442e-4
allele num: 16380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.981e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-1

FS
type: SiteQuality
SIO_000300: 6.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 4.323436e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

QD
type: SiteQuality
SIO_000300: 1.433e1

GenotypeQuality
all individuals: 403
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
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GenotypeQuality
all individuals: 566
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52001
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 367
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.648784253184099e-5
allele num: 10364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

FS
type: SiteQuality
SIO_000300: 1.639e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.406e0

VQSLOD
type: SiteQuality
SIO_000300: 8.9e-2

MQ
type: SiteQuality
SIO_000300: 5.985e1

DP
type: SiteQuality
SIO_000300: 4.309092e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-2

QD
type: SiteQuality
SIO_000300: 1.399e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.182e0

GenotypeQuality
all individuals: 52001
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 490
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3280
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502358703163967e-5
allele num: 66562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16272
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
SIO_000300: 2.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.1e-2

QD
type: SiteQuality
SIO_000300: 1.589e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

DP
type: SiteQuality
SIO_000300: 4.305158e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52002
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2685
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66510
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.234720335843931e-4
allele num: 16198
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.99e-2

FS
type: SiteQuality
SIO_000300: 2.295e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e-1

QD
type: SiteQuality
SIO_000300: 1.382e1

MQ
type: SiteQuality
SIO_000300: 6.034e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

DP
type: SiteQuality
SIO_000300: 4.299263e6

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52003
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
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GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
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variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2166
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503668952243474e-5
allele num: 66504
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.99e-1

QD
type: SiteQuality
SIO_000300: 8.66e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.556e-1

FS
type: SiteQuality
SIO_000300: 1.518e0

MQRankSum
type: SiteQuality
SIO_000300: -5.07e-1

DP
type: SiteQuality
SIO_000300: 4.296146e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.948e0

GenotypeQuality
all individuals: 368
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52001
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 383
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.203586688331227e-4
allele num: 66468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16138
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.295487e6

MQ
type: SiteQuality
SIO_000300: 5.978e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.47e-1

FS
type: SiteQuality
SIO_000300: 7.14e-1

QD
type: SiteQuality
SIO_000300: 1.518e1

VQSLOD
type: SiteQuality
SIO_000300: 2.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-1

GenotypeQuality
all individuals: 868
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52002
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 279
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
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variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
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variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16144018583043e-4
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16082
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

FS
type: SiteQuality
SIO_000300: 6.594e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.295241e6

QD
type: SiteQuality
SIO_000300: 1.636e1

MQRankSum
type: SiteQuality
SIO_000300: 7.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.18e0

GenotypeQuality
all individuals: 63
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52003
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 384
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1786
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16056
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66438
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.771e0

FS
type: SiteQuality
SIO_000300: 1.224e0

MQRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.425e0

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

QD
type: SiteQuality
SIO_000300: 1.203e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.01e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

DP
type: SiteQuality
SIO_000300: 4.295677e6

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2245
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2454
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6557
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39234
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1488
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2335
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158748551564311e-4
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.0e-1

DP
type: SiteQuality
SIO_000300: 3.418106e6

MQ
type: SiteQuality
SIO_000300: 6.046e1

MQRankSum
type: SiteQuality
SIO_000300: 1.7e0

FS
type: SiteQuality
SIO_000300: 6.881e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e0

QD
type: SiteQuality
SIO_000300: 1.343e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e-1

GenotypeQuality
all individuals: 274
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6617
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2249
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2942
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1554
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2464
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39239
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.110975311659741e-5
allele num: 16364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.532e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

FS
type: SiteQuality
SIO_000300: 1.25e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
type: SiteQuality
SIO_000300: 7.54e-1

DP
type: SiteQuality
SIO_000300: 3.419467e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2397
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2535
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3049
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1519
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1611
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2257
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39259
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.45e-1

DP
type: SiteQuality
SIO_000300: 3.428852e6

MQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 5.8e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.56e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.715e0

