11-72404464-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404464
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404464
    reference: chr 11
allele count: 1
allele frequency: 8.263643275047103e-6
allele num: 121012
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3860G>A
  hgvsp: ENSP00000377233.3:p.Arg1287His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4525G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3125G>A
  hgvsp: ENSP00000392264.1:p.Arg1042His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.263G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3860G>A
  hgvsp: ENSP00000390461.2:p.Arg1287His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.227G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2942G>A
  hgvsp: ENSP00000403127.1:p.Arg981His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3140G>A
  hgvsp: ENSP00000377230.3:p.Arg1047His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.272G>A
  hgvsp: ENSP00000441741.1:p.Arg91His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3860G>A
  hgvsp: ENSP00000352332.5:p.Arg1287His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-349C>T
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1703G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3125G>A
  hgvsp: ENSP00000335506.8:p.Arg1042His
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1287His
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff

11-72404465-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404465
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404465
    reference: chr 11
allele count: 1
allele frequency: 8.263370132874991e-6
allele num: 121016
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-348G>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1702C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.226C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2941C>T
  hgvsp: ENSP00000403127.1:p.Arg981Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4524C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3859C>T
  hgvsp: ENSP00000377233.3:p.Arg1287Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3859C>T
  hgvsp: ENSP00000352332.5:p.Arg1287Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3139C>T
  hgvsp: ENSP00000377230.3:p.Arg1047Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3124C>T
  hgvsp: ENSP00000392264.1:p.Arg1042Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3124C>T
  hgvsp: ENSP00000335506.8:p.Arg1042Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3859C>T
  hgvsp: ENSP00000390461.2:p.Arg1287Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.271C>T
  hgvsp: ENSP00000441741.1:p.Arg91Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.262C>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1287Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/11-72404473-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404473
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404473
    reference: chr 11
allele count: 1
allele frequency: 8.266649031148734e-6
allele num: 120968
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3116G>T
  hgvsp: ENSP00000392264.1:p.Arg1039Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.218G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4516G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3851G>T
  hgvsp: ENSP00000390461.2:p.Arg1284Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3851G>T
  hgvsp: ENSP00000352332.5:p.Arg1284Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-340C>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3116G>T
  hgvsp: ENSP00000335506.8:p.Arg1039Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1694G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.254G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3851G>T
  hgvsp: ENSP00000377233.3:p.Arg1284Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3131G>T
  hgvsp: ENSP00000377230.3:p.Arg1044Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.263G>T
  hgvsp: ENSP00000441741.1:p.Arg88Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2933G>T
  hgvsp: ENSP00000403127.1:p.Arg978Leu
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg1284Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

11-72404473-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404473
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404473
    reference: chr 11
allele count: 3
allele frequency: 2.47999470934462e-5
allele num: 120968
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4516G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3116G>A
  hgvsp: ENSP00000392264.1:p.Arg1039His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3851G>A
  hgvsp: ENSP00000390461.2:p.Arg1284His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3851G>A
  hgvsp: ENSP00000352332.5:p.Arg1284His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.263G>A
  hgvsp: ENSP00000441741.1:p.Arg88His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3851G>A
  hgvsp: ENSP00000377233.3:p.Arg1284His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-340C>T
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.254G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3116G>A
  hgvsp: ENSP00000335506.8:p.Arg1039His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2933G>A
  hgvsp: ENSP00000403127.1:p.Arg978His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1694G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3131G>A
  hgvsp: ENSP00000377230.3:p.Arg1044His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.218G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1284His
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

11-72404474-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404474
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404474
    reference: chr 11
allele count: 1
allele frequency: 8.266785708380868e-6
allele num: 120966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3850C>T
  hgvsp: ENSP00000390461.2:p.Arg1284Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1693C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3115C>T
  hgvsp: ENSP00000335506.8:p.Arg1039Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2932C>T
  hgvsp: ENSP00000403127.1:p.Arg978Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3115C>T
  hgvsp: ENSP00000392264.1:p.Arg1039Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3850C>T
  hgvsp: ENSP00000377233.3:p.Arg1284Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.262C>T
  hgvsp: ENSP00000441741.1:p.Arg88Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.253C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4515C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.217C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3850C>T
  hgvsp: ENSP00000352332.5:p.Arg1284Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3130C>T
  hgvsp: ENSP00000377230.3:p.Arg1044Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-339G>A
  variant of: http://identifiers.org/hgnc/39993
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1284Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

11-72404479-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404479
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404479
    reference: chr 11
allele count: 1
allele frequency: 8.27034090345204e-6
allele num: 120914
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1688A>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.257A>T
  hgvsp: ENSP00000441741.1:p.Lys86Met
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3125A>T
  hgvsp: ENSP00000377230.3:p.Lys1042Met
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.212A>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3110A>T
  hgvsp: ENSP00000335506.8:p.Lys1037Met
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3845A>T
  hgvsp: ENSP00000390461.2:p.Lys1282Met
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3845A>T
  hgvsp: ENSP00000352332.5:p.Lys1282Met
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3110A>T
  hgvsp: ENSP00000392264.1:p.Lys1037Met
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-334T>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.248A>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4510A>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3845A>T
  hgvsp: ENSP00000377233.3:p.Lys1282Met
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2927A>T
  hgvsp: ENSP00000403127.1:p.Lys976Met
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys1282Met
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/11-72404504-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404504
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404504
    reference: chr 11
allele count: 1
allele frequency: 8.342927700188551e-6
allele num: 119862
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-309C>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.232G>T
  hgvsp: ENSP00000441741.1:p.Gly78Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.187G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3820G>T
  hgvsp: ENSP00000377233.3:p.Gly1274Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3820G>T
  hgvsp: ENSP00000352332.5:p.Gly1274Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3100G>T
  hgvsp: ENSP00000377230.3:p.Gly1034Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3085G>T
  hgvsp: ENSP00000335506.8:p.Gly1029Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3085G>T
  hgvsp: ENSP00000392264.1:p.Gly1029Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3820G>T
  hgvsp: ENSP00000390461.2:p.Gly1274Cys
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1663G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4485G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.223G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2902G>T
  hgvsp: ENSP00000403127.1:p.Gly968Cys
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7738
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7633
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly1274Cys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

11-72404504-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404504
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404504
    reference: chr 11
allele count: 9
allele frequency: 7.508634930169695e-5
allele num: 119862
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3820G>A
  hgvsp: ENSP00000377233.3:p.Gly1274Ser
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-309C>T
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3085G>A
  hgvsp: ENSP00000335506.8:p.Gly1029Ser
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3820G>A
  hgvsp: ENSP00000390461.2:p.Gly1274Ser
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1663G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3085G>A
  hgvsp: ENSP00000392264.1:p.Gly1029Ser
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2902G>A
  hgvsp: ENSP00000403127.1:p.Gly968Ser
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.187G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3820G>A
  hgvsp: ENSP00000352332.5:p.Gly1274Ser
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.223G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.232G>A
  hgvsp: ENSP00000441741.1:p.Gly78Ser
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3100G>A
  hgvsp: ENSP00000377230.3:p.Gly1034Ser
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4485G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7738
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7633
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7128
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6769
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly1274Ser
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-72404505-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404505
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404505
    reference: chr 11
allele count: 4
allele frequency: 3.339846033097874e-5
allele num: 119766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.186C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3819C>T
  hgvsp: ENST00000393609.3:c.3819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3099C>T
  hgvsp: ENST00000393605.3:c.3099C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2901C>T
  hgvsp: ENST00000429686.1:c.2901C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1662C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3819C>T
  hgvsp: ENST00000455638.2:c.3819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3084C>T
  hgvsp: ENST00000426523.1:c.3084C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4484C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3819C>T
  hgvsp: ENST00000359373.5:c.3819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3084C>T
  hgvsp: ENST00000334211.8:c.3084C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.231C>T
  hgvsp: ENST00000542596.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.222C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-308G>A
  variant of: http://identifiers.org/hgnc/39993
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7741
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3764
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val1273Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

