17-40459430-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459430
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459430
    reference: chr 17
allele count: 5
allele frequency: 4.393595894623996e-5
allele num: 113802
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1598C>T
  hgvsp: ENSP00000465437.1:p.Pro533Leu
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1691C>T
  hgvsp: ENSP00000341208.4:p.Pro564Leu
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1601C>T
  hgvsp: ENSP00000443107.1:p.Pro534Leu
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.155C>T
  hgvsp: ENSP00000466320.1:p.Pro52Leu
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.345C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1691C>T
  hgvsp: ENSP00000400320.2:p.Pro564Leu
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1691C>T
  hgvsp: ENSP00000468749.1:p.Pro564Leu
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.343C>T
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3634
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35244
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9580
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4113
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36785
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 1
hgvs: p.Pro564Leu
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

17-40459431-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459431
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459431
    reference: chr 17
allele count: 4
allele frequency: 3.494853827738655e-5
allele num: 114454
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1599G>A
  hgvsp: ENST00000588868.1:c.1599G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1692G>A
  hgvsp: ENST00000590949.1:c.1692G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1692G>A
  hgvsp: ENST00000345506.4:c.1692G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1602G>A
  hgvsp: ENST00000546010.2:c.1602G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.344G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1692G>A
  hgvsp: ENST00000452307.2:c.1692G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.346G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.156G>A
  hgvsp: ENST00000587646.1:c.156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37530
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4131
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5583
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro564Pro
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-40459445-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459445
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459445
    reference: chr 17
allele count: 1
allele frequency: 8.48838788537281e-6
allele num: 117808
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1616C>A
  hgvsp: ENSP00000443107.1:p.Thr539Asn
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.360C>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1706C>A
  hgvsp: ENSP00000341208.4:p.Thr569Asn
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.358C>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.170C>A
  hgvsp: ENSP00000466320.1:p.Thr57Asn
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1706C>A
  hgvsp: ENSP00000400320.2:p.Thr569Asn
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1706C>A
  hgvsp: ENSP00000468749.1:p.Thr569Asn
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1613C>A
  hgvsp: ENSP00000465437.1:p.Thr538Asn
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36692
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr569Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

17-40459446-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459446
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459446
    reference: chr 17
allele count: 15
allele frequency: 1.271100264388855e-4
allele num: 118008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.359C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1707C>T
  hgvsp: ENST00000452307.2:c.1707C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1617C>T
  hgvsp: ENST00000546010.2:c.1617C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.361C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1707C>T
  hgvsp: ENST00000345506.4:c.1707C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1707C>T
  hgvsp: ENST00000590949.1:c.1707C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.171C>T
  hgvsp: ENST00000587646.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1614C>T
  hgvsp: ENST00000588868.1:c.1614C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36704
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11100
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4162
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6196
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr569Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

17-40459447-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459447
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459447
    reference: chr 17
allele count: 1
allele frequency: 8.462957634434082e-6
allele num: 118162
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1708T>C
  hgvsp: ENSP00000400320.2:p.Phe570Leu
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.360T>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.172T>C
  hgvsp: ENSP00000466320.1:p.Phe58Leu
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1618T>C
  hgvsp: ENSP00000443107.1:p.Phe540Leu
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1708T>C
  hgvsp: ENSP00000341208.4:p.Phe570Leu
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1615T>C
  hgvsp: ENSP00000465437.1:p.Phe539Leu
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1708T>C
  hgvsp: ENSP00000468749.1:p.Phe570Leu
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.362T>C
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4154
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6259
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Phe570Leu
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

17-40459449-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459449
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459449
    reference: chr 17
allele count: 1
allele frequency: 8.440813019110001e-6
allele num: 118472
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.364C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.174C>G
  hgvsp: ENSP00000466320.1:p.Phe58Leu
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1620C>G
  hgvsp: ENSP00000443107.1:p.Phe540Leu
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.362C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1710C>G
  hgvsp: ENSP00000400320.2:p.Phe570Leu
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1710C>G
  hgvsp: ENSP00000341208.4:p.Phe570Leu
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1617C>G
  hgvsp: ENSP00000465437.1:p.Phe539Leu
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1710C>G
  hgvsp: ENSP00000468749.1:p.Phe570Leu
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36986
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2062
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4154
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Phe570Leu
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