QD
type: SiteQuality
SIO_000300: 1.507e1

GenotypeQuality
all individuals: 1522
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2408
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7364
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39263
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3085
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.43041e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.876e0

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

MQRankSum
type: SiteQuality
SIO_000300: 6.96e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.87e-1

FS
type: SiteQuality
SIO_000300: 9.167e0

QD
type: SiteQuality
SIO_000300: 1.195e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 3096
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2439
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2574
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1532
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39278
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2275
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.6e0

FS
type: SiteQuality
SIO_000300: 4.048e0

DP
type: SiteQuality
SIO_000300: 3.434298e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.28e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.538e-1

QD
type: SiteQuality
SIO_000300: 1.799e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e-1

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1647
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3131
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2284
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2450
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7566
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2598
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728608470181504e-4
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.994423457456377e-5
allele num: 66708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.87e0

DP
type: SiteQuality
SIO_000300: 3.436382e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.88e0

QD
type: SiteQuality
SIO_000300: 1.596e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

GenotypeQuality
all individuals: 5241
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 7.25e1
variant carriers: 7

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1007
bin: 9.25e1
variant carriers: 15

GenotypeQuality
all individuals: 668
bin: 8.75e1
variant carriers: 10

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 8.25e1
variant carriers: 11

GenotypeQuality
all individuals: 1424
bin: 7.75e1
variant carriers: 8

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1839
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 48390
bin: 9.75e1
variant carriers: 41778

African
type: Population
allele count: 2818
allele frequency: 2.708053046319431e-1
allele num: 10406
num of homozygotes: 406

Latino
type: Population
allele count: 7553
allele frequency: 6.526961631524369e-1
allele num: 11572
num of homozygotes: 2508

Other
type: Population
allele count: 387
allele frequency: 4.280973451327434e-1
allele num: 904
num of homozygotes: 78

South Asian
type: Population
allele count: 4878
allele frequency: 2.954572986069049e-1
allele num: 16510
num of homozygotes: 772

European (Finnish)
type: Population
allele count: 3340
allele frequency: 5.051421657592257e-1
allele num: 6612
num of homozygotes: 839

East Asian
type: Population
allele count: 2035
allele frequency: 2.355324074074074e-1
allele num: 8640
num of homozygotes: 245

European (Non-Finnish)
type: Population
allele count: 34715
allele frequency: 5.202775612972843e-1
allele num: 66724
num of homozygotes: 9027

BaseQRankSum
type: SiteQuality
SIO_000300: -1.458e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.569999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.31e-1

QD
type: SiteQuality
SIO_000300: 2.06e1

VQSLOD
type: SiteQuality
SIO_000300: 5.23e0

DP
type: SiteQuality
SIO_000300: 5.601973e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.09e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeDepth
all individuals: 2761
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4072
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1872
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3380
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2920
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15437
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6085
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21845
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4604
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4237
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2175
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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DP
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SIO_000300: 2.695031e6

QD
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SIO_000300: 2.009e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

South Asian
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

African
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allele frequency: 9.611687812379854e-5
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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SIO_000300: -1.3e-1

InbreedingCoeff
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VQSLOD
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ClippingRankSum
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DP
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FS
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MQ
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ReadPosRankSum
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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num of homozygotes: 0

Latino
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

ClippingRankSum
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BaseQRankSum
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DP
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MQRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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FS
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ReadPosRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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SIO_000300: 1.323e1

BaseQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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DP
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MQRankSum
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ClippingRankSum
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16512
num of homozygotes: 0

Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
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European (Non-Finnish)
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allele frequency: 1.04887770086008e-4
allele num: 66738
num of homozygotes: 0

European (Finnish)
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Other
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East Asian
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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QD
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DP
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InbreedingCoeff
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FS
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Non-Finnish)
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Latino
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East Asian
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European (Finnish)
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South Asian
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VQSLOD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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DP
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FS
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ClippingRankSum
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InbreedingCoeff
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Non-Finnish)
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African
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European (Finnish)
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Latino
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South Asian
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQRankSum
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DP
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