11-72404509-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404509
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404509
    reference: chr 11
allele count: 2
allele frequency: 1.672296732332185e-5
allele num: 119596
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1658G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3815G>A
  hgvsp: ENSP00000352332.5:p.Arg1272His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4480G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.227G>A
  hgvsp: ENSP00000441741.1:p.Arg76His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3080G>A
  hgvsp: ENSP00000335506.8:p.Arg1027His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.218G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3815G>A
  hgvsp: ENSP00000377233.3:p.Arg1272His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3815G>A
  hgvsp: ENSP00000390461.2:p.Arg1272His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.182G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3095G>A
  hgvsp: ENSP00000377230.3:p.Arg1032His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2897G>A
  hgvsp: ENSP00000403127.1:p.Arg966His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-304C>T
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3080G>A
  hgvsp: ENSP00000392264.1:p.Arg1027His
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1272His
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-72404518-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404518
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404518
    reference: chr 11
allele count: 2
allele frequency: 1.681746325384279e-5
allele num: 118924
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1652-3C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3809-3C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3074-3C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3809-3C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.221-3C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3809-3C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2891-3C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.212-3C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3074-3C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.176-3C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-295G>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3089-3C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4474-3C>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6986
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7597
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.3809-3C>T
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

11-72404520-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404520
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404520
    reference: chr 11
allele count: 1
allele frequency: 8.401243384020834e-6
allele num: 119030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3809-5C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3074-5C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.176-5C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-293G>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3809-5C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4474-5C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1652-5C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.221-5C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.212-5C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2891-5C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3074-5C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3089-5C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3809-5C>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7723
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5347
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.3809-5C>T
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

11-72404524-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404524
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404524
    reference: chr 11
allele count: 1
allele frequency: 8.423890152472412e-6
allele num: 118710
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-289T>G
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1652-9A>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3074-9A>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3809-9A>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2891-9A>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.176-9A>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3089-9A>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3809-9A>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4474-9A>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3074-9A>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.221-9A>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3809-9A>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.212-9A>C
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4781
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6950
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

11-72404525-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404525
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404525
    reference: chr 11
allele count: 1
allele frequency: 8.422754914677492e-6
allele num: 118726
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3809-10C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.212-10C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.176-10C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-288G>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.221-10C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2891-10C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3809-10C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1652-10C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3074-10C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3074-10C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3809-10C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4474-10C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3089-10C>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

11-72404526-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404526
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404526
    reference: chr 11
allele count: 1
allele frequency: 8.43127666391245e-6
allele num: 118606
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.221-11C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3089-11C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-287G>C
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1652-11C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3809-11C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2891-11C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.212-11C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3074-11C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3074-11C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3809-11C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.176-11C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4474-11C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3809-11C>G
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/11-72404529-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404529
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404529
    reference: chr 11
allele count: 3
allele frequency: 2.532885294067983e-5
allele num: 118442
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3809-14G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3809-14G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-284C>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4474-14G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3074-14G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2891-14G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3074-14G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3809-14G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.176-14G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.221-14G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1652-14G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.212-14G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3089-14G>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

11-72404530-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404530
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404530
    reference: chr 11
allele count: 9
allele frequency: 7.597244732576986e-5
allele num: 118464
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.221-15A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2891-15A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3074-15A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.176-15A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3074-15A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.212-15A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3089-15A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3809-15A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3809-15A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1652-15A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-283T>C
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3809-15A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4474-15A>G
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7720
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6916
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

11-72404537-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404537
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404537
    reference: chr 11
allele count: 1
allele frequency: 8.469838903664053e-6
allele num: 118066
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4474-22C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.221-22C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-276G>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3089-22C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3809-22C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3809-22C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2891-22C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.212-22C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3074-22C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3809-22C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.176-22C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1652-22C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3074-22C>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7720
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-72404541-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404541
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404541
    reference: chr 11
allele count: 1
allele frequency: 8.504558443325623e-6
allele num: 117584
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4474-26G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3074-26G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.221-26G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3809-26G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1652-26G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.212-26G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3089-26G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3809-26G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.176-26G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-272C>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3074-26G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2891-26G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3809-26G>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7586
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

11-72404543-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404543
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404543
    reference: chr 11
allele count: 3
allele frequency: 2.549762872052899e-5
allele num: 117658
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2891-28C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3809-28C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1652-28C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-270G>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3074-28C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3809-28C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.176-28C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3809-28C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4474-28C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3074-28C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.212-28C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.221-28C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3089-28C>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6834
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum

11-72404545-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404545
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404545
    reference: chr 11
allele count: 1
allele frequency: 8.524858487349111e-6
allele num: 117304
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2891-30G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3809-30G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.221-30G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4474-30G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.176-30G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3074-30G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3809-30G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1652-30G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.212-30G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3809-30G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-268C>G
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3074-30G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3089-30G>C
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7720
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

11-72404548-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404548
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404548
    reference: chr 11
allele count: 1
allele frequency: 8.539272112445135e-6
allele num: 117106
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3809-33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.221-33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4474-33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3074-33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3089-33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3074-33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2891-33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3809-33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-265C>T
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.212-33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3809-33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1652-33G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.176-33G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5075
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7718
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/11-72404554-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404554
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404554
    reference: chr 11
allele count: 1
allele frequency: 8.606740799394086e-6
allele num: 116188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3809-39G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4474-39G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2891-39G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3809-39G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3074-39G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3809-39G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3089-39G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-259C>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3074-39G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1652-39G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.221-39G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.176-39G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.212-39G>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

11-72404560-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404560
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404560
    reference: chr 11
allele count: 1
allele frequency: 8.659658116697553e-6
allele num: 115478
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3074-45G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.176-45G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.212-45G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2891-45G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-253C>T
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3089-45G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3074-45G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.221-45G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3809-45G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3809-45G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3809-45G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1652-45G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4474-45G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6900
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7718
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

11-72404562-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404562
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404562
    reference: chr 11
allele count: 5
allele frequency: 4.341408352869671e-5
allele num: 115170
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3074-47G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3074-47G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3809-47G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3809-47G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-251C>T
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.221-47G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1652-47G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4474-47G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2891-47G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3809-47G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.176-47G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.212-47G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3089-47G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7716
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum

11-72404563-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404563
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404563
    reference: chr 11
allele count: 41
allele frequency: 3.559398548459909e-4
allele num: 115188
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-250G>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3074-48C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.221-48C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2891-48C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3074-48C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.176-48C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3809-48C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.212-48C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3809-48C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3809-48C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1652-48C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4474-48C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3089-48C>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6511
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 7704
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7501
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

11-72404690-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404690
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404690
    reference: chr 11
allele count: 1
allele frequency: 2.091700133868808e-5
allele num: 47808
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3808+47C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3808+47C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4473+47C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2890+47C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3073+47C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3073+47C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.220+47C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3808+47C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-123G>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3088+47C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1651+47C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.175+47C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.211+47C>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9226
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26798
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15350
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

11-72404692-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404692
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404692
    reference: chr 11
allele count: 1
allele frequency: 2.107126301150491e-5
allele num: 47458
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3808+45T>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.220+45T>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3073+45T>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-121A>T
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.211+45T>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1651+45T>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3073+45T>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3088+45T>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.175+45T>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4473+45T>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3808+45T>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3808+45T>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2890+45T>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26953
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP

11-72404695-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404695
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404695
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 47390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.220+42C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3808+42C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3808+42C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2890+42C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3073+42C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4473+42C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1651+42C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.175+42C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.211+42C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-118G>C
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3073+42C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3088+42C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3808+42C>G
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27047
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/11-72404702-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404702
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404701
    reference: chr 11
allele count: 3
allele frequency: 6.390048564369089e-5
allele num: 46948
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.220+34delG
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4473+34delG
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.211+34delG
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-108delC
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2890+34delG
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3073+34delG
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3808+34delG
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3073+34delG
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.175+34delG
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1651+34delG
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3088+34delG
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3808+34delG
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3808+34delG
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8777
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14870
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27617
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: AC
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

11-72404705-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404705
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404705
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 46648
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.211+32G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3808+32G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1651+32G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3808+32G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.220+32G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2890+32G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.175+32G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3073+32G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3088+32G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-108C>G
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3808+32G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4473+32G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3073+32G>C
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 8388
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27885
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

11-72404705-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404705
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404705
    reference: chr 11
allele count: 1
allele frequency: 2.143714628708626e-5
allele num: 46648
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-108C>T
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3808+32G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.211+32G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.220+32G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3808+32G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4473+32G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3088+32G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3073+32G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3073+32G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1651+32G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.175+32G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3808+32G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2890+32G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8388
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3344
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27885
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

11-72404706-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404706
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404706
    reference: chr 11
allele count: 1
allele frequency: 2.115238175818597e-5
allele num: 47276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.175+31C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3073+31C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2890+31C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3073+31C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3808+31C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3088+31C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3808+31C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-107G>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.220+31C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3808+31C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.211+31C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4473+31C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1651+31C>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8096
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14677
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

11-72404712-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404712
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404712
    reference: chr 11
allele count: 3
allele frequency: 6.213238339822715e-5
allele num: 48284
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.175+25A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.220+25A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3808+25A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3073+25A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3808+25A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4473+25A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1651+25A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3088+25A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-101T>C
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2890+25A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3808+25A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3073+25A>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.211+25A>G
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28950
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6837
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14454
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

11-72404716-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404716
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404716
    reference: chr 11
allele count: 48
allele frequency: 9.590792838874681e-4
allele num: 50048
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3808+21G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.211+21G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3808+21G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.220+21G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3088+21G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3808+21G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3073+21G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.175+21G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3073+21G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-97C>G
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4473+21G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1651+21G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2890+21G>C
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14214
  bin: 1.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29285
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/11-72404719-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404719
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404719
    reference: chr 11
allele count: 2
allele frequency: 3.923107100823853e-5
allele num: 50980
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.211+18G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3073+18G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3808+18G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3073+18G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.220+18G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1651+18G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-94C>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3088+18G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4473+18G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3808+18G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2890+18G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3808+18G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.175+18G>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29555
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13976
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5518
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

11-72404727-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404727
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404727
    reference: chr 11
allele count: 3
allele frequency: 5.413598960588999e-5
allele num: 55416
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-86C>T
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.211+10G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1651+10G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3073+10G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3073+10G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4473+10G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.175+10G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.220+10G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3808+10G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3088+10G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.310G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3808+10G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2890+10G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3808+10G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12822
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

11-72404730-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404730
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404730
    reference: chr 11
allele count: 4
allele frequency: 6.975203152791825e-5
allele num: 57346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.307G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3073+7G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3088+7G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4473+7G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3808+7G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1651+7G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2890+7G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3073+7G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.220+7G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3808+7G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-83C>T
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.211+7G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.175+7G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3808+7G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10116
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.3808+7G>A
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

11-72404739-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404739
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404739
    reference: chr 11
allele count: 1
allele frequency: 1.57114127702363e-5
allele num: 63648
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3806T>C
  hgvsp: ENSP00000390461.2:p.Leu1269Pro
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.209T>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.173T>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3806T>C
  hgvsp: ENSP00000352332.5:p.Leu1269Pro
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3071T>C
  hgvsp: ENSP00000392264.1:p.Leu1024Pro
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1649T>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-74A>G
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3086T>C
  hgvsp: ENSP00000377230.3:p.Leu1029Pro
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3071T>C
  hgvsp: ENSP00000335506.8:p.Leu1024Pro
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4471T>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2888T>C
  hgvsp: ENSP00000403127.1:p.Leu963Pro
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.298T>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3806T>C
  hgvsp: ENSP00000377233.3:p.Leu1269Pro
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.218T>C
  hgvsp: ENSP00000441741.1:p.Leu73Pro
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26829
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu1269Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS

11-72404741-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404741
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404741
    reference: chr 11
allele count: 1
allele frequency: 1.543448062972681e-5
allele num: 64790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.171C>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3084C>A
  hgvsp: ENSP00000377230.3:p.Tyr1028Ter
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.207C>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3069C>A
  hgvsp: ENSP00000335506.8:p.Tyr1023Ter
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.216C>A
  hgvsp: ENSP00000441741.1:p.Tyr72Ter
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3069C>A
  hgvsp: ENSP00000392264.1:p.Tyr1023Ter
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1647C>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2886C>A
  hgvsp: ENSP00000403127.1:p.Tyr962Ter
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.296C>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3804C>A
  hgvsp: ENSP00000390461.2:p.Tyr1268Ter
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3804C>A
  hgvsp: ENSP00000377233.3:p.Tyr1268Ter
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3804C>A
  hgvsp: ENSP00000352332.5:p.Tyr1268Ter
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-72G>T
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4469C>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9917
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15357
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr1268Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-72404755-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404755
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404755
    reference: chr 11
allele count: 61
allele frequency: 8.541024922990759e-4
allele num: 71420
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.282G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.202G>T
  hgvsp: ENSP00000441741.1:p.Ala68Ser
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3055G>T
  hgvsp: ENSP00000392264.1:p.Ala1019Ser
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3790G>T
  hgvsp: ENSP00000377233.3:p.Ala1264Ser
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3790G>T
  hgvsp: ENSP00000390461.2:p.Ala1264Ser
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2872G>T
  hgvsp: ENSP00000403127.1:p.Ala958Ser
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.193G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3055G>T
  hgvsp: ENSP00000335506.8:p.Ala1019Ser
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3790G>T
  hgvsp: ENSP00000352332.5:p.Ala1264Ser
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.157G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3070G>T
  hgvsp: ENSP00000377230.3:p.Ala1024Ser
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4455G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-58C>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1633G>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18816
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4257
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala1264Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-72404771-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404771
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404771
    reference: chr 11
allele count: 9
allele frequency: 1.132759401903036e-4
allele num: 79452
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3774G>A
  hgvsp: ENST00000359373.5:c.3774G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.177G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3054G>A
  hgvsp: ENST00000393605.3:c.3054G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1617G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3039G>A
  hgvsp: ENST00000426523.1:c.3039G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2856G>A
  hgvsp: ENST00000429686.1:c.2856G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3774G>A
  hgvsp: ENST00000393609.3:c.3774G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.266G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3774G>A
  hgvsp: ENST00000455638.2:c.3774G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-42C>T
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.141G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3039G>A
  hgvsp: ENST00000334211.8:c.3039G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4439G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.186G>A
  hgvsp: ENST00000542596.1:c.186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19827
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6764
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24247
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys1258Lys
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-72404786-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404786
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404786
    reference: chr 11
allele count: 1
allele frequency: 1.232680834278389e-5
allele num: 81124
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.162C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3759C>G
  hgvsp: ENSP00000352332.5:p.His1253Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3759C>G
  hgvsp: ENSP00000390461.2:p.His1253Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.126C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2841C>G
  hgvsp: ENSP00000403127.1:p.His947Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1602C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3024C>G
  hgvsp: ENSP00000392264.1:p.His1008Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.251C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3759C>G
  hgvsp: ENSP00000377233.3:p.His1253Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-27G>C
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3039C>G
  hgvsp: ENSP00000377230.3:p.His1013Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3024C>G
  hgvsp: ENSP00000335506.8:p.His1008Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.171C>G
  hgvsp: ENSP00000441741.1:p.His57Gln
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4424C>G
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7030
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19079
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5766
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His1253Gln
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

