17-57775303-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57775303
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57775303
    reference: chr 17
allele count: 1
allele frequency: 8.321405984755183e-6
allele num: 120172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000376758
  ensembl transcript: ENST00000393038
  gene symbol: PTRH2
  hgvsc: ENST00000393038.2:c.37C>T
  hgvsp: ENSP00000376758.2:p.His13Tyr
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000437690
  ensembl transcript: ENST00000537860
  gene symbol: PTRH2
  hgvsc: ENST00000537860.1:c.37C>T
  hgvsp: ENSP00000437690.1:p.His13Tyr
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000464327
  ensembl transcript: ENST00000470557
  gene symbol: PTRH2
  hgvsc: ENST00000470557.2:c.37C>T
  hgvsp: ENSP00000464327.1:p.His13Tyr
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000387180
  ensembl transcript: ENST00000409433
  gene symbol: PTRH2
  hgvsc: ENST00000409433.2:c.40C>T
  hgvsp: ENSP00000387180.2:p.His14Tyr
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl transcript: ENST00000587935
  gene symbol: PTRH2
  hgvsc: ENST00000587935.1:n.45+9429C>T
  variant of: http://identifiers.org/hgnc/24265
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7360
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6825
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 7.75e1
  variant carriers: 0
hgvs: p.His13Tyr
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD

17-57775304-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57775304
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57775304
    reference: chr 17
allele count: 1
allele frequency: 8.323483877411729e-6
allele num: 120142
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000387180
  ensembl transcript: ENST00000409433
  gene symbol: PTRH2
  hgvsc: ENST00000409433.2:c.39T>A
  hgvsp: ENST00000409433.2:c.39T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000437690
  ensembl transcript: ENST00000537860
  gene symbol: PTRH2
  hgvsc: ENST00000537860.1:c.36T>A
  hgvsp: ENST00000537860.1:c.36T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000464327
  ensembl transcript: ENST00000470557
  gene symbol: PTRH2
  hgvsc: ENST00000470557.2:c.36T>A
  hgvsp: ENST00000470557.2:c.36T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl transcript: ENST00000587935
  gene symbol: PTRH2
  hgvsc: ENST00000587935.1:n.45+9428T>A
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000376758
  ensembl transcript: ENST00000393038
  gene symbol: PTRH2
  hgvsc: ENST00000393038.2:c.36T>A
  hgvsp: ENST00000393038.2:c.36T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24265
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6820
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47093
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 865
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala12Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

17-57775306-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57775306
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57775306
    reference: chr 17
allele count: 1
allele frequency: 8.337224037884346e-6
allele num: 119944
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000464327
  ensembl transcript: ENST00000470557
  gene symbol: PTRH2
  hgvsc: ENST00000470557.2:c.34G>C
  hgvsp: ENSP00000464327.1:p.Ala12Pro
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000387180
  ensembl transcript: ENST00000409433
  gene symbol: PTRH2
  hgvsc: ENST00000409433.2:c.37G>C
  hgvsp: ENSP00000387180.2:p.Ala13Pro
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl transcript: ENST00000587935
  gene symbol: PTRH2
  hgvsc: ENST00000587935.1:n.45+9426G>C
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000376758
  ensembl transcript: ENST00000393038
  gene symbol: PTRH2
  hgvsc: ENST00000393038.2:c.34G>C
  hgvsp: ENSP00000376758.2:p.Ala12Pro
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000437690
  ensembl transcript: ENST00000537860
  gene symbol: PTRH2
  hgvsc: ENST00000537860.1:c.34G>C
  hgvsp: ENSP00000437690.1:p.Ala12Pro
  variant of: http://identifiers.org/hgnc/24265
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28953
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 161
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genotype quality: GenotypeQuality
  all individuals: 25
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala12Pro
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

17-57775329-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57775329
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57775329
    reference: chr 17
allele count: 1
allele frequency: 8.461382251404589e-6
allele num: 118184
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000437690
  ensembl transcript: ENST00000537860
  gene symbol: PTRH2
  hgvsc: ENST00000537860.1:c.11A>C
  hgvsp: ENSP00000437690.1:p.Lys4Thr
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000464327
  ensembl transcript: ENST00000470557
  gene symbol: PTRH2
  hgvsc: ENST00000470557.2:c.11A>C
  hgvsp: ENSP00000464327.1:p.Lys4Thr
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000387180
  ensembl transcript: ENST00000409433
  gene symbol: PTRH2
  hgvsc: ENST00000409433.2:c.14A>C
  hgvsp: ENSP00000387180.2:p.Lys5Thr
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000376758
  ensembl transcript: ENST00000393038
  gene symbol: PTRH2
  hgvsc: ENST00000393038.2:c.11A>C
  hgvsp: ENSP00000376758.2:p.Lys4Thr
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl transcript: ENST00000587935
  gene symbol: PTRH2
  hgvsc: ENST00000587935.1:n.45+9403A>C
  variant of: http://identifiers.org/hgnc/24265
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6929
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2146
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
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genotype quality: GenotypeQuality
  all individuals: 192
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2795
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys4Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

17-57775342-TAAAGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57775342
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57775337
    reference: chr 17
allele count: 1
allele frequency: 8.657109218089895e-6
allele num: 115512
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000437690
  ensembl transcript: ENST00000537860
  gene symbol: PTRH2
  hgvsc: ENST00000537860.1:c.1-8_1-4delCCTTT
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000387180
  ensembl transcript: ENST00000409433
  gene symbol: PTRH2
  hgvsc: ENST00000409433.2:c.4-8_4-4delCCTTT
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl transcript: ENST00000587935
  gene symbol: PTRH2
  hgvsc: ENST00000587935.1:n.45+9385_45+9389delCCTTT
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000376758
  ensembl transcript: ENST00000393038
  gene symbol: PTRH2
  hgvsc: ENST00000393038.2:c.1-8_1-4delCCTTT
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000464327
  ensembl transcript: ENST00000470557
  gene symbol: PTRH2
  hgvsc: ENST00000470557.2:c.-8_-4delCCTTT
  variant of: http://identifiers.org/hgnc/24265
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40619
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5918
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1-8_1-4delCCTTT
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: TAAAGG
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP

17-57775343-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57775343
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57775343
    reference: chr 17
allele count: 4
allele frequency: 3.485656523406183e-5
allele num: 114756
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000387180
  ensembl transcript: ENST00000409433
  gene symbol: PTRH2
  hgvsc: ENST00000409433.2:c.4-4T>C
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl transcript: ENST00000587935
  gene symbol: PTRH2
  hgvsc: ENST00000587935.1:n.45+9389T>C
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000437690
  ensembl transcript: ENST00000537860
  gene symbol: PTRH2
  hgvsc: ENST00000537860.1:c.1-4T>C
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000376758
  ensembl transcript: ENST00000393038
  gene symbol: PTRH2
  hgvsc: ENST00000393038.2:c.1-4T>C
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000464327
  ensembl transcript: ENST00000470557
  gene symbol: PTRH2
  hgvsc: ENST00000470557.2:c.-4T>C
  variant of: http://identifiers.org/hgnc/24265
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24448
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6615
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37940
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5186
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1-4T>C
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

17-57775346-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57775346
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57775346
    reference: chr 17
allele count: 3
allele frequency: 2.616659398168338e-5
allele num: 114650
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000376758
  ensembl transcript: ENST00000393038
  gene symbol: PTRH2
  hgvsc: ENST00000393038.2:c.1-7C>T
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000437690
  ensembl transcript: ENST00000537860
  gene symbol: PTRH2
  hgvsc: ENST00000537860.1:c.1-7C>T
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000387180
  ensembl transcript: ENST00000409433
  gene symbol: PTRH2
  hgvsc: ENST00000409433.2:c.4-7C>T
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl transcript: ENST00000587935
  gene symbol: PTRH2
  hgvsc: ENST00000587935.1:n.45+9386C>T
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000464327
  ensembl transcript: ENST00000470557
  gene symbol: PTRH2
  hgvsc: ENST00000470557.2:c.-7C>T
  variant of: http://identifiers.org/hgnc/24265
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24337
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6641
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16854
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5104
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38888
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7023
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1-7C>T
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

17-57775347-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57775347
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57775347
    reference: chr 17
allele count: 1
allele frequency: 8.739119795854162e-6
allele num: 114428
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000437690
  ensembl transcript: ENST00000537860
  gene symbol: PTRH2
  hgvsc: ENST00000537860.1:c.1-8C>T
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl transcript: ENST00000587935
  gene symbol: PTRH2
  hgvsc: ENST00000587935.1:n.45+9385C>T
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000387180
  ensembl transcript: ENST00000409433
  gene symbol: PTRH2
  hgvsc: ENST00000409433.2:c.4-8C>T
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000376758
  ensembl transcript: ENST00000393038
  gene symbol: PTRH2
  hgvsc: ENST00000393038.2:c.1-8C>T
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000464327
  ensembl transcript: ENST00000470557
  gene symbol: PTRH2
  hgvsc: ENST00000470557.2:c.-8C>T
  variant of: http://identifiers.org/hgnc/24265
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7039
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5916
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5032
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7327
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 7.75e1
  variant carriers: 0
hgvs: c.1-8C>T
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/17-57775353-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57775353
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57775353
    reference: chr 17
allele count: 3
allele frequency: 2.659055857900055e-5
allele num: 112822
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl transcript: ENST00000587935
  gene symbol: PTRH2
  hgvsc: ENST00000587935.1:n.45+9379T>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000376758
  ensembl transcript: ENST00000393038
  gene symbol: PTRH2
  hgvsc: ENST00000393038.2:c.1-14T>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000464327
  ensembl transcript: ENST00000470557
  gene symbol: PTRH2
  hgvsc: ENST00000470557.2:c.-14T>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000437690
  ensembl transcript: ENST00000537860
  gene symbol: PTRH2
  hgvsc: ENST00000537860.1:c.1-14T>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000387180
  ensembl transcript: ENST00000409433
  gene symbol: PTRH2
  hgvsc: ENST00000409433.2:c.4-14T>G
  variant of: http://identifiers.org/hgnc/24265
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21562
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14564
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9776
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4627
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34050
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2825
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2392
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