South Asian
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African
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MQ
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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QD
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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European (Finnish)
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East Asian
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South Asian
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VQSLOD
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MQ
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DP
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QD
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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East Asian
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African
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Latino
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European (Non-Finnish)
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VQSLOD
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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MQ
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QD
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FS
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Latino
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South Asian
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MQ
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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DP
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QD
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FS
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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South Asian
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VQSLOD
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FS
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ReadPosRankSum
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MQ
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QD
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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European (Non-Finnish)
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MQ
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FS
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InbreedingCoeff
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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FS
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MQ
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ClippingRankSum
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VQSLOD
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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FS
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QD
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DP
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InbreedingCoeff
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VQSLOD
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MQRankSum
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SIO_000300: -1.12e-1

MQ
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SIO_000300: 5.96e1

BaseQRankSum
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ReadPosRankSum
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SIO_000300: 3.35e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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allele num: 66738
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South Asian
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MQ
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SIO_000300: 5.973e1

InbreedingCoeff
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DP
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QD
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BaseQRankSum
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FS
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VQSLOD
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: -6.99e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele num: 66738
num of homozygotes: 0

Latino
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South Asian
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allele num: 16512
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

East Asian
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allele num: 8654
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Other
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BaseQRankSum
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MQ
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VQSLOD
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DP
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ReadPosRankSum
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FS
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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SIO_000300: -3.3e-1

QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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South Asian
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ClippingRankSum
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SIO_000300: -4.14e-1

MQRankSum
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DP
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MQ
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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FS
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QD
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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African
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Other
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South Asian
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VQSLOD
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FS
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InbreedingCoeff
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MQ
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QD
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

African
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European (Finnish)
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South Asian
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Latino
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European (Non-Finnish)
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Other
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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MQ
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MQRankSum
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FS
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DP
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele num: 66736
num of homozygotes: 0

East Asian
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Latino
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South Asian
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African
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European (Finnish)
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Other
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ReadPosRankSum
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MQ
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BaseQRankSum
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DP
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ClippingRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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FS
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 5.995743022454058e-5
allele num: 66714
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.28e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

DP
type: SiteQuality
SIO_000300: 2.685749e6

BaseQRankSum
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SIO_000300: -4.577e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.43e-1

ReadPosRankSum
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SIO_000300: 6.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
all individuals: 6096
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 15471
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 3.843936190659235e-4
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 7.7e-2

MQRankSum
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SIO_000300: -3.17e-1

ClippingRankSum
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SIO_000300: 7.47e-1

MQ
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SIO_000300: 5.981e1

VQSLOD
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DP
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SIO_000300: 2.685422e6

QD
type: SiteQuality
SIO_000300: 1.303e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.37e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 2923
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.382e0

DP
type: SiteQuality
SIO_000300: 2.684658e6

FS
type: SiteQuality
SIO_000300: 3.358e0

QD
type: SiteQuality
SIO_000300: 1.242e1

VQSLOD
type: SiteQuality
SIO_000300: 3.09e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

GenotypeDepth
all individuals: 624
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variant carriers: 1

GenotypeQuality
all individuals: 67
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4602
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variant carriers: 0

GenotypeQuality
all individuals: 2910
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21300339640951e-4
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.998980173370527e-5
allele num: 66678
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728608470181504e-4
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

VQSLOD
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SIO_000300: 1.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e0

QD
type: SiteQuality
SIO_000300: 1.595e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 4.104e0

DP
type: SiteQuality
SIO_000300: 2.680751e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 623
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 61
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 350
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variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 2166
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 59
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GenotypeQuality
all individuals: 21711
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.074596039363382e-5
allele num: 16462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.820000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.235e0