11-72404789-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404789
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404789
    reference: chr 11
allele count: 1
allele frequency: 1.235055824523268e-5
allele num: 80968
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4421C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3021C>T
  hgvsp: ENST00000426523.1:c.3021C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3756C>T
  hgvsp: ENST00000359373.5:c.3756C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.168C>T
  hgvsp: ENST00000542596.1:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3036C>T
  hgvsp: ENST00000393605.3:c.3036C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1599C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2838C>T
  hgvsp: ENST00000429686.1:c.2838C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3756C>T
  hgvsp: ENST00000393609.3:c.3756C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3756C>T
  hgvsp: ENST00000455638.2:c.3756C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3021C>T
  hgvsp: ENST00000334211.8:c.3021C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.248C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-24G>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.159C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.123C>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23504
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7085
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser1252Ser
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

11-72404796-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404796
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404796
    reference: chr 11
allele count: 5
allele frequency: 6.216585851050602e-5
allele num: 80430
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2831C>T
  hgvsp: ENSP00000403127.1:p.Thr944Met
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3749C>T
  hgvsp: ENSP00000377233.3:p.Thr1250Met
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-17G>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3014C>T
  hgvsp: ENSP00000335506.8:p.Thr1005Met
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1592C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.241C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.152C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3749C>T
  hgvsp: ENSP00000390461.2:p.Thr1250Met
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.116C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3749C>T
  hgvsp: ENSP00000352332.5:p.Thr1250Met
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3029C>T
  hgvsp: ENSP00000377230.3:p.Thr1010Met
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.161C>T
  hgvsp: ENSP00000441741.1:p.Thr54Met
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4414C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3014C>T
  hgvsp: ENSP00000392264.1:p.Thr1005Met
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7670
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr1250Met
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD

11-72404801-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404801
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404801
    reference: chr 11
allele count: 1
allele frequency: 1.263487731534127e-5
allele num: 79146
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3744G>C
  hgvsp: ENST00000393609.3:c.3744G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.156G>C
  hgvsp: ENST00000542596.1:c.156G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.236G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3744G>C
  hgvsp: ENST00000359373.5:c.3744G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.111G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3024G>C
  hgvsp: ENST00000393605.3:c.3024G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.147G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1587G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3744G>C
  hgvsp: ENST00000455638.2:c.3744G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4409G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2826G>C
  hgvsp: ENST00000429686.1:c.2826G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3009G>C
  hgvsp: ENST00000426523.1:c.3009G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3009G>C
  hgvsp: ENST00000334211.8:c.3009G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-12C>G
  variant of: http://identifiers.org/hgnc/39993
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19725
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu1248Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

11-72404803-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404803
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404803
    reference: chr 11
allele count: 1
allele frequency: 1.266367803864955e-5
allele num: 78966
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3742C>G
  hgvsp: ENSP00000377233.3:p.Leu1248Val
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.145C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4407C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3742C>G
  hgvsp: ENSP00000352332.5:p.Leu1248Val
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1585C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-10G>C
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.109C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3007C>G
  hgvsp: ENSP00000335506.8:p.Leu1003Val
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.154C>G
  hgvsp: ENSP00000441741.1:p.Leu52Val
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3022C>G
  hgvsp: ENSP00000377230.3:p.Leu1008Val
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3742C>G
  hgvsp: ENSP00000390461.2:p.Leu1248Val
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.234C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3007C>G
  hgvsp: ENSP00000392264.1:p.Leu1003Val
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2824C>G
  hgvsp: ENSP00000403127.1:p.Leu942Val
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8682
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19820
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu1248Val
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

11-72404805-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404805
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404805
    reference: chr 11
allele count: 1
allele frequency: 1.267138042018297e-5
allele num: 78918
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3020G>C
  hgvsp: ENSP00000377230.3:p.Gly1007Ala
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3740G>C
  hgvsp: ENSP00000390461.2:p.Gly1247Ala
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3005G>C
  hgvsp: ENSP00000335506.8:p.Gly1002Ala
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2822G>C
  hgvsp: ENSP00000403127.1:p.Gly941Ala
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3005G>C
  hgvsp: ENSP00000392264.1:p.Gly1002Ala
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000546293
  gene symbol: ARAP1
  hgvsc: ENST00000546293.1:n.702G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3740G>C
  hgvsp: ENSP00000377233.3:p.Gly1247Ala
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3740G>C
  hgvsp: ENSP00000352332.5:p.Gly1247Ala
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.143G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.152G>C
  hgvsp: ENSP00000441741.1:p.Gly51Ala
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1583G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-8C>G
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4405G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.107G>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.232G>C
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19864
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly1247Ala
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/11-72404806-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404806
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404806
    reference: chr 11
allele count: 5
allele frequency: 6.361161293605761e-5
allele num: 78602
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3004G>T
  hgvsp: ENSP00000335506.8:p.Gly1002Trp
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1582G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3739G>T
  hgvsp: ENSP00000352332.5:p.Gly1247Trp
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3019G>T
  hgvsp: ENSP00000377230.3:p.Gly1007Trp
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2821G>T
  hgvsp: ENSP00000403127.1:p.Gly941Trp
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-7C>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3739G>T
  hgvsp: ENSP00000377233.3:p.Gly1247Trp
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.106G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000546293
  gene symbol: ARAP1
  hgvsc: ENST00000546293.1:n.701G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.151G>T
  hgvsp: ENSP00000441741.1:p.Gly51Trp
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3004G>T
  hgvsp: ENSP00000392264.1:p.Gly1002Trp
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3739G>T
  hgvsp: ENSP00000390461.2:p.Gly1247Trp
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.142G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4404G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.231G>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5749
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8975
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly1247Trp
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

11-72404806-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404806
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404806
    reference: chr 11
allele count: 4
allele frequency: 5.088929034884609e-5
allele num: 78602
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3004G>A
  hgvsp: ENSP00000335506.8:p.Gly1002Arg
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.142G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.106G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000546293
  gene symbol: ARAP1
  hgvsc: ENST00000546293.1:n.701G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2821G>A
  hgvsp: ENSP00000403127.1:p.Gly941Arg
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3019G>A
  hgvsp: ENSP00000377230.3:p.Gly1007Arg
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3004G>A
  hgvsp: ENSP00000392264.1:p.Gly1002Arg
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.231G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3739G>A
  hgvsp: ENSP00000352332.5:p.Gly1247Arg
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1582G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-7C>T
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3739G>A
  hgvsp: ENSP00000390461.2:p.Gly1247Arg
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.151G>A
  hgvsp: ENSP00000441741.1:p.Gly51Arg
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4404G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3739G>A
  hgvsp: ENSP00000377233.3:p.Gly1247Arg
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19905
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8975
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly1247Arg
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP

11-72404807-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404807
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404807
    reference: chr 11
allele count: 7
allele frequency: 8.976200246204349e-5
allele num: 77984
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.348-6G>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2820C>T
  hgvsp: ENST00000429686.1:c.2820C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.230C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.150C>T
  hgvsp: ENST00000542596.1:c.150C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3738C>T
  hgvsp: ENST00000359373.5:c.3738C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4403C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3018C>T
  hgvsp: ENST00000393605.3:c.3018C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3738C>T
  hgvsp: ENST00000455638.2:c.3738C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.141C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.3003C>T
  hgvsp: ENST00000334211.8:c.3003C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.3003C>T
  hgvsp: ENST00000426523.1:c.3003C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.105C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1581C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3738C>T
  hgvsp: ENST00000393609.3:c.3738C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000546293
  gene symbol: ARAP1
  hgvsc: ENST00000546293.1:n.700C>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19687
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9236
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.348-6G>A
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

11-72404822-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404822
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404822
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 73816
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.2988G>A
  hgvsp: ENST00000334211.8:c.2988G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4388G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.126G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3003G>A
  hgvsp: ENST00000393605.3:c.3003G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.357C>T
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000546293
  gene symbol: ARAP1
  hgvsc: ENST00000546293.1:n.685G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2805G>A
  hgvsp: ENST00000429686.1:c.2805G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3723G>A
  hgvsp: ENST00000359373.5:c.3723G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.2988G>A
  hgvsp: ENST00000426523.1:c.2988G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3723G>A
  hgvsp: ENST00000393609.3:c.3723G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.90G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3723G>A
  hgvsp: ENST00000455638.2:c.3723G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.135G>A
  hgvsp: ENST00000542596.1:c.135G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1566G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.215G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11561
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val1241Val
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

11-72404825-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404825
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404825
    reference: chr 11
allele count: 3
allele frequency: 4.126774513040608e-5
allele num: 72696
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.132G>A
  hgvsp: ENST00000542596.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.2985G>A
  hgvsp: ENST00000426523.1:c.2985G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.360C>T
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.2985G>A
  hgvsp: ENST00000334211.8:c.2985G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3720G>A
  hgvsp: ENST00000455638.2:c.3720G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000546293
  gene symbol: ARAP1
  hgvsc: ENST00000546293.1:n.682G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.3000G>A
  hgvsp: ENST00000393605.3:c.3000G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2802G>A
  hgvsp: ENST00000429686.1:c.2802G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3720G>A
  hgvsp: ENST00000393609.3:c.3720G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3720G>A
  hgvsp: ENST00000359373.5:c.3720G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4385G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.87G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.212G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1563G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.123G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12153
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22081
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys1240Lys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

11-72404831-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404831
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404831
    reference: chr 11
allele count: 1
allele frequency: 1.431721215244967e-5
allele num: 69846
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.126G>A
  hgvsp: ENST00000542596.1:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1557G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3714G>A
  hgvsp: ENST00000393609.3:c.3714G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.2994G>A
  hgvsp: ENST00000393605.3:c.2994G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2796G>A
  hgvsp: ENST00000429686.1:c.2796G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.81G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3714G>A
  hgvsp: ENST00000359373.5:c.3714G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.2979G>A
  hgvsp: ENST00000334211.8:c.2979G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4379G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.206G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.2979G>A
  hgvsp: ENST00000426523.1:c.2979G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000546293
  gene symbol: ARAP1
  hgvsc: ENST00000546293.1:n.676G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.117G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.366C>T
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3714G>A
  hgvsp: ENST00000455638.2:c.3714G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala1238Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

11-72404832-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404832
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404832
    reference: chr 11
allele count: 4
allele frequency: 5.833625014584062e-5
allele num: 68568
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.2978C>T
  hgvsp: ENSP00000392264.1:p.Ala993Val
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3713C>T
  hgvsp: ENSP00000352332.5:p.Ala1238Val
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000546293
  gene symbol: ARAP1
  hgvsc: ENST00000546293.1:n.675C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.367G>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.2993C>T
  hgvsp: ENSP00000377230.3:p.Ala998Val
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1556C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.116C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.125C>T
  hgvsp: ENSP00000441741.1:p.Ala42Val
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.2978C>T
  hgvsp: ENSP00000335506.8:p.Ala993Val
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2795C>T
  hgvsp: ENSP00000403127.1:p.Ala932Val
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3713C>T
  hgvsp: ENSP00000377233.3:p.Ala1238Val
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3713C>T
  hgvsp: ENSP00000390461.2:p.Ala1238Val
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4378C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.205C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.80C>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13801
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala1238Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

11-72404844-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404844
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404844
    reference: chr 11
allele count: 1
allele frequency: 1.701143168209037e-5
allele num: 58784
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.2966C>T
  hgvsp: ENSP00000335506.8:p.Pro989Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3701C>T
  hgvsp: ENSP00000352332.5:p.Pro1234Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.68C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.104C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1544C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3701C>T
  hgvsp: ENSP00000390461.2:p.Pro1234Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.113C>T
  hgvsp: ENSP00000441741.1:p.Pro38Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.2981C>T
  hgvsp: ENSP00000377230.3:p.Pro994Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.2966C>T
  hgvsp: ENSP00000392264.1:p.Pro989Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2783C>T
  hgvsp: ENSP00000403127.1:p.Pro928Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.379G>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4366C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000546293
  gene symbol: ARAP1
  hgvsc: ENST00000546293.1:n.663C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.193C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3701C>T
  hgvsp: ENSP00000377233.3:p.Pro1234Leu
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24724
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro1234Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

11-72404846-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404846
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404846
    reference: chr 11
allele count: 1
allele frequency: 1.702533369654045e-5
allele num: 58736
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2781C>T
  hgvsp: ENST00000429686.1:c.2781C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.2964C>T
  hgvsp: ENST00000426523.1:c.2964C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1542C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.111C>T
  hgvsp: ENST00000542596.1:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.2979C>T
  hgvsp: ENST00000393605.3:c.2979C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.2964C>T
  hgvsp: ENST00000334211.8:c.2964C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.191C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3699C>T
  hgvsp: ENST00000393609.3:c.3699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3699C>T
  hgvsp: ENST00000455638.2:c.3699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.381G>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3699C>T
  hgvsp: ENST00000359373.5:c.3699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.102C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4364C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.66C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000546293
  gene symbol: ARAP1
  hgvsc: ENST00000546293.1:n.661C>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16010
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24947
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1233Arg
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/11-72404847-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404847
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404847
    reference: chr 11
allele count: 1
allele frequency: 1.723246596587972e-5
allele num: 58030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3698G>T
  hgvsp: ENSP00000352332.5:p.Arg1233Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4363G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.2963G>T
  hgvsp: ENSP00000392264.1:p.Arg988Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000546293
  gene symbol: ARAP1
  hgvsc: ENST00000546293.1:n.660G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1541G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2780G>T
  hgvsp: ENSP00000403127.1:p.Arg927Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3698G>T
  hgvsp: ENSP00000390461.2:p.Arg1233Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3698G>T
  hgvsp: ENSP00000377233.3:p.Arg1233Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.2978G>T
  hgvsp: ENSP00000377230.3:p.Arg993Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.382C>A
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.101G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.110G>T
  hgvsp: ENSP00000441741.1:p.Arg37Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.190G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.2963G>T
  hgvsp: ENSP00000335506.8:p.Arg988Leu
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.65G>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5784
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15989
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1233Leu
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