17-40459465-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459465
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459465
    reference: chr 17
allele count: 1
allele frequency: 8.349615082744685e-6
allele num: 119766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1726G>A
  hgvsp: ENSP00000468749.1:p.Gly576Arg
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1726G>A
  hgvsp: ENSP00000341208.4:p.Gly576Arg
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.190G>A
  hgvsp: ENSP00000466320.1:p.Gly64Arg
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1726G>A
  hgvsp: ENSP00000400320.2:p.Gly576Arg
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1633G>A
  hgvsp: ENSP00000465437.1:p.Gly545Arg
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.378G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.380G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1636G>A
  hgvsp: ENSP00000443107.1:p.Gly546Arg
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12098
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4162
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly576Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

17-40459470-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459470
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459470
    reference: chr 17
allele count: 2
allele frequency: 1.667194611627015e-5
allele num: 119962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.195G>A
  hgvsp: ENST00000587646.1:c.195G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1731G>A
  hgvsp: ENST00000345506.4:c.1731G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1731G>A
  hgvsp: ENST00000590949.1:c.1731G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.383G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1641G>A
  hgvsp: ENST00000546010.2:c.1641G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.385G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1731G>A
  hgvsp: ENST00000452307.2:c.1731G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1638G>A
  hgvsp: ENST00000588868.1:c.1638G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val577Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

17-40459479-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459479
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459479
    reference: chr 17
allele count: 1
allele frequency: 8.317253310266817e-6
allele num: 120232
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1740G>C
  hgvsp: ENST00000452307.2:c.1740G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.392G>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.204G>C
  hgvsp: ENST00000587646.1:c.204G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1740G>C
  hgvsp: ENST00000345506.4:c.1740G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1650G>C
  hgvsp: ENST00000546010.2:c.1650G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.394G>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1740G>C
  hgvsp: ENST00000590949.1:c.1740G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1647G>C
  hgvsp: ENST00000588868.1:c.1647G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40602
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val580Val
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

17-40459480-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459480
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459480
    reference: chr 17
allele count: 1
allele frequency: 8.314487162431821e-6
allele num: 120272
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.205T>C
  hgvsp: ENST00000587646.1:c.205T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1741T>C
  hgvsp: ENST00000345506.4:c.1741T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.395T>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1648T>C
  hgvsp: ENST00000588868.1:c.1648T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1741T>C
  hgvsp: ENST00000452307.2:c.1741T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1651T>C
  hgvsp: ENST00000546010.2:c.1651T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.393T>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1741T>C
  hgvsp: ENST00000590949.1:c.1741T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4172
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2193
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6793
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu581Leu
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

17-40459497-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459497
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459496
    reference: chr 17
allele count: 1
allele frequency: 8.294349888855711e-6
allele num: 120564
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.226delC
  hgvsp: ENSP00000466320.1:p.His76ThrfsTer8
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1762delC
  hgvsp: ENSP00000400320.2:p.His588ThrfsTer8
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.414delC
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1762delC
  hgvsp: ENSP00000341208.4:p.His588ThrfsTer8
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1669delC
  hgvsp: ENSP00000465437.1:p.His557ThrfsTer8
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1672delC
  hgvsp: ENSP00000443107.1:p.His558ThrfsTer8
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1762delC
  hgvsp: ENSP00000468749.1:p.His588ThrfsTer8
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.416delC
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1381
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4177
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2209
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His588ThrfsTer8
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: GC
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