17-57775353-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57775353
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57775353
    reference: chr 17
allele count: 1
allele frequency: 8.863519526333516e-6
allele num: 112822
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000437690
  ensembl transcript: ENST00000537860
  gene symbol: PTRH2
  hgvsc: ENST00000537860.1:c.1-14T>C
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl transcript: ENST00000587935
  gene symbol: PTRH2
  hgvsc: ENST00000587935.1:n.45+9379T>C
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000376758
  ensembl transcript: ENST00000393038
  gene symbol: PTRH2
  hgvsc: ENST00000393038.2:c.1-14T>C
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000464327
  ensembl transcript: ENST00000470557
  gene symbol: PTRH2
  hgvsc: ENST00000470557.2:c.-14T>C
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000387180
  ensembl transcript: ENST00000409433
  gene symbol: PTRH2
  hgvsc: ENST00000409433.2:c.4-14T>C
  variant of: http://identifiers.org/hgnc/24265
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14564
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34050
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2392
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2825
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9776
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-57775355-AAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57775355
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57775353
    reference: chr 17
allele count: 1
allele frequency: 8.922039221284417e-6
allele num: 112082
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000376758
  ensembl transcript: ENST00000393038
  gene symbol: PTRH2
  hgvsc: ENST00000393038.2:c.1-18_1-17delGT
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl transcript: ENST00000587935
  gene symbol: PTRH2
  hgvsc: ENST00000587935.1:n.45+9375_45+9376delGT
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000464327
  ensembl transcript: ENST00000470557
  gene symbol: PTRH2
  hgvsc: ENST00000470557.2:c.-18_-17delGT
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000387180
  ensembl transcript: ENST00000409433
  gene symbol: PTRH2
  hgvsc: ENST00000409433.2:c.4-18_4-17delGT
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000437690
  ensembl transcript: ENST00000537860
  gene symbol: PTRH2
  hgvsc: ENST00000537860.1:c.1-18_1-17delGT
  variant of: http://identifiers.org/hgnc/24265
canonical: true
consequence: 5' UTR
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12546
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13014
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3655
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3618
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3005
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4315
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: AAC
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

17-57775360-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57775360
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57775360
    reference: chr 17
allele count: 1
allele frequency: 9.005763688760807e-6
allele num: 111040
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000437690
  ensembl transcript: ENST00000537860
  gene symbol: PTRH2
  hgvsc: ENST00000537860.1:c.1-21A>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000376758
  ensembl transcript: ENST00000393038
  gene symbol: PTRH2
  hgvsc: ENST00000393038.2:c.1-21A>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000387180
  ensembl transcript: ENST00000409433
  gene symbol: PTRH2
  hgvsc: ENST00000409433.2:c.4-21A>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000464327
  ensembl transcript: ENST00000470557
  gene symbol: PTRH2
  hgvsc: ENST00000470557.2:c.-21A>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl transcript: ENST00000587935
  gene symbol: PTRH2
  hgvsc: ENST00000587935.1:n.45+9372A>G
  variant of: http://identifiers.org/hgnc/24265
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4982
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3667
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12514
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3913
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4638
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-57775363-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57775363
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57775363
    reference: chr 17
allele count: 1
allele frequency: 9.075233687267447e-6
allele num: 110190
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000387180
  ensembl transcript: ENST00000409433
  gene symbol: PTRH2
  hgvsc: ENST00000409433.2:c.4-24A>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000437690
  ensembl transcript: ENST00000537860
  gene symbol: PTRH2
  hgvsc: ENST00000537860.1:c.1-24A>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000464327
  ensembl transcript: ENST00000470557
  gene symbol: PTRH2
  hgvsc: ENST00000470557.2:c.-24A>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000376758
  ensembl transcript: ENST00000393038
  gene symbol: PTRH2
  hgvsc: ENST00000393038.2:c.1-24A>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl transcript: ENST00000587935
  gene symbol: PTRH2
  hgvsc: ENST00000587935.1:n.45+9369A>G
  variant of: http://identifiers.org/hgnc/24265
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5984
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4473
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22255
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3508
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13563
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3596
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

17-57775371-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57775371
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57775371
    reference: chr 17
allele count: 1
allele frequency: 9.296790747833847e-6
allele num: 107564
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000464327
  ensembl transcript: ENST00000470557
  gene symbol: PTRH2
  hgvsc: ENST00000470557.2:c.-32G>A
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl transcript: ENST00000587935
  gene symbol: PTRH2
  hgvsc: ENST00000587935.1:n.45+9361G>A
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000437690
  ensembl transcript: ENST00000537860
  gene symbol: PTRH2
  hgvsc: ENST00000537860.1:c.1-32G>A
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000387180
  ensembl transcript: ENST00000409433
  gene symbol: PTRH2
  hgvsc: ENST00000409433.2:c.4-32G>A
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000376758
  ensembl transcript: ENST00000393038
  gene symbol: PTRH2
  hgvsc: ENST00000393038.2:c.1-32G>A
  variant of: http://identifiers.org/hgnc/24265
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19730
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9955
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11722
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15687
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5359
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2283
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8002
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

17-57775372-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57775372
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57775372
    reference: chr 17
allele count: 4
allele frequency: 3.729256013425322e-5
allele num: 107260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000437690
  ensembl transcript: ENST00000537860
  gene symbol: PTRH2
  hgvsc: ENST00000537860.1:c.1-33C>T
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000464327
  ensembl transcript: ENST00000470557
  gene symbol: PTRH2
  hgvsc: ENST00000470557.2:c.-33C>T
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000387180
  ensembl transcript: ENST00000409433
  gene symbol: PTRH2
  hgvsc: ENST00000409433.2:c.4-33C>T
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000376758
  ensembl transcript: ENST00000393038
  gene symbol: PTRH2
  hgvsc: ENST00000393038.2:c.1-33C>T
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl transcript: ENST00000587935
  gene symbol: PTRH2
  hgvsc: ENST00000587935.1:n.45+9360C>T
  variant of: http://identifiers.org/hgnc/24265
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8189
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5687
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19948
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9380
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5600
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 14613
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-57775380-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57775380
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57775380
    reference: chr 17
allele count: 1
allele frequency: 9.544170420707032e-6
allele num: 104776
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000464327
  ensembl transcript: ENST00000470557
  gene symbol: PTRH2
  hgvsc: ENST00000470557.2:c.-41G>A
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000376758
  ensembl transcript: ENST00000393038
  gene symbol: PTRH2
  hgvsc: ENST00000393038.2:c.1-41G>A
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000437690
  ensembl transcript: ENST00000537860
  gene symbol: PTRH2
  hgvsc: ENST00000537860.1:c.1-41G>A
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl transcript: ENST00000587935
  gene symbol: PTRH2
  hgvsc: ENST00000587935.1:n.45+9352G>A
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000387180
  ensembl transcript: ENST00000409433
  gene symbol: PTRH2
  hgvsc: ENST00000409433.2:c.4-41G>A
  variant of: http://identifiers.org/hgnc/24265
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6754
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19866
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16752
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 771
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13996
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9185
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2648
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7285
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9513
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/17-57775382-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57775382
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57775382
    reference: chr 17
allele count: 1
allele frequency: 9.570110630478889e-6
allele num: 104492
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000376758
  ensembl transcript: ENST00000393038
  gene symbol: PTRH2
  hgvsc: ENST00000393038.2:c.1-43T>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000464327
  ensembl transcript: ENST00000470557
  gene symbol: PTRH2
  hgvsc: ENST00000470557.2:c.-43T>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000437690
  ensembl transcript: ENST00000537860
  gene symbol: PTRH2
  hgvsc: ENST00000537860.1:c.1-43T>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000387180
  ensembl transcript: ENST00000409433
  gene symbol: PTRH2
  hgvsc: ENST00000409433.2:c.4-43T>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl transcript: ENST00000587935
  gene symbol: PTRH2
  hgvsc: ENST00000587935.1:n.45+9350T>G
  variant of: http://identifiers.org/hgnc/24265
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7092
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16942
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13666
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7578
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3324
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5926
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8279
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9306
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-57775387-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57775387
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57775387
    reference: chr 17
allele count: 4
allele frequency: 3.93623302499508e-5
allele num: 101620
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000376758
  ensembl transcript: ENST00000393038
  gene symbol: PTRH2
  hgvsc: ENST00000393038.2:c.1-48G>T
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000387180
  ensembl transcript: ENST00000409433
  gene symbol: PTRH2
  hgvsc: ENST00000409433.2:c.4-48G>T
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000464327
  ensembl transcript: ENST00000470557
  gene symbol: PTRH2
  hgvsc: ENST00000470557.2:c.-48G>T
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000437690
  ensembl transcript: ENST00000537860
  gene symbol: PTRH2
  hgvsc: ENST00000537860.1:c.1-48G>T
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl transcript: ENST00000587935
  gene symbol: PTRH2
  hgvsc: ENST00000587935.1:n.45+9345G>T
  variant of: http://identifiers.org/hgnc/24265
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8012
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8652
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16697
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18987
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12209
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4657
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7808
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2494
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3184
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9348
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD

17-57776189-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57776189
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57776189
    reference: chr 17
allele count: 1
allele frequency: 7.232749891508752e-5
allele num: 13826
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000387180
  ensembl transcript: ENST00000409433
  gene symbol: PTRH2
  hgvsc: ENST00000409433.2:c.3+43A>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000437690
  ensembl transcript: ENST00000537860
  gene symbol: PTRH2
  hgvsc: ENST00000537860.1:c.-1+43A>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl transcript: ENST00000587935
  gene symbol: PTRH2
  hgvsc: ENST00000587935.1:n.45+8543A>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000376758
  ensembl transcript: ENST00000393038
  gene symbol: PTRH2
  hgvsc: ENST00000393038.2:c.1-850A>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000464327
  ensembl transcript: ENST00000470557
  gene symbol: PTRH2
  hgvsc: ENST00000470557.2:c.-850A>G
  variant of: http://identifiers.org/hgnc/24265
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 275
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 265
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum

17-57776213-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57776213
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57776213
    reference: chr 17
allele count: 5
allele frequency: 3.561253561253561e-4
allele num: 14040
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl transcript: ENST00000587935
  gene symbol: PTRH2
  hgvsc: ENST00000587935.1:n.45+8519A>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000387180
  ensembl transcript: ENST00000409433
  gene symbol: PTRH2
  hgvsc: ENST00000409433.2:c.3+19A>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000376758
  ensembl transcript: ENST00000393038
  gene symbol: PTRH2
  hgvsc: ENST00000393038.2:c.1-874A>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000437690
  ensembl transcript: ENST00000537860
  gene symbol: PTRH2
  hgvsc: ENST00000537860.1:c.-1+19A>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000464327
  ensembl transcript: ENST00000470557
  gene symbol: PTRH2
  hgvsc: ENST00000470557.2:c.-874A>G
  variant of: http://identifiers.org/hgnc/24265
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1455
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2763
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

17-57776253-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57776253
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57776253
    reference: chr 17
allele count: 1
allele frequency: 6.948304613674263e-5
allele num: 14392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000437690
  ensembl transcript: ENST00000537860
  gene symbol: PTRH2
  hgvsc: ENST00000537860.1:c.-22C>T
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000387180
  ensembl transcript: ENST00000409433
  gene symbol: PTRH2
  hgvsc: ENST00000409433.2:c.-19C>T
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000464327
  ensembl transcript: ENST00000470557
  gene symbol: PTRH2
  hgvsc: ENST00000470557.2:c.-914C>T
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl transcript: ENST00000587935
  gene symbol: PTRH2
  hgvsc: ENST00000587935.1:n.45+8479C>T
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000376758
  ensembl transcript: ENST00000393038
  gene symbol: PTRH2
  hgvsc: ENST00000393038.2:c.1-914C>T
  variant of: http://identifiers.org/hgnc/24265
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

17-57776277-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57776277
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57776277
    reference: chr 17
allele count: 2
allele frequency: 1.38561729250381e-4
allele num: 14434
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000464327
  ensembl transcript: ENST00000470557
  gene symbol: PTRH2
  hgvsc: ENST00000470557.2:c.-938C>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000387180
  ensembl transcript: ENST00000409433
  gene symbol: PTRH2
  hgvsc: ENST00000409433.2:c.-43C>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000376758
  ensembl transcript: ENST00000393038
  gene symbol: PTRH2
  hgvsc: ENST00000393038.2:c.1-938C>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000141378
  ensembl transcript: ENST00000587935
  gene symbol: PTRH2
  hgvsc: ENST00000587935.1:n.45+8455C>G
  variant of: http://identifiers.org/hgnc/24265
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000141378
  ensembl protein: ENSP00000437690
  ensembl transcript: ENST00000537860
  gene symbol: PTRH2
  hgvsc: ENST00000537860.1:c.-46C>G
  variant of: http://identifiers.org/hgnc/24265
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

17-57808757-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57808757
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57808757
    reference: chr 17
allele count: 1
allele frequency: 8.665961835104079e-6
allele num: 115394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-226-25G>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.-26-25G>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.-26-25G>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.79-25G>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-466-25G>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.-51G>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.-26-25G>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.-26-25G>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.-26-25G>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-226-25G>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.-26-25G>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.-26-25G>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.-26-25G>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-6057G>T
  variant of: http://identifiers.org/hgnc/29559
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5923
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

17-57808762-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57808762
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57808762
    reference: chr 17
allele count: 1
allele frequency: 8.642146017699115e-6
allele num: 115712
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.79-20A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-226-20A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.-26-20A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.-26-20A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.-26-20A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.-26-20A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-466-20A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.-26-20A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.-46A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.-26-20A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.-26-20A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-6052A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-226-20A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.-26-20A>G
  variant of: http://identifiers.org/hgnc/29559
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5974
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5857
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD

17-57808770-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57808770
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57808770
    reference: chr 17
allele count: 1
allele frequency: 8.615045315138358e-6
allele num: 116076
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.-26-12T>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.-26-12T>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.79-12T>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.-26-12T>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.-26-12T>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.-38T>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.-26-12T>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-226-12T>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-226-12T>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.-26-12T>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.-26-12T>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.-26-12T>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-466-12T>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-6044T>G
  variant of: http://identifiers.org/hgnc/29559
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18264
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

17-57808775-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57808775
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57808775
    reference: chr 17
allele count: 1
allele frequency: 8.601262665359275e-6
allele num: 116262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.-26-7G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.-26-7G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.-26-7G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.-33G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.-26-7G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-466-7G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.-26-7G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-226-7G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.-26-7G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.79-7G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.-26-7G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-226-7G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.-26-7G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-6039G>A
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 20005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18034
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-26-7G>A
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

17-57808777-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57808777
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57808777
    reference: chr 17
allele count: 1
allele frequency: 8.578830876928093e-6
allele num: 116566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.-26-5A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.79-5A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-6037A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-466-5A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.-26-5A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.-26-5A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.-26-5A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-226-5A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.-26-5A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-226-5A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.-26-5A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.-26-5A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.-26-5A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.-31A>T
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7244
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-26-5A>T
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

17-57808803-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57808803
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57808803
    reference: chr 17
allele count: 5
allele frequency: 4.203093476798924e-5
allele num: 118960
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-205A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.-5A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-6011A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-445A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.-5A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.-5A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.-5A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.-5A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.100A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.-5A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.-5A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.-5A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.-5A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-205A>G
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7468
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24241
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

17-57808803-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57808803
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57808803
    reference: chr 17
allele count: 3
allele frequency: 2.521856086079354e-5
allele num: 118960
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-445A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.-5A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-205A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.-5A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.-5A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.-5A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.-5A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.-5A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.-5A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.100A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-6011A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-205A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.-5A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.-5A>T
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

17-57808811-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57808811
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57808811
    reference: chr 17
allele count: 1
allele frequency: 8.379279717115517e-6
allele num: 119342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.4G>T
  hgvsp: ENSP00000465397.1:p.Ala2Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.4G>T
  hgvsp: ENSP00000465972.1:p.Ala2Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.4G>T
  hgvsp: ENSP00000466511.1:p.Ala2Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.4G>T
  hgvsp: ENSP00000465947.1:p.Ala2Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.4G>T
  hgvsp: ENSP00000262291.3:p.Ala2Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-437G>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.4G>T
  hgvsp: ENSP00000466198.2:p.Ala2Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.4G>T
  hgvsp: ENSP00000466579.1:p.Ala2Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-197G>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.108G>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.4G>T
  hgvsp: ENSP00000467093.1:p.Ala2Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-197G>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.4G>T
  hgvsp: ENSP00000446230.1:p.Ala2Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-6003G>T
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala2Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

17-57808826-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57808826
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57808826
    reference: chr 17
allele count: 1
allele frequency: 8.340561820244212e-6
allele num: 119896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.19A>T
  hgvsp: ENSP00000465972.1:p.Asn7Tyr
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.19A>T
  hgvsp: ENSP00000466579.1:p.Asn7Tyr
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.19A>T
  hgvsp: ENSP00000465397.1:p.Asn7Tyr
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.19A>T
  hgvsp: ENSP00000466198.2:p.Asn7Tyr
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.19A>T
  hgvsp: ENSP00000446230.1:p.Asn7Tyr
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.19A>T
  hgvsp: ENSP00000262291.3:p.Asn7Tyr
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.19A>T
  hgvsp: ENSP00000467093.1:p.Asn7Tyr
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.19A>T
  hgvsp: ENSP00000465947.1:p.Asn7Tyr
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-182A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.123A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-5988A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-182A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-422A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.19A>T
  hgvsp: ENSP00000466511.1:p.Asn7Tyr
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn7Tyr
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

17-57808828-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57808828
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57808828
    reference: chr 17
allele count: 1
allele frequency: 8.337502084375522e-6
allele num: 119940
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-180T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.21T>A
  hgvsp: ENSP00000465947.1:p.Asn7Lys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.21T>A
  hgvsp: ENSP00000466579.1:p.Asn7Lys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.21T>A
  hgvsp: ENSP00000262291.3:p.Asn7Lys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.21T>A
  hgvsp: ENSP00000466511.1:p.Asn7Lys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.21T>A
  hgvsp: ENSP00000466198.2:p.Asn7Lys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.21T>A
  hgvsp: ENSP00000465972.1:p.Asn7Lys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-5986T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.21T>A
  hgvsp: ENSP00000467093.1:p.Asn7Lys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-180T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.21T>A
  hgvsp: ENSP00000465397.1:p.Asn7Lys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.125T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.21T>A
  hgvsp: ENSP00000446230.1:p.Asn7Lys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-420T>A
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24684
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn7Lys
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