11-72404847-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404847
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404847
    reference: chr 11
allele count: 1
allele frequency: 1.723246596587972e-5
allele num: 58030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2780G>A
  hgvsp: ENSP00000403127.1:p.Arg927His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.101G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.2963G>A
  hgvsp: ENSP00000392264.1:p.Arg988His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3698G>A
  hgvsp: ENSP00000352332.5:p.Arg1233His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1541G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.110G>A
  hgvsp: ENSP00000441741.1:p.Arg37His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.2963G>A
  hgvsp: ENSP00000335506.8:p.Arg988His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.65G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3698G>A
  hgvsp: ENSP00000390461.2:p.Arg1233His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4363G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000256007
  ensembl transcript: ENST00000542022
  gene symbol: ARAP1-AS1
  hgvsc: ENST00000542022.1:n.382C>T
  variant of: http://identifiers.org/hgnc/39993
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.190G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3698G>A
  hgvsp: ENSP00000377233.3:p.Arg1233His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.2978G>A
  hgvsp: ENSP00000377230.3:p.Arg993His
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000546293
  gene symbol: ARAP1
  hgvsc: ENST00000546293.1:n.660G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15989
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1233His
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

11-72404858-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404858
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404858
    reference: chr 11
allele count: 2
allele frequency: 3.921414846476609e-5
allele num: 51002
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4360-8C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.107-8C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.2960-8C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3695-8C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3695-8C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.62-8C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.2975-8C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2777-8C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.187-8C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000546293
  gene symbol: ARAP1
  hgvsc: ENST00000546293.1:n.657-8C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1538-8C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.2960-8C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3695-8C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.98-8C>G
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25448
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4523
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15363
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.3695-8C>G
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

11-72404860-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404860
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404860
    reference: chr 11
allele count: 1
allele frequency: 2.003205128205128e-5
allele num: 49920
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1538-10C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2777-10C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.2960-10C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000546293
  gene symbol: ARAP1
  hgvsc: ENST00000546293.1:n.657-10C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.107-10C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3695-10C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3695-10C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3695-10C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.187-10C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.2960-10C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4360-10C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.2975-10C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.98-10C>G
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.62-10C>G
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9836
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS

http://identifiers.org/exac.variant/11-72404872-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404872
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404872
    reference: chr 11
allele count: 1
allele frequency: 2.496006389776358e-5
allele num: 40064
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4360-22G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.2975-22G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3695-22G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2777-22G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.2960-22G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.62-22G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.98-22G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.2960-22G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000546293
  gene symbol: ARAP1
  hgvsc: ENST00000546293.1:n.657-22G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3695-22G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.107-22G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1538-22G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.187-22G>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3695-22G>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12836
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

11-72404873-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404873
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404873
    reference: chr 11
allele count: 2
allele frequency: 5.077946478444118e-5
allele num: 39386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.2960-23C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.107-23C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.62-23C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4360-23C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.98-23C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3695-23C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000546293
  gene symbol: ARAP1
  hgvsc: ENST00000546293.1:n.657-23C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3695-23C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.2975-23C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2777-23C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.2960-23C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1538-23C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.187-23C>T
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3695-23C>T
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24138
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15728
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12611
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

11-72404878-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404878
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404878
    reference: chr 11
allele count: 1
allele frequency: 2.911038658593386e-5
allele num: 34352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000546293
  gene symbol: ARAP1
  hgvsc: ENST00000546293.1:n.657-28A>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3695-28A>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.2960-28A>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3695-28A>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.62-28A>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.2960-28A>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.98-28A>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1538-28A>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.187-28A>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.2975-28A>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2777-28A>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3695-28A>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.107-28A>C
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4360-28A>C
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10711
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23872
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

11-72404886-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404886
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404886
    reference: chr 11
allele count: 1
allele frequency: 3.223310985043837e-5
allele num: 31024
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3695-36G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3695-36G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3695-36G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1538-36G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000392264
  ensembl transcript: ENST00000426523
  gene symbol: ARAP1
  hgvsc: ENST00000426523.1:c.2960-36G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.107-36G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.62-36G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.187-36G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.2960-36G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.2975-36G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.98-36G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2777-36G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000546293
  gene symbol: ARAP1
  hgvsc: ENST00000546293.1:n.657-36G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4360-36G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

11-72404893-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 72404893
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 72404893
    reference: chr 11
allele count: 718
allele frequency: 2.582919634506079e-2
allele num: 27798
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000352332
  ensembl transcript: ENST00000359373
  gene symbol: ARAP1
  hgvsc: ENST00000359373.5:c.3695-43G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000403127
  ensembl transcript: ENST00000429686
  gene symbol: ARAP1
  hgvsc: ENST00000429686.1:c.2777-43G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000441741
  ensembl transcript: ENST00000542596
  gene symbol: ARAP1
  hgvsc: ENST00000542596.1:c.107-43G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000543868
  gene symbol: ARAP1
  hgvsc: ENST00000543868.1:n.62-43G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000495878
  gene symbol: ARAP1
  hgvsc: ENST00000495878.1:n.1538-43G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377233
  ensembl transcript: ENST00000393609
  gene symbol: ARAP1
  hgvsc: ENST00000393609.3:c.3695-43G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000335506
  ensembl transcript: ENST00000334211
  gene symbol: ARAP1
  hgvsc: ENST00000334211.8:c.2960-43G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000390461
  ensembl transcript: ENST00000455638
  gene symbol: ARAP1
  hgvsc: ENST00000455638.2:c.3695-43G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000546293
  gene symbol: ARAP1
  hgvsc: ENST00000546293.1:n.657-43G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl protein: ENSP00000377230
  ensembl transcript: ENST00000393605
  gene symbol: ARAP1
  hgvsc: ENST00000393605.3:c.2975-43G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000544958
  gene symbol: ARAP1
  hgvsc: ENST00000544958.1:n.98-43G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000536993
  gene symbol: ARAP1
  hgvsc: ENST00000536993.1:n.187-43G>A
  variant of: http://identifiers.org/hgnc/16925
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186635
  ensembl transcript: ENST00000465814
  gene symbol: ARAP1
  hgvsc: ENST00000465814.1:n.4360-43G>A
  variant of: http://identifiers.org/hgnc/16925
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 60
reference allele: C

GenotypeDepth
all individuals: 641
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2548
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 359
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 391
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 281
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2977
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11724
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3359
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2797
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2062
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32059
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3282
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66472
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.657e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
type: SiteQuality
SIO_000300: 7.18e-1

QD
type: SiteQuality
SIO_000300: 1.084e1

VQSLOD
type: SiteQuality
SIO_000300: 8.46e-1

ClippingRankSum
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DP
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FS
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504347564461293e-5
allele num: 66474
num of homozygotes: 0

East Asian
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Other
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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African
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Latino
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MQ
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BaseQRankSum
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DP
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QD
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MQRankSum
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ClippingRankSum
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FS
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.504890895410083e-5
allele num: 66450
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South Asian
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East Asian
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African
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Other
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InbreedingCoeff
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ReadPosRankSum
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FS
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DP
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VQSLOD
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MQ
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MQRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

South Asian
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African
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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European (Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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QD
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VQSLOD
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FS
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ReadPosRankSum
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MQ
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DP
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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Latino
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East Asian
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African
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European (Finnish)
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South Asian
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InbreedingCoeff
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MQ
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VQSLOD
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QD
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FS
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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South Asian
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European (Non-Finnish)
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Other
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East Asian
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European (Finnish)
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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MQ
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DP
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FS
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ReadPosRankSum
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ClippingRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
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Latino
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East Asian
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European (Non-Finnish)
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Other
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MQ
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FS
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QD
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InbreedingCoeff
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ReadPosRankSum
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DP
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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DP
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MQ
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FS
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MQRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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East Asian
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European (Finnish)
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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FS
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Latino
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South Asian
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ClippingRankSum
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VQSLOD
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QD
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InbreedingCoeff
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MQRankSum
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MQ
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FS
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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African
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South Asian
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East Asian
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FS
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MQ
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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VQSLOD
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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South Asian
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European (Non-Finnish)
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VQSLOD
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MQ
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Non-Finnish)
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VQSLOD
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FS
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MQ
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South Asian
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MQ
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VQSLOD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.525553012967201e-5
allele num: 65550
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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VQSLOD
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MQRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQ
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SIO_000300: 5.989e1