17-40459511-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459511
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459511
    reference: chr 17
allele count: 1
allele frequency: 8.284866862189524e-6
allele num: 120702
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1679A>G
  hgvsp: ENSP00000465437.1:p.Asp560Gly
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1772A>G
  hgvsp: ENSP00000468749.1:p.Asp591Gly
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.236A>G
  hgvsp: ENSP00000466320.1:p.Asp79Gly
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1682A>G
  hgvsp: ENSP00000443107.1:p.Asp561Gly
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.424A>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1772A>G
  hgvsp: ENSP00000400320.2:p.Asp591Gly
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1772A>G
  hgvsp: ENSP00000341208.4:p.Asp591Gly
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.426A>G
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13557
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4180
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39530
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6944
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp591Gly
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

17-40459523-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459523
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459523
    reference: chr 17
allele count: 3
allele frequency: 2.484760137821362e-5
allele num: 120736
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1682+9C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.239+9C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.427+9C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1685+9C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1775+9C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.429+9C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1775+9C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1775+9C>T
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13951
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5660
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38629
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2262
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

17-40459524-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459524
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459524
    reference: chr 17
allele count: 5
allele frequency: 4.141609926610672e-5
allele num: 120726
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.427+10G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1682+10G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1775+10G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.429+10G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.239+10G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1775+10G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1685+10G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1775+10G>A
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33399
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4194
  bin: 9.75e1
  variant carriers: 5
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

17-40459530-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459530
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459530
    reference: chr 17
allele count: 1
allele frequency: 8.275131574592036e-6
allele num: 120844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1775+16T>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1685+16T>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1682+16T>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1775+16T>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.239+16T>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.427+16T>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1775+16T>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.429+16T>A
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2412
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

17-40459534-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459534
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459534
    reference: chr 17
allele count: 1
allele frequency: 8.272530236098013e-6
allele num: 120882
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1775+20G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.239+20G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.427+20G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.429+20G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1775+20G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1682+20G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1685+20G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1775+20G>A
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32964
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2419
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38717
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

17-40459541-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459541
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459541
    reference: chr 17
allele count: 1
allele frequency: 8.270751315049459e-6
allele num: 120908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1775+27G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1775+27G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.239+27G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1682+27G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1685+27G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.427+27G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1775+27G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.429+27G>A
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7298
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD

17-40459543-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459543
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459543
    reference: chr 17
allele count: 1
allele frequency: 8.269930532583527e-6
allele num: 120920
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.429+29G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1775+29G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1775+29G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.427+29G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1682+29G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1775+29G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1685+29G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.239+29G>T
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1534
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

17-40459544-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459544
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459544
    reference: chr 17
allele count: 1
allele frequency: 8.269109913008963e-6
allele num: 120932
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.429+30C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1775+30C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1775+30C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1682+30C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.427+30C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.239+30C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1685+30C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1775+30C>G
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2547
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4224
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

17-40459553-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459553
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459553
    reference: chr 17
allele count: 2
allele frequency: 1.652428243303535e-5
allele num: 121034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1775+39G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.427+39G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1776-29G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1685+39G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1775+39G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1682+39G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.429+39G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.239+39G>A
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14990
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6454
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38582
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff

17-40459553-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459553
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459553
    reference: chr 17
allele count: 1
allele frequency: 8.262141216517673e-6
allele num: 121034
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1682+39G>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1775+39G>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1776-29G>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.427+39G>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1775+39G>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.429+39G>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1685+39G>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.239+39G>C
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7516
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4241
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

17-40459555-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459555
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459555
    reference: chr 17
allele count: 4
allele frequency: 3.305074942574323e-5
allele num: 121026
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1682+41C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1775+41C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.239+41C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1776-27C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.427+41C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1775+41C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1685+41C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.429+41C>T
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15017
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38512
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum

17-40459556-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459556
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459556
    reference: chr 17
allele count: 4
allele frequency: 3.305894409732553e-5
allele num: 120996
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1685+42G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.239+42G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1775+42G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1775+42G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1776-26G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.427+42G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.429+42G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1682+42G>A
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15039
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6634
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2682
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-40459556-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459556
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459556
    reference: chr 17
allele count: 8
allele frequency: 6.611788819465106e-5
allele num: 120996
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1775+42G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1682+42G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1685+42G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.429+42G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.427+42G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1775+42G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1776-26G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.239+42G>T
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6634
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15039
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2605
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4262
  bin: 9.75e1
  variant carriers: 8
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