DP
type: SiteQuality
SIO_000300: 2.669544e6

MQRankSum
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QD
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ClippingRankSum
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SIO_000300: -6.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.088e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeDepth
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bin: 7.25e1
variant carriers: 6

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 236
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GenotypeQuality
all individuals: 21727
bin: 9.75e1
variant carriers: 55

GenotypeQuality
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GenotypeQuality
all individuals: 2157
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GenotypeQuality
all individuals: 256
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 28
allele frequency: 1.704614635334226e-3
allele num: 16426
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 20
allele frequency: 2.317497103128621e-3
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.050861706599412e-4
allele num: 66612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

DP
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BaseQRankSum
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QD
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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SIO_000300: 7.199999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 81

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4218

GenotypeQuality
all individuals: 227
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variant carriers: 1

African
type: Population
allele count: 79
allele frequency: 7.597614925947298e-3
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 32
allele frequency: 3.524229074889868e-2
allele num: 908
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 3507
allele frequency: 5.265765765765766e-2
allele num: 66600
num of homozygotes: 95

Latino
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allele count: 262
allele frequency: 2.266828170963835e-2
allele num: 11558
num of homozygotes: 4

South Asian
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allele count: 212
allele frequency: 1.289694610049884e-2
allele num: 16438
num of homozygotes: 0

European (Finnish)
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allele count: 249
allele frequency: 3.767019667170953e-2
allele num: 6610
num of homozygotes: 6

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

FS
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ClippingRankSum
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VQSLOD
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MQ
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DP
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QD
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ReadPosRankSum
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InbreedingCoeff
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SIO_000300: 1.34e-2

BaseQRankSum
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SIO_000300: -4.082e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 830
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.087909411907951e-5
allele num: 16426
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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FS
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MQ
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DP
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BaseQRankSum
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QD
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MQRankSum
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SIO_000300: 7.26e-1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.656509695290859e-5
allele num: 11552
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
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Other
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InbreedingCoeff
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ReadPosRankSum
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MQ
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ClippingRankSum
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BaseQRankSum
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FS
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DP
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QD
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VQSLOD
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MQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 1.925298421255295e-4
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

QD
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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DP
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MQRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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MQ
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SIO_000300: 6.027e1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506250941406838e-5
allele num: 66390
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FS
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SIO_000300: 0.0e0

QD
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQ
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VQSLOD
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MQRankSum
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SIO_000300: 3.6e-2

BaseQRankSum
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ClippingRankSum
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SIO_000300: -2.27e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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East Asian
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European (Non-Finnish)
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QD
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ReadPosRankSum
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MQRankSum
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DP
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FS
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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Latino
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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African
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European (Non-Finnish)
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allele frequency: 9.378960709759188e-4
allele num: 39450
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FS
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DP
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
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BaseQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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East Asian
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European (Non-Finnish)
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South Asian
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Other
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European (Finnish)
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VQSLOD
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MQRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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FS
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MQ
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ReadPosRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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allele num: 13054
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.958326805577315e-5
allele num: 51064
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.44e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.19e0

QD
type: SiteQuality
SIO_000300: 1.342e1

DP
type: SiteQuality
SIO_000300: 1.260975e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 921
bin: 9.75e1
variant carriers: 585

GenotypeQuality
all individuals: 934
bin: 2.5e0
variant carriers: 20

GenotypeQuality
all individuals: 1028
bin: 5.25e1
variant carriers: 123

GenotypeQuality
all individuals: 620
bin: 7.25e1
variant carriers: 186

GenotypeQuality
all individuals: 3759
bin: 3.25e1
variant carriers: 102

GenotypeQuality
all individuals: 395
bin: 9.25e1
variant carriers: 215

GenotypeQuality
all individuals: 14067
bin: 9.75e1
variant carriers: 11624

GenotypeQuality
all individuals: 1997
bin: 3.75e1
variant carriers: 114

GenotypeQuality
all individuals: 511
bin: 1.75e1
variant carriers: 22

GenotypeQuality
all individuals: 885
bin: 4.25e1
variant carriers: 111

GenotypeQuality
all individuals: 413
bin: 1.25e1
variant carriers: 36

GenotypeQuality
all individuals: 339
bin: 8.75e1
variant carriers: 217

GenotypeQuality
all individuals: 13087
bin: 2.25e1
variant carriers: 51

GenotypeQuality
all individuals: 1657
bin: 6.75e1
variant carriers: 203

GenotypeQuality
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bin: 6.25e1
variant carriers: 189