ClippingRankSum
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SIO_000300: 1.1e-2

DP
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 3
allele frequency: 1.989653800238758e-4
allele num: 15078
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65496
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
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MQRankSum
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MQ
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VQSLOD
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FS
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QD
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InbreedingCoeff
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SIO_000300: 1.0e-4

ReadPosRankSum
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SIO_000300: 1.11e0

BaseQRankSum
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ClippingRankSum
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SIO_000300: -1.2e0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 9

European (Non-Finnish)
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allele count: 9
allele frequency: 1.374003847210772e-4
allele num: 65502
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
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South Asian
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

ReadPosRankSum
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SIO_000300: 1.38e-1

ClippingRankSum
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VQSLOD
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FS
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BaseQRankSum
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QD
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SIO_000300: 1.177e1

MQRankSum
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SIO_000300: 1.46e-1

MQ
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DP
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SIO_000300: 2.457344e6

InbreedingCoeff
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SIO_000300: 0.0e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele count: 1
allele frequency: 9.767532721234616e-5
allele num: 10238
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65374
num of homozygotes: 0

Other
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allele count: 0
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BaseQRankSum
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DP
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ClippingRankSum
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VQSLOD
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QD
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MQ
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FS
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MQRankSum
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InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

ReadPosRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.533413070813016e-5
allele num: 65214
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

South Asian
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allele count: 0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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MQ
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ReadPosRankSum
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MQRankSum
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DP
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QD
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.599674956303088e-5
allele num: 65222
num of homozygotes: 0

African
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Other
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Latino
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num of homozygotes: 0

East Asian
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MQ
type: SiteQuality
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ReadPosRankSum
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QD
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DP
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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MQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

South Asian
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Other
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African
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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MQ
type: SiteQuality
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InbreedingCoeff
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QD
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MQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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DP
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VQSLOD
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SIO_000300: 6.4e-3

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.983240223463687e-5
allele num: 14320
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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FS
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SIO_000300: 2.122e0

BaseQRankSum
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MQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 7.197351374694113e-5
allele num: 13894
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Latino
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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QD
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DP
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MQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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MQ
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.551494088807522e-5
allele num: 64454
num of homozygotes: 0

African
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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FS
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DP
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BaseQRankSum
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QD
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MQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQ
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SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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South Asian
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allele frequency: 2.249212775528565e-4
allele num: 13338
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Other
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allele frequency: 0.0e0
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East Asian
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allele count: 2
allele frequency: 2.330459100442787e-4
allele num: 8582
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FS
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SIO_000300: 1.455e0

VQSLOD
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MQ
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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DP
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QD
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BaseQRankSum
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SIO_000300: 2.9e0

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 2
allele frequency: 2.386634844868735e-3
allele num: 838
num of homozygotes: 0

South Asian
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allele frequency: 2.398081534772182e-3
allele num: 13344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 1
allele frequency: 1.532332209623046e-4
allele num: 6526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.555403471660549e-5
allele num: 64292
num of homozygotes: 0

African
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allele count: 3
allele frequency: 2.973830293417922e-4
allele num: 10088
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Latino
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allele count: 2
allele frequency: 1.737619461337967e-4
allele num: 11510
num of homozygotes: 0

MQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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DP
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VQSLOD
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FS
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ClippingRankSum
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
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East Asian
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allele frequency: 0.0e0
allele num: 2552
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3000
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European (Non-Finnish)
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allele count: 1
allele frequency: 3.646973012399708e-5
allele num: 27420
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South Asian
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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FS
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QD
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MQRankSum
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InbreedingCoeff
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DP
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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South Asian
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European (Non-Finnish)
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East Asian
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allele frequency: 0.0e0
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African
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Latino
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MQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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MQ
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SIO_000300: 5.884e1

FS
type: SiteQuality
SIO_000300: 7.61e0

DP
type: SiteQuality
SIO_000300: 6.16717e5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27174
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2530
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2948
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4848
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
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SIO_000300: 7.36e-1

ClippingRankSum
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FS
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VQSLOD
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BaseQRankSum
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QD
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InbreedingCoeff
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SIO_000300: -1.82e-2

MQ
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SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.18308e5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 6.255212677231026e-4
allele num: 4796
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.24367e5

MQ
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SIO_000300: 5.931e1

VQSLOD
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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FS
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SIO_000300: 1.3112e1

QD
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SIO_000300: 1.472e1

ClippingRankSum
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SIO_000300: -2.95e-1

InbreedingCoeff
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SIO_000300: -1.81e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4774
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 26754
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.73e-2

FS
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SIO_000300: 5.826e0

MQRankSum
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SIO_000300: -3.6e-2

VQSLOD
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BaseQRankSum
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SIO_000300: 0.0e0

MQ
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SIO_000300: 6.0e1

DP
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SIO_000300: 6.31573e5

ReadPosRankSum
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SIO_000300: 1.22e-1

QD
type: SiteQuality
SIO_000300: 1.173e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.49e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2890
num of homozygotes: 0

South Asian
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allele count: 1
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allele num: 7724
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1710
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 26754
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 1.73e-2

DP
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ReadPosRankSum
type: SiteQuality
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FS
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QD
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MQ
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VQSLOD
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BaseQRankSum
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.49e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4816
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.694672282568536e-5
allele num: 27066
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.96e-1

DP
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QD
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FS
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MQ
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 8006
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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ClippingRankSum
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BaseQRankSum
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DP
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FS
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VQSLOD
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MQRankSum
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QD
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InbreedingCoeff
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SIO_000300: -1.44e-2

ReadPosRankSum
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MQ
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SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 45
allele frequency: 1.571997484804024e-3
allele num: 28626
num of homozygotes: 0

Other
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European (Finnish)
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allele frequency: 5.47645125958379e-4
allele num: 1826
num of homozygotes: 0

African
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allele count: 2
allele frequency: 4.012841091492777e-4
allele num: 4984
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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FS
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QD
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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VQSLOD
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DP
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SIO_000300: 6.78628e5

InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.428884926621862e-5
allele num: 29164
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3342
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 5.347593582887701e-4
allele num: 1870
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: -1.545e0

MQ
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3802
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5358
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 31540
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3262
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 3.331112591605596e-4
allele num: 9006
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ReadPosRankSum
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SIO_000300: -2.27e-1

MQRankSum
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MQ
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FS
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QD
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InbreedingCoeff
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DP
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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SIO_000300: -1.966e0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2100
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 4
allele frequency: 4.282655246252676e-4
allele num: 9340
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 32534
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.8e-1

ClippingRankSum
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FS
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -6.899999999999999e-1

InbreedingCoeff
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SIO_000300: -7.900000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.02e-1

DP
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SIO_000300: 7.725e5

MQ
type: SiteQuality
SIO_000300: 5.928e1

QD
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SIO_000300: 1.082e1

ReadPosRankSum
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SIO_000300: 8.699999999999999e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4786
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.76380520700901e-5
allele num: 36182
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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VQSLOD
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QD
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MQRankSum
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InbreedingCoeff
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DP
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MQ
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -3.69e-1

ReadPosRankSum
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FS
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 2.712379299121189e-5
allele num: 36868
num of homozygotes: 0