17-57808839-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57808839
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57808839
    reference: chr 17
allele count: 1
allele frequency: 8.329446258412741e-6
allele num: 120056
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-169G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.32G>A
  hgvsp: ENSP00000465972.1:p.Arg11Lys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.32G>A
  hgvsp: ENSP00000446230.1:p.Arg11Lys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-169G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.32G>A
  hgvsp: ENSP00000262291.3:p.Arg11Lys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.32G>A
  hgvsp: ENSP00000465397.1:p.Arg11Lys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.32G>A
  hgvsp: ENSP00000467093.1:p.Arg11Lys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-409G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.32G>A
  hgvsp: ENSP00000465947.1:p.Arg11Lys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.32G>A
  hgvsp: ENSP00000466198.2:p.Arg11Lys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-5975G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.32G>A
  hgvsp: ENSP00000466511.1:p.Arg11Lys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.136G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.32G>A
  hgvsp: ENSP00000466579.1:p.Arg11Lys
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg11Lys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum

17-57808841-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57808841
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57808841
    reference: chr 17
allele count: 3
allele frequency: 2.49912530614285e-5
allele num: 120042
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.138C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.34C>T
  hgvsp: ENSP00000465972.1:p.Arg12Cys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-5973C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.34C>T
  hgvsp: ENSP00000466511.1:p.Arg12Cys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.34C>T
  hgvsp: ENSP00000466579.1:p.Arg12Cys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.34C>T
  hgvsp: ENSP00000262291.3:p.Arg12Cys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.34C>T
  hgvsp: ENSP00000467093.1:p.Arg12Cys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.34C>T
  hgvsp: ENSP00000465397.1:p.Arg12Cys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.34C>T
  hgvsp: ENSP00000465947.1:p.Arg12Cys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-167C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-407C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-167C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.34C>T
  hgvsp: ENSP00000446230.1:p.Arg12Cys
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.34C>T
  hgvsp: ENSP00000466198.2:p.Arg12Cys
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19966
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg12Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

17-57808858-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57808858
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57808858
    reference: chr 17
allele count: 2
allele frequency: 1.669142561466175e-5
allele num: 119822
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.51G>A
  hgvsp: ENST00000587259.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.51G>A
  hgvsp: ENST00000589823.2:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.155G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.51G>A
  hgvsp: ENST00000545362.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.51G>A
  hgvsp: ENST00000585847.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.51G>A
  hgvsp: ENST00000586245.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.51G>A
  hgvsp: ENST00000262291.4:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-5956G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.51G>A
  hgvsp: ENST00000593168.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.51G>A
  hgvsp: ENST00000591315.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-150G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-150G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.51G>A
  hgvsp: ENST00000592106.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-390G>A
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys17Lys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

17-57808865-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57808865
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57808865
    reference: chr 17
allele count: 3
allele frequency: 2.508151492350138e-5
allele num: 119610
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.58C>T
  hgvsp: ENSP00000467093.1:p.His20Tyr
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.58C>T
  hgvsp: ENSP00000465972.1:p.His20Tyr
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.58C>T
  hgvsp: ENSP00000466511.1:p.His20Tyr
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.58C>T
  hgvsp: ENSP00000465397.1:p.His20Tyr
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.58C>T
  hgvsp: ENSP00000262291.3:p.His20Tyr
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.162C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-143C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.58C>T
  hgvsp: ENSP00000466198.2:p.His20Tyr
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.58C>T
  hgvsp: ENSP00000465947.1:p.His20Tyr
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.58C>T
  hgvsp: ENSP00000466579.1:p.His20Tyr
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.58C>T
  hgvsp: ENSP00000446230.1:p.His20Tyr
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-143C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-383C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-5949C>T
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7486
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His20Tyr
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP

17-57808874-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57808874
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57808874
    reference: chr 17
allele count: 1
allele frequency: 8.388558006878617e-6
allele num: 119210
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.67A>G
  hgvsp: ENSP00000446230.1:p.Asn23Asp
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.67A>G
  hgvsp: ENSP00000465972.1:p.Asn23Asp
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.67A>G
  hgvsp: ENSP00000465397.1:p.Asn23Asp
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.67A>G
  hgvsp: ENSP00000466198.2:p.Asn23Asp
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.171A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.67A>G
  hgvsp: ENSP00000467093.1:p.Asn23Asp
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-374A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-5940A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.67A>G
  hgvsp: ENSP00000262291.3:p.Asn23Asp
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.67A>G
  hgvsp: ENSP00000465947.1:p.Asn23Asp
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.67A>G
  hgvsp: ENSP00000466579.1:p.Asn23Asp
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-134A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-134A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.67A>G
  hgvsp: ENSP00000466511.1:p.Asn23Asp
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn23Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

17-57808885-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57808885
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57808884
    reference: chr 17
allele count: 1
allele frequency: 8.446802040747373e-6
allele num: 118388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-125+5delA
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.180+5delA
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-125+5delA
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.76+5delA
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-5926delA
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.76+5delA
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.76+5delA
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.76+5delA
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.76+5delA
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.76+5delA
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.76+5delA
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.76+5delA
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.76+5delA
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-365+5delA
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.76+5delA
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: TA
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

17-57808894-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57808894
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57808894
    reference: chr 17
allele count: 1
allele frequency: 8.512666848270226e-6
allele num: 117472
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.76+11A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.76+11A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.76+11A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.76+11A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.76+11A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.180+11A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-125+11A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.76+11A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.76+11A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-5920A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-125+11A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.76+11A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.76+11A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-365+11A>G
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

17-57808895-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57808895
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57808895
    reference: chr 17
allele count: 1
allele frequency: 8.520935939603607e-6
allele num: 117358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-125+12T>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-125+12T>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.76+12T>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.76+12T>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.76+12T>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.76+12T>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.180+12T>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.76+12T>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.76+12T>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.76+12T>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-5919T>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-365+12T>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.76+12T>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.76+12T>C
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

17-57808902-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57808902
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57808902
    reference: chr 17
allele count: 1
allele frequency: 8.597713008339781e-6
allele num: 116310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.76+19C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-125+19C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.76+19C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.180+19C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.76+19C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.76+19C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-365+19C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-5912C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-125+19C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.76+19C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.76+19C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.76+19C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.76+19C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.76+19C>T
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7124
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

17-57808914-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57808914
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57808914
    reference: chr 17
allele count: 1
allele frequency: 8.76577840112202e-6
allele num: 114080
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.76+31C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.180+31C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.76+31C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.76+31C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.76+31C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.76+31C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-5900C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.76+31C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.76+31C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.76+31C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.76+31C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-365+31C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-125+31C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-125+31C>T
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

17-57808916-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57808916
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57808916
    reference: chr 17
allele count: 16
allele frequency: 1.413602388988037e-4
allele num: 113186
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-125+33A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.76+33A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-125+33A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.76+33A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-5898A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.76+33A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.76+33A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.180+33A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.76+33A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.76+33A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.76+33A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.76+33A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-365+33A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.76+33A>T
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10736
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14169
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5892
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10679
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

17-57808920-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57808920
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57808920
    reference: chr 17
allele count: 1
allele frequency: 8.876107294384975e-6
allele num: 112662
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.76+37G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-5894G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.76+37G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.76+37G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.76+37G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.76+37G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-125+37G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.76+37G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.76+37G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-365+37G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-125+37G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.76+37G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.180+37G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.76+37G>A
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13812
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8917
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10748
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-57812650-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57812650
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57812650
    reference: chr 17
allele count: 1
allele frequency: 8.722958827634334e-6
allele num: 114640
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.77-49G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.181-49G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-124-49G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-124-49G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.77-49G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.77-49G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.77-2164G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.77-49G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-2164G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.77-49G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.77-49G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.77-49G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.77-49G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-364-2164G>C
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15332
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10936
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

17-57812651-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57812651
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57812651
    reference: chr 17
allele count: 2
allele frequency: 1.745657676529633e-5
allele num: 114570
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.77-48C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-124-48C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.77-48C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.77-48C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.77-48C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.77-48C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-2163C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-364-2163C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.77-2163C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.77-48C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.77-48C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.181-48C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.77-48C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-124-48C>T
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3951
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14793
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10919
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

17-57812662-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57812662
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57812662
    reference: chr 17
allele count: 1
allele frequency: 8.687493484379887e-6
allele num: 115108
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.77-37G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.77-37G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-124-37G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.77-37G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.77-37G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.77-37G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.181-37G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.77-37G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-124-37G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-2152G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.77-37G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.77-2152G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-364-2152G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.77-37G>C
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4145
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7635
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10025
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

17-57812677-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57812677
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57812677
    reference: chr 17
allele count: 31
allele frequency: 2.669330256427919e-4
allele num: 116134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.77-22T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.181-22T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-124-22T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.77-22T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-364-2137T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-2137T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.77-22T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.77-22T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-124-22T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.77-22T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.77-2137T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.77-22T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.77-22T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.77-22T>A
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28887
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10360
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5970
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

17-57812683-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57812683
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57812683
    reference: chr 17
allele count: 4
allele frequency: 3.425126729688999e-5
allele num: 116784
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.77-16C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.77-16C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-124-16C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.77-2131C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.77-16C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.77-16C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.77-16C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.77-16C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-2131C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.77-16C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-364-2131C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.77-16C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.181-16C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-124-16C>T
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-57812684-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57812684
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57812684
    reference: chr 17
allele count: 2
allele frequency: 1.709986320109439e-5
allele num: 116960
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-364-2130A>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.77-15A>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.77-15A>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-124-15A>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.77-15A>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-2130A>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.77-15A>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.77-15A>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.77-2130A>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.77-15A>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-124-15A>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.181-15A>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.77-15A>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.77-15A>C
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP

17-57812684-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57812684
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57812684
    reference: chr 17
allele count: 1
allele frequency: 8.549931600547196e-6
allele num: 116960
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.77-15A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.77-2130A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-124-15A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.77-15A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.77-15A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.77-15A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.77-15A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.181-15A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.77-15A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-2130A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-364-2130A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.77-15A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.77-15A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-124-15A>G
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

17-57812686-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57812686
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57812686
    reference: chr 17
allele count: 1
allele frequency: 8.524713143402724e-6
allele num: 117306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.77-2128T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.77-13T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.77-13T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.77-13T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-2128T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.77-13T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-124-13T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.77-13T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.181-13T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.77-13T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.77-13T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.77-13T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-364-2128T>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-124-13T>A
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

17-57812704-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57812704
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57812704
    reference: chr 17
allele count: 1
allele frequency: 8.384338056510439e-6
allele num: 119270
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.82T>C
  hgvsp: ENSP00000262291.3:p.Ser28Pro
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.82T>C
  hgvsp: ENSP00000446230.1:p.Ser28Pro
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.82T>C
  hgvsp: ENSP00000465397.1:p.Ser28Pro
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.82T>C
  hgvsp: ENSP00000465972.1:p.Ser28Pro
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.77-2110T>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465911
  ensembl transcript: ENST00000592619
  gene symbol: VMP1
  hgvsc: ENST00000592619.1:c.6T>C
  hgvsp: ENSP00000465911.1:p.Ser3Pro
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.82T>C
  hgvsp: ENSP00000465947.1:p.Ser28Pro
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.82T>C
  hgvsp: ENSP00000467093.1:p.Ser28Pro
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.186T>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-119T>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.82T>C
  hgvsp: ENSP00000466511.1:p.Ser28Pro
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-119T>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-2110T>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.82T>C
  hgvsp: ENSP00000466198.2:p.Ser28Pro
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-364-2110T>C
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser28Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-57812709-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57812709
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57812709
    reference: chr 17
allele count: 1
allele frequency: 8.352404657300837e-6
allele num: 119726
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.77-2105A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.87A>G
  hgvsp: ENST00000262291.4:c.87A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.87A>G
  hgvsp: ENST00000585847.1:c.87A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465911
  ensembl transcript: ENST00000592619
  gene symbol: VMP1
  hgvsc: ENST00000592619.1:c.11A>G
  hgvsp: ENST00000592619.1:c.11A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-364-2105A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.191A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.87A>G
  hgvsp: ENST00000587259.1:c.87A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-114A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-2105A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.87A>G
  hgvsp: ENST00000593168.1:c.87A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.87A>G
  hgvsp: ENST00000545362.1:c.87A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-114A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.87A>G
  hgvsp: ENST00000589823.2:c.87A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.87A>G
  hgvsp: ENST00000591315.1:c.87A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.87A>G
  hgvsp: ENST00000592106.1:c.87A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13534
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser29Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP

17-57812714-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57812714
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57812714
    reference: chr 17
allele count: 2
allele frequency: 1.665722757104307e-5
allele num: 120068
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-2100A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.92A>G
  hgvsp: ENSP00000465947.1:p.Asn31Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.92A>G
  hgvsp: ENSP00000465397.1:p.Asn31Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.92A>G
  hgvsp: ENSP00000446230.1:p.Asn31Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.92A>G
  hgvsp: ENSP00000467093.1:p.Asn31Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.92A>G
  hgvsp: ENSP00000262291.3:p.Asn31Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-109A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.196A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-109A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.92A>G
  hgvsp: ENSP00000466198.2:p.Asn31Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-364-2100A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.77-2100A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465911
  ensembl transcript: ENST00000592619
  gene symbol: VMP1
  hgvsc: ENST00000592619.1:c.16A>G
  hgvsp: ENSP00000465911.1:p.Asn6Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.92A>G
  hgvsp: ENSP00000466511.1:p.Asn31Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.92A>G
  hgvsp: ENSP00000465972.1:p.Asn31Ser
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asn31Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

17-57812715-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57812715
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57812715
    reference: chr 17
allele count: 1
allele frequency: 8.329168748958854e-6
allele num: 120060
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-364-2099T>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.93T>C
  hgvsp: ENST00000587259.1:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.197T>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-2099T>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.93T>C
  hgvsp: ENST00000585847.1:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.93T>C
  hgvsp: ENST00000262291.4:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465911
  ensembl transcript: ENST00000592619
  gene symbol: VMP1
  hgvsc: ENST00000592619.1:c.17T>C
  hgvsp: ENST00000592619.1:c.17T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.93T>C
  hgvsp: ENST00000591315.1:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.93T>C
  hgvsp: ENST00000589823.2:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.93T>C
  hgvsp: ENST00000592106.1:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.93T>C
  hgvsp: ENST00000545362.1:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-108T>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.93T>C
  hgvsp: ENST00000593168.1:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.77-2099T>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-108T>C
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32648
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn31Asn
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

17-57812723-AGAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57812723
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57812720
    reference: chr 17
allele count: 2
allele frequency: 1.660550306371532e-5
allele num: 120442
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.106_108delAGG
  hgvsp: ENSP00000465947.1:p.Arg36del
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.106_108delAGG
  hgvsp: ENSP00000466511.1:p.Arg36del
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.210_212delAGG
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.106_108delAGG
  hgvsp: ENSP00000467093.1:p.Arg36del
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.106_108delAGG
  hgvsp: ENSP00000465972.1:p.Arg36del
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465911
  ensembl transcript: ENST00000592619
  gene symbol: VMP1
  hgvsc: ENST00000592619.1:c.30_32delAGG
  hgvsp: ENSP00000465911.1:p.Arg11del
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-95_-93delAGG
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.106_108delAGG
  hgvsp: ENSP00000446230.1:p.Arg36del
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.106_108delAGG
  hgvsp: ENSP00000262291.3:p.Arg36del
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.77-2086_77-2084delAGG
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.106_108delAGG
  hgvsp: ENSP00000465397.1:p.Arg36del
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.106_108delAGG
  hgvsp: ENSP00000466198.2:p.Arg36del
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-364-2086_-364-2084delAGG
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-95_-93delAGG
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-2086_-364-2084delAGG
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32373
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg36del
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: AGAG
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

17-57812731-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57812731
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57812731
    reference: chr 17
allele count: 6
allele frequency: 4.973969559306297e-5
allele num: 120628
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465911
  ensembl transcript: ENST00000592619
  gene symbol: VMP1
  hgvsc: ENST00000592619.1:c.33G>C
  hgvsp: ENSP00000465911.1:p.Glu12Gln
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.109G>C
  hgvsp: ENSP00000466198.2:p.Glu37Gln
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-92G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.213G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.109G>C
  hgvsp: ENSP00000467093.1:p.Glu37Gln
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.77-2083G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.109G>C
  hgvsp: ENSP00000466511.1:p.Glu37Gln
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.109G>C
  hgvsp: ENSP00000465397.1:p.Glu37Gln
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.109G>C
  hgvsp: ENSP00000262291.3:p.Glu37Gln
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.109G>C
  hgvsp: ENSP00000446230.1:p.Glu37Gln
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-92G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.109G>C
  hgvsp: ENSP00000465947.1:p.Glu37Gln
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.109G>C
  hgvsp: ENSP00000465972.1:p.Glu37Gln
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-2083G>C
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-364-2083G>C
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31949
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6853
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu37Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

17-57812732-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57812732
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57812732
    reference: chr 17
allele count: 1
allele frequency: 8.287475966319697e-6
allele num: 120664
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.110A>G
  hgvsp: ENSP00000465972.1:p.Glu37Gly
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.110A>G
  hgvsp: ENSP00000262291.3:p.Glu37Gly
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.110A>G
  hgvsp: ENSP00000465947.1:p.Glu37Gly
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-91A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.110A>G
  hgvsp: ENSP00000446230.1:p.Glu37Gly
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.110A>G
  hgvsp: ENSP00000466511.1:p.Glu37Gly
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-364-2082A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.110A>G
  hgvsp: ENSP00000465397.1:p.Glu37Gly
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465911
  ensembl transcript: ENST00000592619
  gene symbol: VMP1
  hgvsc: ENST00000592619.1:c.34A>G
  hgvsp: ENSP00000465911.1:p.Glu12Gly
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-91A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.77-2082A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.110A>G
  hgvsp: ENSP00000467093.1:p.Glu37Gly
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.110A>G
  hgvsp: ENSP00000466198.2:p.Glu37Gly
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.214A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-2082A>G
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu37Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

17-57812732-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57812732
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57812732
    reference: chr 17
allele count: 1
allele frequency: 8.287475966319697e-6
allele num: 120664
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.110A>T
  hgvsp: ENSP00000465947.1:p.Glu37Val
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.110A>T
  hgvsp: ENSP00000262291.3:p.Glu37Val
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-91A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465911
  ensembl transcript: ENST00000592619
  gene symbol: VMP1
  hgvsc: ENST00000592619.1:c.34A>T
  hgvsp: ENSP00000465911.1:p.Glu12Val
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.110A>T
  hgvsp: ENSP00000465397.1:p.Glu37Val
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.214A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-2082A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.110A>T
  hgvsp: ENSP00000465972.1:p.Glu37Val
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.110A>T
  hgvsp: ENSP00000467093.1:p.Glu37Val
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.110A>T
  hgvsp: ENSP00000446230.1:p.Glu37Val
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.110A>T
  hgvsp: ENSP00000466198.2:p.Glu37Val
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.110A>T
  hgvsp: ENSP00000466511.1:p.Glu37Val
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.77-2082A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-91A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-364-2082A>T
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu37Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP

17-57812733-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57812733
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57812733
    reference: chr 17
allele count: 1
allele frequency: 8.284866862189524e-6
allele num: 120702
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.215G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.111G>A
  hgvsp: ENST00000591315.1:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-90G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-364-2081G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.111G>A
  hgvsp: ENST00000585847.1:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-90G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-2081G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.111G>A
  hgvsp: ENST00000593168.1:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.77-2081G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.111G>A
  hgvsp: ENST00000589823.2:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.111G>A
  hgvsp: ENST00000262291.4:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.111G>A
  hgvsp: ENST00000587259.1:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.111G>A
  hgvsp: ENST00000592106.1:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.111G>A
  hgvsp: ENST00000545362.1:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465911
  ensembl transcript: ENST00000592619
  gene symbol: VMP1
  hgvsc: ENST00000592619.1:c.35G>A
  hgvsp: ENST00000592619.1:c.35G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6926
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu37Glu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum

17-57812734-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57812734
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57812734
    reference: chr 17
allele count: 14
allele frequency: 1.159977463294999e-4
allele num: 120692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.77-2080C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.112C>T
  hgvsp: ENSP00000262291.3:p.Arg38Trp
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.112C>T
  hgvsp: ENSP00000466198.2:p.Arg38Trp
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.112C>T
  hgvsp: ENSP00000465947.1:p.Arg38Trp
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.112C>T
  hgvsp: ENSP00000465972.1:p.Arg38Trp
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-2080C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-89C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.112C>T
  hgvsp: ENSP00000465397.1:p.Arg38Trp
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465911
  ensembl transcript: ENST00000592619
  gene symbol: VMP1
  hgvsc: ENST00000592619.1:c.36C>T
  hgvsp: ENSP00000465911.1:p.Arg13Trp
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.112C>T
  hgvsp: ENSP00000446230.1:p.Arg38Trp
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.112C>T
  hgvsp: ENSP00000466511.1:p.Arg38Trp
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-364-2080C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.112C>T
  hgvsp: ENSP00000467093.1:p.Arg38Trp
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-89C>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.216C>T
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14725
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg38Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

17-57812735-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57812735
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57812735
    reference: chr 17
allele count: 12
allele frequency: 9.935419771485345e-5
allele num: 120780
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-364-2079G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.217G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.113G>A
  hgvsp: ENSP00000466511.1:p.Arg38Gln
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-88G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.113G>A
  hgvsp: ENSP00000465972.1:p.Arg38Gln
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.113G>A
  hgvsp: ENSP00000467093.1:p.Arg38Gln
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.113G>A
  hgvsp: ENSP00000262291.3:p.Arg38Gln
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.113G>A
  hgvsp: ENSP00000466198.2:p.Arg38Gln
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-2079G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.113G>A
  hgvsp: ENSP00000465397.1:p.Arg38Gln
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.77-2079G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.113G>A
  hgvsp: ENSP00000465947.1:p.Arg38Gln
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-88G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.113G>A
  hgvsp: ENSP00000446230.1:p.Arg38Gln
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465911
  ensembl transcript: ENST00000592619
  gene symbol: VMP1
  hgvsc: ENST00000592619.1:c.37G>A
  hgvsp: ENSP00000465911.1:p.Arg13Gln
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg38Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum

17-57812741-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57812741
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57812741
    reference: chr 17
allele count: 1
allele frequency: 8.27034090345204e-6
allele num: 120914
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.119A>G
  hgvsp: ENSP00000446230.1:p.Glu40Gly
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-82A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.77-2073A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.119A>G
  hgvsp: ENSP00000466198.2:p.Glu40Gly
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.119A>G
  hgvsp: ENSP00000467093.1:p.Glu40Gly
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.119A>G
  hgvsp: ENSP00000466511.1:p.Glu40Gly
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.119A>G
  hgvsp: ENSP00000465947.1:p.Glu40Gly
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.119A>G
  hgvsp: ENSP00000262291.3:p.Glu40Gly
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.119A>G
  hgvsp: ENSP00000465972.1:p.Glu40Gly
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465911
  ensembl transcript: ENST00000592619
  gene symbol: VMP1
  hgvsc: ENST00000592619.1:c.43A>G
  hgvsp: ENSP00000465911.1:p.Glu15Gly
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-364-2073A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-2073A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.119A>G
  hgvsp: ENSP00000465397.1:p.Glu40Gly
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-82A>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.223A>G
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu40Gly
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

17-57812754-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57812754
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57812754
    reference: chr 17
allele count: 1
allele frequency: 8.256002113536541e-6
allele num: 121124
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.132T>G
  hgvsp: ENSP00000465397.1:p.Ile44Met
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.132T>G
  hgvsp: ENSP00000446230.1:p.Ile44Met
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.132T>G
  hgvsp: ENSP00000466198.2:p.Ile44Met
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-69T>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-2060T>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465911
  ensembl transcript: ENST00000592619
  gene symbol: VMP1
  hgvsc: ENST00000592619.1:c.56T>G
  hgvsp: ENSP00000465911.1:p.Ile19Met
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.132T>G
  hgvsp: ENSP00000465947.1:p.Ile44Met
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.132T>G
  hgvsp: ENSP00000262291.3:p.Ile44Met
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.132T>G
  hgvsp: ENSP00000466511.1:p.Ile44Met
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-364-2060T>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.236T>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.132T>G
  hgvsp: ENSP00000465972.1:p.Ile44Met
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.132T>G
  hgvsp: ENSP00000467093.1:p.Ile44Met
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-69T>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.77-2060T>G
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7421
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile44Met
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-57812772-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57812772
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57812772
    reference: chr 17
allele count: 2
allele frequency: 1.649783878311941e-5
allele num: 121228
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-2042G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.254G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.150G>A
  hgvsp: ENST00000262291.4:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.150G>A
  hgvsp: ENST00000589823.2:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465911
  ensembl transcript: ENST00000592619
  gene symbol: VMP1
  hgvsc: ENST00000592619.1:c.74G>A
  hgvsp: ENST00000592619.1:c.74G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.150G>A
  hgvsp: ENST00000545362.1:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.150G>A
  hgvsp: ENST00000592106.1:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-364-2042G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-51G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-51G>A
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.150G>A
  hgvsp: ENST00000585847.1:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.150G>A
  hgvsp: ENST00000593168.1:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.150G>A
  hgvsp: ENST00000587259.1:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.150G>A
  hgvsp: ENST00000591315.1:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.77-2042G>A
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro50Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

17-57812779-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57812779
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57812779
    reference: chr 17
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.157A>T
  hgvsp: ENSP00000465972.1:p.Thr53Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.77-2035A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-2035A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.157A>T
  hgvsp: ENSP00000466198.2:p.Thr53Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-44A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.157A>T
  hgvsp: ENSP00000465397.1:p.Thr53Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.157A>T
  hgvsp: ENSP00000262291.3:p.Thr53Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.157A>T
  hgvsp: ENSP00000466511.1:p.Thr53Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-364-2035A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.157A>T
  hgvsp: ENSP00000467093.1:p.Thr53Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.157A>T
  hgvsp: ENSP00000465947.1:p.Thr53Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465911
  ensembl transcript: ENST00000592619
  gene symbol: VMP1
  hgvsc: ENST00000592619.1:c.81A>T
  hgvsp: ENSP00000465911.1:p.Thr28Ser
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.261A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-44A>T
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.157A>T
  hgvsp: ENSP00000446230.1:p.Thr53Ser
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30749
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr53Ser
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-57812781-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57812781
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57812781
    reference: chr 17
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000262291
  ensembl transcript: ENST00000262291
  gene symbol: VMP1
  hgvsc: ENST00000262291.4:c.159C>G
  hgvsp: ENST00000262291.4:c.159C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465972
  ensembl transcript: ENST00000593168
  gene symbol: VMP1
  hgvsc: ENST00000593168.1:c.159C>G
  hgvsp: ENST00000593168.1:c.159C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000467093
  ensembl transcript: ENST00000592106
  gene symbol: VMP1
  hgvsc: ENST00000592106.1:c.159C>G
  hgvsp: ENST00000592106.1:c.159C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465397
  ensembl transcript: ENST00000587259
  gene symbol: VMP1
  hgvsc: ENST00000587259.1:c.159C>G
  hgvsp: ENST00000587259.1:c.159C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466511
  ensembl transcript: ENST00000591315
  gene symbol: VMP1
  hgvsc: ENST00000591315.1:c.159C>G
  hgvsp: ENST00000591315.1:c.159C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466413
  ensembl transcript: ENST00000587945
  gene symbol: VMP1
  hgvsc: ENST00000587945.1:c.-364-2033C>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000062716
  ensembl transcript: ENST00000588131
  gene symbol: VMP1
  hgvsc: ENST00000588131.1:n.263C>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000446230
  ensembl transcript: ENST00000545362
  gene symbol: VMP1
  hgvsc: ENST00000545362.1:c.159C>G
  hgvsp: ENST00000545362.1:c.159C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465911
  ensembl transcript: ENST00000592619
  gene symbol: VMP1
  hgvsc: ENST00000592619.1:c.83C>G
  hgvsp: ENST00000592619.1:c.83C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000445130
  ensembl transcript: ENST00000537567
  gene symbol: VMP1
  hgvsc: ENST00000537567.1:c.-42C>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000444969
  ensembl transcript: ENST00000536180
  gene symbol: VMP1
  hgvsc: ENST00000536180.1:c.-42C>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466579
  ensembl transcript: ENST00000586245
  gene symbol: VMP1
  hgvsc: ENST00000586245.1:c.77-2033C>G
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000465947
  ensembl transcript: ENST00000585847
  gene symbol: VMP1
  hgvsc: ENST00000585847.1:c.159C>G
  hgvsp: ENST00000585847.1:c.159C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000466198
  ensembl transcript: ENST00000589823
  gene symbol: VMP1
  hgvsc: ENST00000589823.2:c.159C>G
  hgvsp: ENST00000589823.2:c.159C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000062716
  ensembl protein: ENSP00000439959
  ensembl transcript: ENST00000539763
  gene symbol: VMP1
  hgvsc: ENST00000539763.1:c.-364-2033C>G
  variant of: http://identifiers.org/hgnc/29559
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30735
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr53Thr
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 898
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47088
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1515
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.765625000000001e-5
allele num: 10240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65990
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.298e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.239e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.79e-1