GenotypeQuality
all individuals: 621
bin: 7.5e0
variant carriers: 25

GenotypeQuality
all individuals: 3297
bin: 2.75e1
variant carriers: 69

GenotypeQuality
all individuals: 445
bin: 8.25e1
variant carriers: 159

GenotypeQuality
all individuals: 1022
bin: 4.75e1
variant carriers: 155

GenotypeQuality
all individuals: 607
bin: 5.75e1
variant carriers: 171

GenotypeQuality
all individuals: 609
bin: 7.75e1
variant carriers: 163

European (Finnish)
type: Population
allele count: 1092
allele frequency: 2.21501014198783e-1
allele num: 4930
num of homozygotes: 96

Latino
type: Population
allele count: 551
allele frequency: 7.213930348258707e-2
allele num: 7638
num of homozygotes: 20

South Asian
type: Population
allele count: 2369
allele frequency: 1.81476941933507e-1
allele num: 13054
num of homozygotes: 209

European (Non-Finnish)
type: Population
allele count: 8219
allele frequency: 1.609548801503995e-1
allele num: 51064
num of homozygotes: 492

East Asian
type: Population
allele count: 800
allele frequency: 1.244555071561917e-1
allele num: 6428
num of homozygotes: 37

African
type: Population
allele count: 1130
allele frequency: 1.423173803526448e-1
allele num: 7940
num of homozygotes: 61

Other
type: Population
allele count: 140
allele frequency: 1.96078431372549e-1
allele num: 714
num of homozygotes: 19

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.44e-2

QD
type: SiteQuality
SIO_000300: 1.342e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

DP
type: SiteQuality
SIO_000300: 1.260975e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

GenotypeDepth
all individuals: 338
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 240
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variant carriers: 0

GenotypeQuality
all individuals: 313
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 842
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3506
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variant carriers: 0

GenotypeQuality
all individuals: 367
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variant carriers: 1

GenotypeQuality
all individuals: 1004
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13534
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.255878e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e-1

QD
type: SiteQuality
SIO_000300: 1.189e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.68e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

GenotypeDepth
all individuals: 20953
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 384
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variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 313
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 592
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variant carriers: 0

GenotypeQuality
all individuals: 995
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variant carriers: 0

GenotypeQuality
all individuals: 1995
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variant carriers: 0

GenotypeQuality
all individuals: 3274
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 277
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1387
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variant carriers: 0

GenotypeQuality
all individuals: 92
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GenotypeQuality
all individuals: 3510
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1016
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variant carriers: 0

GenotypeQuality
all individuals: 4151
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
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GenotypeQuality
all individuals: 12482
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13656
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.431024613623354e-4
allele num: 6988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.003e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.916e-1

DP
type: SiteQuality
SIO_000300: 1.272423e6

MQ
type: SiteQuality
SIO_000300: 5.939e1

QD
type: SiteQuality
SIO_000300: 1.117e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.237e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.65e-1

GenotypeDepth
all individuals: 744
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21468
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variant carriers: 1

GenotypeQuality
all individuals: 220
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 12141
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variant carriers: 1

GenotypeQuality
all individuals: 1404
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variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 2199
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 975
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variant carriers: 0

GenotypeQuality
all individuals: 148
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variant carriers: 0

GenotypeQuality
all individuals: 1894
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variant carriers: 1