17-40459558-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459558
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459558
    reference: chr 17
allele count: 56
allele frequency: 4.625041295011562e-4
allele num: 121080
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1775+44A>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1776-24A>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.239+44A>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1775+44A>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.427+44A>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1682+44A>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.429+44A>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1685+44A>G
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31983
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15122
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6637
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7564
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38653
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

17-40459562-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459562
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459562
    reference: chr 17
allele count: 24511
allele frequency: 2.026606915482943e-1
allele num: 120946
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.427+48A>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1685+48A>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1682+48A>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1776-20A>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1775+48A>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.429+48A>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.239+48A>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1775+48A>G
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.25e1
  variant carriers: 300
genotype depth: GenotypeDepth
  all individuals: 11952
  bin: 2.75e1
  variant carriers: 1525
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.75e1
  variant carriers: 344
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 232
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.25e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 1.75e1
  variant carriers: 339
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6596
  bin: 3.25e1
  variant carriers: 2352
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 9.75e1
  variant carriers: 2547
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 3.75e1
  variant carriers: 2789
genotype depth: GenotypeDepth
  all individuals: 22186
  bin: 2.25e1
  variant carriers: 857
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 5.25e1
  variant carriers: 1811
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.25e1
  variant carriers: 447
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 6.25e1
  variant carriers: 959
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 4.25e1
  variant carriers: 2703
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.75e1
  variant carriers: 236
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 5.75e1
  variant carriers: 1255
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 4.75e1
  variant carriers: 2276
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 6.75e1
  variant carriers: 666
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.25e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 8.25e1
  variant carriers: 122
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.25e1
  variant carriers: 8
num of homozygotes: 2783
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

17-40459572-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459572
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459572
    reference: chr 17
allele count: 9
allele frequency: 7.471111701421171e-5
allele num: 120464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.240-39T>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1683-39T>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1776-39T>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1686-39T>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1776-39T>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1776-10T>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.428-39T>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.430-39T>A
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2869
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29298
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ

17-40459574-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459574
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459574
    reference: chr 17
allele count: 1302
allele frequency: 1.174348335888879e-2
allele num: 110870
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.240-37T>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1683-37T>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1776-8T>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.430-37T>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1776-37T>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1686-37T>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1776-37T>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.428-37T>G
  variant of: http://identifiers.org/hgnc/11366
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 5.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 20718
  bin: 2.25e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 4.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 9.75e1
  variant carriers: 160
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 4.25e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 5.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7969
  bin: 3.25e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 6.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 1.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 12820
  bin: 2.75e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 4478
  bin: 3.75e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 6.75e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 5.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 3.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 2.25e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 1.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 8.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.75e1
  variant carriers: 39
hgvs: c.1776-8T>G
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

17-40459576-GCCCAGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459576
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459570
    reference: chr 17
allele count: 16
allele frequency: 1.336742025498354e-4
allele num: 119694
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1776-34_1776-29delCCCAGT
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1686-34_1686-29delCCCAGT
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.430-34_430-29delCCCAGT
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.240-34_240-29delCCCAGT
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1683-34_1683-29delCCCAGT
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1776-34_1776-29delCCCAGT
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.428-34_428-29delCCCAGT
  variant of: http://identifiers.org/hgnc/11366
canonical: false
consequence: splice acceptor
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8269
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28651
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1776-5_1776delCCCAGT
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: GCCCAGT
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/17-40459577-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459577
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459577
    reference: chr 17
allele count: 1
allele frequency: 8.610742762670707e-6
allele num: 116134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1776-34C>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.428-34C>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.430-34C>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.240-34C>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1686-34C>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1776-34C>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1683-34C>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1776-5C>A
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13377
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6445
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum

17-40459577-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459577
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459577
    reference: chr 17
allele count: 411
allele frequency: 3.539015275457661e-3
allele num: 116134
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1776-34C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.430-34C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.428-34C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1776-34C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1686-34C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1683-34C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1776-5C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.240-34C>G
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 4.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 8323
  bin: 3.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 13377
  bin: 2.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 5.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 4.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 3.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 20971
  bin: 2.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 5.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6445
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28449
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 2.5e0
  variant carriers: 1
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

17-40459577-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459577
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459577
    reference: chr 17
allele count: 2
allele frequency: 1.722148552534141e-5
allele num: 116134
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1776-5C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.430-34C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1686-34C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1776-34C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1776-34C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.428-34C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.240-34C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1683-34C>T
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 8323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2551
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/17-40459580-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459580
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459580
    reference: chr 17
allele count: 2
allele frequency: 1.687906152417926e-5
allele num: 118490
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1776-2A>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1776-31A>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1776-31A>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1683-31A>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.240-31A>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1686-31A>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.428-31A>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.430-31A>C
  variant of: http://identifiers.org/hgnc/11366
canonical: false
consequence: splice acceptor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21035
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2961
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1776-2A>C
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

17-40459584-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459584
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459584
    reference: chr 17
allele count: 2
allele frequency: 1.652947204866277e-5
allele num: 120996
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1776-27G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1777+1G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.428-27G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1683-27G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1686-27G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.430-27G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1776-27G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.240-27G>A
  variant of: http://identifiers.org/hgnc/11366
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21148
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8466
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2780
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1777+1G>A
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

17-40459588-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459588
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459588
    reference: chr 17
allele count: 8
allele frequency: 6.611570247933885e-5
allele num: 121000
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1683-23C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1776-23C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1686-23C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1776-23C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1777+5C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.430-23C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.240-23C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.428-23C>G
  variant of: http://identifiers.org/hgnc/11366
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13827
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21164
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4666
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10220
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1777+5C>G
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

17-40459588-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459588
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459588
    reference: chr 17
allele count: 2
allele frequency: 1.652892561983471e-5
allele num: 121000
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1776-23C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.430-23C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1776-23C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.240-23C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1777+5C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.428-23C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1683-23C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1686-23C>T
  variant of: http://identifiers.org/hgnc/11366
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10220
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1777+5C>T
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

17-40459589-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459589
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459589
    reference: chr 17
allele count: 3
allele frequency: 2.479215906649257e-5
allele num: 121006
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1686-22G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1776-22G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.430-22G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1683-22G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.240-22G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.428-22G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1776-22G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1777+6G>A
  variant of: http://identifiers.org/hgnc/11366
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21232
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2388
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3133
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1777+6G>A
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

17-40459592-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459592
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459592
    reference: chr 17
allele count: 1
allele frequency: 8.263097008758882e-6
allele num: 121020
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.428-19C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1777+9C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1776-19C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1683-19C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1686-19C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1776-19C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.240-19C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.430-19C>T
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30412
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-40459597-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459597
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459597
    reference: chr 17
allele count: 9
allele frequency: 7.433716032047576e-5
allele num: 121070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1776-14C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1777+14C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1776-14C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.428-14C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.430-14C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1686-14C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.240-14C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1683-14C>T
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8641
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2412
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7131
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

17-40459600-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459600
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459600
    reference: chr 17
allele count: 1
allele frequency: 8.258729477057249e-6
allele num: 121084
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.430-11C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.240-11C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1686-11C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1777+17C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.428-11C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1683-11C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1776-11C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1776-11C>T
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7152
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

17-40459601-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459601
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459601
    reference: chr 17
allele count: 2
allele frequency: 1.651609493451368e-5
allele num: 121094
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1776-10G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1776-10G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1777+18G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1686-10G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.428-10G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.240-10G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1683-10G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.430-10G>A
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14058
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10224
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