East Asian
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African
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South Asian
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European (Finnish)
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Other
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Latino
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MQ
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VQSLOD
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ClippingRankSum
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DP
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BaseQRankSum
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FS
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MQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 40588
num of homozygotes: 0

Latino
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African
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Other
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 5.367540029112081e-3
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MQRankSum
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QD
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DP
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MQ
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BaseQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 9
allele frequency: 1.292360712234348e-3
allele num: 6964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44994
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11812
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6780
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5442
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2896
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.093e0

FS
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SIO_000300: 2.404e0

InbreedingCoeff
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SIO_000300: -3.1e-3

MQRankSum
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VQSLOD
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QD
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MQ
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DP
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ClippingRankSum
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SIO_000300: -5.3e-2

ReadPosRankSum
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SIO_000300: 2.51e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7038
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.40607424071991e-4
allele num: 7112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2916
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11980
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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SIO_000300: 1.018174e6

ReadPosRankSum
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SIO_000300: -5.19e-1

MQRankSum
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SIO_000300: -1.38e-1

VQSLOD
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SIO_000300: 1.43e0

FS
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InbreedingCoeff
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SIO_000300: -3.1e-3

ClippingRankSum
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SIO_000300: 6.33e-1

QD
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SIO_000300: 1.404e1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7012
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.406469760900141e-4
allele num: 7110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11964
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5724
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
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SIO_000300: 6.0e1

DP
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ClippingRankSum
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SIO_000300: -4.16e-1

MQRankSum
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SIO_000300: 1.63e0

ReadPosRankSum
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SIO_000300: 5.669999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.141e-1

QD
type: SiteQuality
SIO_000300: 8.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.247e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 4

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6938
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11932
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7078
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 1.103411749128305e-4
allele num: 45314
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

VQSLOD
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SIO_000300: -1.739e-1

MQRankSum
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ClippingRankSum
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FS
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SIO_000300: 3.779e0

MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -4.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

DP
type: SiteQuality
SIO_000300: 1.0108e6

QD
type: SiteQuality
SIO_000300: 7.53e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.242353574311598e-5
allele num: 44596
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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African
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East Asian
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MQRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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VQSLOD
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DP
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ReadPosRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
type: Population
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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allele count: 1
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allele num: 44506
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African
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ClippingRankSum
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DP
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FS
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BaseQRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6960
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.444519506840061e-5
allele num: 11842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5516
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

FS
type: SiteQuality
SIO_000300: 1.307e0

VQSLOD
type: SiteQuality
SIO_000300: 5.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

QD
type: SiteQuality
SIO_000300: 1.52e1

DP
type: SiteQuality
SIO_000300: 9.83565e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeDepth
all individuals: 19905
bin: 7.5e0
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 17
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
all individuals: 5
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variant carriers: 0

GenotypeDepth
all individuals: 20196
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variant carriers: 3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 82
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 391
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 5.47645125958379e-4
allele num: 5478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6948
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2776
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.514061300952467e-5
allele num: 44306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.021e0

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.379e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

QD
type: SiteQuality
SIO_000300: 4.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e-1

DP
type: SiteQuality
SIO_000300: 9.8148e5

BaseQRankSum
type: SiteQuality
SIO_000300: -8.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

GenotypeDepth
all individuals: 2696
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variant carriers: 2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 1275
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 125
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 756
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variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2776
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.460236886632826e-5
allele num: 11820
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.439263097294185e-4
allele num: 6948
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.514061300952467e-5
allele num: 44306
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.379e0

FS
type: SiteQuality
SIO_000300: 2.021e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.94e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

QD
type: SiteQuality
SIO_000300: 4.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e-1

DP
type: SiteQuality
SIO_000300: 9.8148e5

GenotypeDepth
all individuals: 16
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 20028
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variant carriers: 1

GenotypeDepth
all individuals: 1239
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variant carriers: 0

GenotypeDepth
all individuals: 94
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 5
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GenotypeDepth
all individuals: 20
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1079
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1840
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GenotypeQuality
all individuals: 646
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1577
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 634
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 21913
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variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2748
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 4.250255015300918e-4
allele num: 11764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.546694553059925e-5
allele num: 43988
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5444
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 5.639999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

DP
type: SiteQuality
SIO_000300: 9.75238e5

VQSLOD
type: SiteQuality
SIO_000300: 6.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

QD
type: SiteQuality
SIO_000300: 1.052e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.97e-1

GenotypeDepth
all individuals: 20
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 125
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variant carriers: 0

GenotypeDepth
all individuals: 21645
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variant carriers: 1

GenotypeDepth
all individuals: 7
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variant carriers: 0

GenotypeDepth
all individuals: 5235
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GenotypeDepth
all individuals: 52
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GenotypeDepth
all individuals: 148
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GenotypeDepth
all individuals: 94
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GenotypeDepth
all individuals: 17
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GenotypeDepth
all individuals: 5
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GenotypeQuality
all individuals: 1935
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 417
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variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5070
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.973e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.068e0

MQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

DP
type: SiteQuality
SIO_000300: 9.16176e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 5.84e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.376e0

GenotypeDepth
all individuals: 2008
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 82
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variant carriers: 0

GenotypeDepth
all individuals: 5
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variant carriers: 0

GenotypeDepth
all individuals: 94
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GenotypeDepth
all individuals: 150
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GenotypeDepth
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GenotypeDepth
all individuals: 302
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
all individuals: 848
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 173
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40910
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.637594513803411e-4
allele num: 11374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2498
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.00275e5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 2.25e1
variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 272
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.549979600163199e-5
allele num: 39216
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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Other
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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VQSLOD
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FS
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele num: 5394
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East Asian
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African
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European (Non-Finnish)
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allele num: 38488
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Other
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South Asian
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QD
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ReadPosRankSum
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DP
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MQRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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VQSLOD
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MQ
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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European (Non-Finnish)
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num of homozygotes: 0

Other
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East Asian
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FS
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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DP
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MQRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 5530
num of homozygotes: 0

South Asian
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European (Non-Finnish)
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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Other
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FS
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MQ
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DP
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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Latino
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East Asian
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European (Finnish)
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Other
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FS
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MQ
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QD
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ReadPosRankSum
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InbreedingCoeff
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DP
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MQRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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South Asian
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European (Finnish)
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East Asian
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European (Non-Finnish)
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MQ
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VQSLOD
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InbreedingCoeff
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MQRankSum
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QD
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FS
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ReadPosRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 7.063144511936714e-5
allele num: 28316
num of homozygotes: 0

Latino
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Other
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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VQSLOD
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MQRankSum
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FS
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ClippingRankSum
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ReadPosRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele num: 4880
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South Asian
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European (Non-Finnish)
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Other
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European (Finnish)
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DP
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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QD
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MQRankSum
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MQ
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ReadPosRankSum
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BaseQRankSum
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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African
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Latino
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Other
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European (Non-Finnish)
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allele num: 21990
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South Asian
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VQSLOD
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InbreedingCoeff
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MQ
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BaseQRankSum
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FS
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ReadPosRankSum
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DP
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ClippingRankSum
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Latino
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Other
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African
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East Asian
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European (Non-Finnish)
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allele num: 21514
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BaseQRankSum
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VQSLOD
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FS
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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DP
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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African
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East Asian
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Latino
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European (Non-Finnish)
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Other
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FS
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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MQ
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DP
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 3630
num of homozygotes: 0

Latino
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European (Non-Finnish)
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Other
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South Asian
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East Asian
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European (Finnish)
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DP
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QD
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InbreedingCoeff
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VQSLOD
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MQRankSum
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ReadPosRankSum
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FS
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ClippingRankSum
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MQ
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BaseQRankSum
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