GenotypeQuality
all individuals: 295
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 321
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3510
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 687
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13718
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.589375448671931e-4
allele num: 8358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.650167907723755e-5
allele num: 54792
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.847380410022779e-4
allele num: 7024
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.79e-1

DP
type: SiteQuality
SIO_000300: 1.282537e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.119e0

QD
type: SiteQuality
SIO_000300: 8.369999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 9.4e-2

FS
type: SiteQuality
SIO_000300: 2.173e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.15e-1

GenotypeDepth
all individuals: 182
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variant carriers: 0

GenotypeDepth
all individuals: 133
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variant carriers: 0

GenotypeQuality
all individuals: 975
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 220
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GenotypeQuality
all individuals: 1404
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GenotypeQuality
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GenotypeQuality
all individuals: 576
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GenotypeQuality
all individuals: 687
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GenotypeQuality
all individuals: 3014
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GenotypeQuality
all individuals: 2795
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 989
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GenotypeQuality
all individuals: 3211
bin: 2.75e1
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GenotypeQuality
all individuals: 12141
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GenotypeQuality
all individuals: 2199
bin: 4.75e1
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GenotypeQuality
all individuals: 21730
bin: 6.25e1
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GenotypeQuality
all individuals: 321
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.533568904593639e-4
allele num: 8490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.825083953861878e-5
allele num: 54792
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13718
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.87e-1

FS
type: SiteQuality
SIO_000300: 2.173e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.15e-1

DP
type: SiteQuality
SIO_000300: 1.282537e6

VQSLOD
type: SiteQuality
SIO_000300: 9.4e-2

QD
type: SiteQuality
SIO_000300: 8.369999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.119e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 228
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GenotypeQuality
all individuals: 222
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.441288497116117e-5
allele num: 55134
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5218
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.347708894878706e-3
allele num: 742
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.892681515765114e-4
allele num: 13828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.9e-2

DP
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QD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: -3.11e-1

FS
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SIO_000300: 1.686e0

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1103
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.515679932498945e-5
allele num: 56888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9072
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

QD
type: SiteQuality
SIO_000300: 1.5e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.333942e6

VQSLOD
type: SiteQuality
SIO_000300: 4.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.906e1

GenotypeDepth
all individuals: 239
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 7.75e1
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GenotypeQuality
all individuals: 833
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.044277360066834e-4
allele num: 9576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8992
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59000
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.866e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.12e-1

QD
type: SiteQuality
SIO_000300: 7.09e0

DP
type: SiteQuality
SIO_000300: 1.383581e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.53e-1

GenotypeDepth
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bin: 7.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1075
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variant carriers: 0

GenotypeQuality
all individuals: 4044
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9842
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.265822784810127e-3
allele num: 790
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9106
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.276813074565884e-4
allele num: 7832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5636
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.731287022078621e-5
allele num: 14856
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.45e-1

DP
type: SiteQuality
SIO_000300: 1.413294e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.850000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.85e0

GenotypeDepth
all individuals: 180
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 174
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variant carriers: 0

GenotypeDepth
all individuals: 182
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5012
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
all individuals: 512
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 3529
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.564749327157789e-5
allele num: 63908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6058
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15746
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10780
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9668
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -9.91e-1

FS
type: SiteQuality
SIO_000300: 2.272e0

DP
type: SiteQuality
SIO_000300: 1.531573e6

MQRankSum
type: SiteQuality
SIO_000300: 9.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 9.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeDepth
all individuals: 209
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 1717
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 722
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GenotypeQuality
all individuals: 377
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64516
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10964
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.183992422448496e-4
allele num: 8446
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.917e1

FS
type: SiteQuality
SIO_000300: 5.032e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.46e-1

BaseQRankSum
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SIO_000300: -1.37e-1

ReadPosRankSum
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SIO_000300: 1.65e0

MQRankSum
type: SiteQuality
SIO_000300: 4.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

DP
type: SiteQuality
SIO_000300: 1.550795e6

QD
type: SiteQuality
SIO_000300: 1.299e1