DP
type: SiteQuality
SIO_000300: 1.584098e6

MQRankSum
type: SiteQuality
SIO_000300: 1.8e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.13e1

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1517
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515748628247491e-5
allele num: 65974
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

FS
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -2.718e0

MQRankSum
type: SiteQuality
SIO_000300: 2.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.742e0

DP
type: SiteQuality
SIO_000300: 1.582925e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.320000000000001e-1

QD
type: SiteQuality
SIO_000300: 3.59e0

GenotypeQuality
all individuals: 243
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1423
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6735
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517450682852807e-5
allele num: 65900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.39e0

FS
type: SiteQuality
SIO_000300: 1.819e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.7e-1

QD
type: SiteQuality
SIO_000300: 1.052e1

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-2

DP
type: SiteQuality
SIO_000300: 1.579219e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.4e-2

GenotypeQuality
all individuals: 392
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6330
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44574
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16126
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536287101333497e-5
allele num: 65092
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.4414e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

MQRankSum
type: SiteQuality
SIO_000300: 1.84e0

MQ
type: SiteQuality
SIO_000300: 5.828e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.436e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.539538e6

VQSLOD
type: SiteQuality
SIO_000300: -4.001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.811e0

GenotypeQuality
all individuals: 225
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1135
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5646
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10934
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56631789988096e-5
allele num: 63844
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8288
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.913e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.331e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.742e0

FS
type: SiteQuality
SIO_000300: 1.47e0

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

QD
type: SiteQuality
SIO_000300: 6.96e0

MQ
type: SiteQuality
SIO_000300: 5.458e1

DP
type: SiteQuality
SIO_000300: 1.466928e6

GenotypeQuality
all individuals: 266
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6978
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1682
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 9.75e1
variant carriers: 4

South Asian
type: Population
allele count: 1
allele frequency: 6.490977541217708e-5
allele num: 15406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.72455825380327e-5
allele num: 63498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e-1

DP
type: SiteQuality
SIO_000300: 1.438115e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e-1

FS
type: SiteQuality
SIO_000300: 5.48e0

QD
type: SiteQuality
SIO_000300: 1.404e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

GenotypeQuality
all individuals: 886
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
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variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.219988936013277e-5
allele num: 10846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.152286984207042e-5
allele num: 63446
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.435872e6

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.95e-1

FS
type: SiteQuality
SIO_000300: 4.395e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.53e-1

QD
type: SiteQuality
SIO_000300: 9.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e0

GenotypeQuality
all individuals: 38351
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
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variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.578731331502005e-5
allele num: 63342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.028e0

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.278e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.8e-1

DP
type: SiteQuality
SIO_000300: 1.42745e6

GenotypeQuality
all individuals: 958
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 511
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variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8066
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62602
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.206498503634032e-4
allele num: 9356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

FS
type: SiteQuality
SIO_000300: 6.492e0

DP
type: SiteQuality
SIO_000300: 1.36022e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.843e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.4e-2

QD
type: SiteQuality
SIO_000300: 1.46e1

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 880
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 414
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variant carriers: 0

GenotypeQuality
all individuals: 363
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8066
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.068832834544677e-4
allele num: 9356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.69e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.4e-2

DP
type: SiteQuality
SIO_000300: 1.36022e6

FS
type: SiteQuality
SIO_000300: 6.492e0

VQSLOD
type: SiteQuality
SIO_000300: -1.843e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

QD
type: SiteQuality
SIO_000300: 1.46e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

GenotypeQuality
all individuals: 387
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 577
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variant carriers: 0

GenotypeQuality
all individuals: 407
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variant carriers: 0

GenotypeQuality
all individuals: 216
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variant carriers: 0

GenotypeQuality
all individuals: 30315
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62230
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.702412868632708e-5
allele num: 14920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8006
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

DP
type: SiteQuality
SIO_000300: 1.315782e6

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 2.318e0

QD
type: SiteQuality
SIO_000300: 1.643e1

MQ
type: SiteQuality
SIO_000300: 5.671e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.839e0

GenotypeQuality
all individuals: 215
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
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variant carriers: 0

GenotypeQuality
all individuals: 837
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variant carriers: 0

GenotypeQuality
all individuals: 26987
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variant carriers: 0

GenotypeQuality
all individuals: 877
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variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.089799476896251e-4
allele num: 9176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7932
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.15e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

DP
type: SiteQuality
SIO_000300: 1.261504e6

MQRankSum
type: SiteQuality
SIO_000300: -1.487e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.64e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

VQSLOD
type: SiteQuality
SIO_000300: -6.721e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e-1

GenotypeQuality
all individuals: 806
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 875
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variant carriers: 1

GenotypeQuality
all individuals: 970
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variant carriers: 0

GenotypeQuality
all individuals: 216
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GenotypeQuality
all individuals: 342
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.629142093773419e-5
allele num: 61382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.909e0

MQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.91e-1

DP
type: SiteQuality
SIO_000300: 1.200933e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.36e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.161e1

VQSLOD
type: SiteQuality
SIO_000300: 8.25e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 873
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8758
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6142
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14010
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.663672056964131e-5
allele num: 60108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.14e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.441e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.098354e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.06e-1

QD
type: SiteQuality
SIO_000300: 7.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
all individuals: 166
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14008
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.144164759725401e-4
allele num: 8740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.004337092146527e-5
allele num: 59948
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6122
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.162e1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.084777e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 1.606e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.95e-1

GenotypeQuality
all individuals: 870
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5861
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variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6018
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.701143168209037e-5
allele num: 58784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

DP
type: SiteQuality
SIO_000300: 1.020794e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.727e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.096e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.93e-1

QD
type: SiteQuality
SIO_000300: 1.385e1

GenotypeQuality
all individuals: 275
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variant carriers: 0

GenotypeQuality
all individuals: 163
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GenotypeQuality
all individuals: 870
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GenotypeQuality
all individuals: 968
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2854
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9676
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.18427285646613e-4
allele num: 8444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7486
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.479e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.93e-1

DP
type: SiteQuality
SIO_000300: 1.011468e6

VQSLOD
type: SiteQuality
SIO_000300: 9.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

GenotypeQuality
all individuals: 5163
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 203
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5898
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.327024511324853e-4
allele num: 12892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.746724890829694e-5
allele num: 57250
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.4e0

MQRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.691e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

FS
type: SiteQuality
SIO_000300: 3.638e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

DP
type: SiteQuality
SIO_000300: 9.95361e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.584e-1

GenotypeQuality
all individuals: 227
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.320306311064167e-4
allele num: 7574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.74e-1

DP
type: SiteQuality
SIO_000300: 1.91448e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.1e-1

MQ
type: SiteQuality
SIO_000300: 5.873e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e0

QD
type: SiteQuality
SIO_000300: 1.657e1

FS
type: SiteQuality
SIO_000300: 3.724e0

VQSLOD
type: SiteQuality
SIO_000300: -1.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.04e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 508
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variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4822
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 6.580679126085812e-4
allele num: 7598
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.57e-2

QD
type: SiteQuality
SIO_000300: 1.353e1

FS
type: SiteQuality
SIO_000300: 2.217e0

MQRankSum
type: SiteQuality
SIO_000300: 2.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.61e-1

DP
type: SiteQuality
SIO_000300: 2.00106e5

GenotypeQuality
all individuals: 477
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.007226013649137e-4
allele num: 4982
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.767e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.19e-1

FS
type: SiteQuality
SIO_000300: 5.305e0

MQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

QD
type: SiteQuality
SIO_000300: 9.699999999999999e0

DP
type: SiteQuality
SIO_000300: 2.06437e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.697e0

GenotypeQuality
all individuals: 947
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 481
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variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4994
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7622
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.262443438914027e-3
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.89e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.76e-1

DP
type: SiteQuality
SIO_000300: 2.05891e5

MQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.6e-2

QD
type: SiteQuality
SIO_000300: 9.75e0

MQ
type: SiteQuality
SIO_000300: 5.89e1

GenotypeDepth
all individuals: 151
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 333
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 416
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variant carriers: 0

GenotypeDepth
all individuals: 12776
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 205
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variant carriers: 1

GenotypeQuality
all individuals: 711
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 6220
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GenotypeQuality
all individuals: 1331
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.591951095262354e-5
allele num: 62816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9816
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.76e-1

DP
type: SiteQuality
SIO_000300: 1.651493e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.21e0

QD
type: SiteQuality
SIO_000300: 1.331e1

FS
type: SiteQuality
SIO_000300: 7.032e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.656e0

VQSLOD
type: SiteQuality
SIO_000300: -5.179e-1

MQ
type: SiteQuality
SIO_000300: 5.908e1

GenotypeDepth
all individuals: 137
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2133
bin: 3.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 16961
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variant carriers: 0

GenotypeDepth
all individuals: 266
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GenotypeDepth
all individuals: 185
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GenotypeQuality
all individuals: 1333
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variant carriers: 0

GenotypeQuality
all individuals: 1490
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 2018
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 677
bin: 9.25e1
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GenotypeQuality
all individuals: 522
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.587251198374655e-5
allele num: 63002
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8184
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.004e0

MQRankSum
type: SiteQuality
SIO_000300: -1.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-1

MQ
type: SiteQuality
SIO_000300: 5.863e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

DP
type: SiteQuality
SIO_000300: 1.664208e6

QD
type: SiteQuality
SIO_000300: 3.424e1

GenotypeDepth
all individuals: 266
bin: 6.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
all individuals: 1058
bin: 9.75e1
variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
all individuals: 2003
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2180
bin: 3.25e1
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GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.581827960391028e-5
allele num: 63218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.43e0

DP
type: SiteQuality
SIO_000300: 1.690231e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.78e-1

InbreedingCoeff
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SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

VQSLOD
type: SiteQuality
SIO_000300: 2.3e-2

QD
type: SiteQuality
SIO_000300: 1.388e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.7e-2

GenotypeDepth
all individuals: 1069
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
all individuals: 151
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GenotypeDepth
all individuals: 716
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GenotypeDepth
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GenotypeDepth
all individuals: 137
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GenotypeDepth
all individuals: 118
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GenotypeDepth
all individuals: 333
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1058
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.579479403588577e-5
allele num: 63312
num of homozygotes: 0

African
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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FS
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VQSLOD
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DP
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MQ
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 63484
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Other
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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DP
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MQRankSum
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ReadPosRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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Other
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East Asian
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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DP
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InbreedingCoeff
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FS
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MQ
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 64926
num of homozygotes: 0

South Asian
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East Asian
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allele num: 8516
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Other
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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African
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MQ
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VQSLOD
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DP
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ClippingRankSum
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FS
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QD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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European (Finnish)
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Latino
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East Asian
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South Asian
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MQ
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FS
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VQSLOD
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DP
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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African
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European (Finnish)
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Other
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East Asian
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European (Non-Finnish)
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MQ
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FS
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BaseQRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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QD
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Latino
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European (Finnish)
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Other
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European (Non-Finnish)
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FS
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VQSLOD
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MQRankSum
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QD
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DP
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Latino
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African
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European (Non-Finnish)
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Other
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VQSLOD
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FS
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ReadPosRankSum
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MQ
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QD
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ClippingRankSum
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DP
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InbreedingCoeff
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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Latino
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African
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East Asian
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South Asian
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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QD
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FS
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MQRankSum
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MQ
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ClippingRankSum
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DP
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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African
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East Asian
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South Asian
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European (Finnish)
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQ
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MQRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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Latino
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European (Finnish)
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African
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South Asian
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VQSLOD
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InbreedingCoeff
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QD
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MQRankSum
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MQ
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FS
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DP
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South Asian
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MQ
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MQRankSum
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VQSLOD
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Latino
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African
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South Asian
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East Asian
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European (Non-Finnish)
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DP
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FS
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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European (Non-Finnish)
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East Asian
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African
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QD
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ClippingRankSum
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DP
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InbreedingCoeff
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FS
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MQ
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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South Asian
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African
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East Asian
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European (Finnish)
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MQRankSum
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DP
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QD
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ReadPosRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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MQ
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Other
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European (Non-Finnish)
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Latino
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East Asian
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MQ
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ReadPosRankSum
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InbreedingCoeff
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DP
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FS
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VQSLOD
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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East Asian
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African
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ReadPosRankSum
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QD
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MQRankSum
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FS
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DP
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MQ
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InbreedingCoeff
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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African
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Latino
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DP
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QD
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VQSLOD
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ReadPosRankSum
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MQ
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European (Finnish)
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African
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East Asian
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European (Non-Finnish)
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MQ
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VQSLOD
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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East Asian
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Other
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European (Non-Finnish)
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South Asian
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DP
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InbreedingCoeff
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VQSLOD
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MQ
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BaseQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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Other
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South Asian
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East Asian
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MQ
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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FS
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QD
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ClippingRankSum
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DP
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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East Asian
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South Asian
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African
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Latino
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European (Non-Finnish)
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ClippingRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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FS
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MQRankSum
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DP
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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East Asian
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European (Finnish)
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African
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Latino
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South Asian
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
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InbreedingCoeff
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QD
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VQSLOD
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BaseQRankSum
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MQ
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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African
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South Asian
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Other
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European (Non-Finnish)
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East Asian
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InbreedingCoeff
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FS
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BaseQRankSum
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MQ
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DP
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MQRankSum
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QD
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Latino
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East Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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MQ
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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FS
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VQSLOD
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InbreedingCoeff
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MQRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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VQSLOD
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DP
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BaseQRankSum
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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Other
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African
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allele frequency: 0.0e0
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East Asian
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Latino
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European (Finnish)
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num of homozygotes: 0

MQ
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DP
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QD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

African
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Latino
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South Asian
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Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.529800514012973e-5
allele num: 65368
num of homozygotes: 0

DP
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ClippingRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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FS
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QD
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MQ
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SIO_000300: 5.879e1

BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Latino
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allele num: 11404
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Other
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African
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European (Finnish)
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South Asian
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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QD
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MQ
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Latino
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Other
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African
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European (Non-Finnish)
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European (Finnish)
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VQSLOD
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MQRankSum
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QD
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FS
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BaseQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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East Asian
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Latino
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MQRankSum
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DP
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VQSLOD
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FS
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QD
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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QD
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ClippingRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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South Asian
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European (Non-Finnish)
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African
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Other
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BaseQRankSum
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InbreedingCoeff
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QD
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VQSLOD
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FS
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MQRankSum
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MQ
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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East Asian
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Other
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FS
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QD
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ClippingRankSum
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BaseQRankSum
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DP
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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Other
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VQSLOD
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MQ
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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FS
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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European (Finnish)
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African
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Latino
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East Asian
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DP
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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South Asian
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European (Finnish)
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East Asian
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African
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MQ
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VQSLOD
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QD
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MQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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ReadPosRankSum
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DP
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 12

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166861143523921e-4
allele num: 8570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.565217391304348e-4
allele num: 11500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 1.625487e6

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

QD
type: SiteQuality
SIO_000300: 1.248e1

FS
type: SiteQuality
SIO_000300: 3.593e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

MQRankSum
type: SiteQuality
SIO_000300: 4.32e-1

GenotypeDepth
all individuals: 375
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 566
bin: 5.25e1
variant carriers: 0

GenotypeDepth
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bin: 7.25e1
variant carriers: 0

GenotypeDepth
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bin: 9.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 1.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 34594
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4062
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2687
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166861143523921e-4
allele num: 8570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

MQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

DP
type: SiteQuality
SIO_000300: 1.631227e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.066e0

QD
type: SiteQuality
SIO_000300: 9.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 117
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31192
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variant carriers: 0

GenotypeDepth
all individuals: 70
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 1365
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 37
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variant carriers: 0

GenotypeDepth
all individuals: 194
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variant carriers: 0

GenotypeDepth
all individuals: 2557
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variant carriers: 0

GenotypeDepth
all individuals: 15159
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variant carriers: 0

GenotypeDepth
all individuals: 103
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variant carriers: 0

GenotypeQuality
all individuals: 61
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1143
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
all individuals: 96
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variant carriers: 0

GenotypeQuality
all individuals: 3280
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 185
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variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
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variant carriers: 0

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
all individuals: 8010
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 2724
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variant carriers: 0

GenotypeQuality
all individuals: 34644
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.673026886383348e-5
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.63711e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

VQSLOD
type: SiteQuality
SIO_000300: 6.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.126e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

GenotypeDepth
all individuals: 58
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30740
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variant carriers: 0

GenotypeDepth
all individuals: 2624
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 37
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variant carriers: 0

GenotypeDepth
all individuals: 73
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variant carriers: 0

GenotypeDepth
all individuals: 7680
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variant carriers: 0

GenotypeDepth
all individuals: 70
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variant carriers: 0

GenotypeDepth
all individuals: 117
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variant carriers: 0

GenotypeDepth
all individuals: 846
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variant carriers: 0

GenotypeDepth
all individuals: 570
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variant carriers: 0

GenotypeDepth
all individuals: 100
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variant carriers: 0

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 1332
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variant carriers: 0

GenotypeQuality
all individuals: 105
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 8123
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variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 66
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 34665
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3327
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variant carriers: 0

GenotypeQuality
all individuals: 61
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variant carriers: 0

GenotypeQuality
all individuals: 38
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2761
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variant carriers: 0

GenotypeQuality
all individuals: 4700
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500240038406145e-5
allele num: 66656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.645428e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.75e-1

MQ
type: SiteQuality
SIO_000300: 5.896e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.862e-1

FS
type: SiteQuality
SIO_000300: 6.014e0

QD
type: SiteQuality
SIO_000300: 1.08e1

GenotypeDepth
all individuals: 2622
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15514
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 70
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variant carriers: 0

GenotypeDepth
all individuals: 4
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variant carriers: 0

GenotypeDepth
all individuals: 117
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GenotypeDepth
all individuals: 21
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GenotypeDepth
all individuals: 236
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variant carriers: 1

GenotypeDepth
all individuals: 37
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GenotypeDepth
all individuals: 1395
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variant carriers: 0

GenotypeDepth
all individuals: 103
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GenotypeDepth
all individuals: 141
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 77
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GenotypeQuality
all individuals: 24
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4701
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.373e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.8e-1

DP
type: SiteQuality
SIO_000300: 1.64598e6

MQ
type: SiteQuality
SIO_000300: 5.935e1

MQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

QD
type: SiteQuality
SIO_000300: 1.017e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.92e-1