17-40459629-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459629
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459629
    reference: chr 17
allele count: 66
allele frequency: 5.441234665611396e-4
allele num: 121296
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.446G>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1704G>C
  hgvsp: ENST00000546010.2:c.1704G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1794G>C
  hgvsp: ENST00000345506.4:c.1794G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1785G>C
  hgvsp: ENST00000452307.2:c.1785G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.258G>C
  hgvsp: ENST00000587646.1:c.258G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1794G>C
  hgvsp: ENST00000590949.1:c.1794G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1701G>C
  hgvsp: ENST00000588868.1:c.1701G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.448G>C
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4715
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1740
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3221
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31198
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10289
  bin: 9.75e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7248
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val598Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

17-40459638-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459638
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459638
    reference: chr 17
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.457A>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1803A>G
  hgvsp: ENST00000345506.4:c.1803A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.455A>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1794A>G
  hgvsp: ENST00000452307.2:c.1794A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1710A>G
  hgvsp: ENST00000588868.1:c.1710A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1803A>G
  hgvsp: ENST00000590949.1:c.1803A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1713A>G
  hgvsp: ENST00000546010.2:c.1713A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.267A>G
  hgvsp: ENST00000587646.1:c.267A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2881
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln601Gln
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/17-40459644-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459644
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459644
    reference: chr 17
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1719C>A
  hgvsp: ENST00000546010.2:c.1719C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1716C>A
  hgvsp: ENST00000588868.1:c.1716C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.273C>A
  hgvsp: ENST00000587646.1:c.273C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.461C>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1809C>A
  hgvsp: ENST00000345506.4:c.1809C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1800C>A
  hgvsp: ENST00000452307.2:c.1800C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1809C>A
  hgvsp: ENST00000590949.1:c.1809C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.463C>A
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3240
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala603Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

17-40459647-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459647
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459647
    reference: chr 17
allele count: 2
allele frequency: 1.648396933981703e-5
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1803C>T
  hgvsp: ENST00000452307.2:c.1803C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1719C>T
  hgvsp: ENST00000588868.1:c.1719C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.466C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1722C>T
  hgvsp: ENST00000546010.2:c.1722C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.276C>T
  hgvsp: ENST00000587646.1:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.464C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1812C>T
  hgvsp: ENST00000590949.1:c.1812C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1812C>T
  hgvsp: ENST00000345506.4:c.1812C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4734
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10251
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3238
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2885
  bin: 7.25e1
  variant carriers: 0
hgvs: p.His604His
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

17-40459648-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459648
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459648
    reference: chr 17
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1723G>A
  hgvsp: ENSP00000443107.1:p.Asp575Asn
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1813G>A
  hgvsp: ENSP00000468749.1:p.Asp605Asn
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1804G>A
  hgvsp: ENSP00000400320.2:p.Asp602Asn
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1720G>A
  hgvsp: ENSP00000465437.1:p.Asp574Asn
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1813G>A
  hgvsp: ENSP00000341208.4:p.Asp605Asn
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.277G>A
  hgvsp: ENSP00000466320.1:p.Asp93Asn
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.467G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.465G>A
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31296
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp605Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD

17-40459657-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459657
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459657
    reference: chr 17
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.474A>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1729A>G
  hgvsp: ENSP00000465437.1:p.Ile577Val
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.286A>G
  hgvsp: ENSP00000466320.1:p.Ile96Val
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1732A>G
  hgvsp: ENSP00000443107.1:p.Ile578Val
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.476A>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1822A>G
  hgvsp: ENSP00000468749.1:p.Ile608Val
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1813A>G
  hgvsp: ENSP00000400320.2:p.Ile605Val
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1822A>G
  hgvsp: ENSP00000341208.4:p.Ile608Val
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1748
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10253
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile608Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/17-40459668-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459668
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459668
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 121336
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1833C>A
  hgvsp: ENST00000345506.4:c.1833C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1740C>A
  hgvsp: ENST00000588868.1:c.1740C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1743C>A
  hgvsp: ENST00000546010.2:c.1743C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.485C>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.297C>A
  hgvsp: ENST00000587646.1:c.297C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1824C>A
  hgvsp: ENST00000452307.2:c.1824C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1833C>A
  hgvsp: ENST00000590949.1:c.1833C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.487C>A
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro611Pro
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD

17-40459668-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459668
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459668
    reference: chr 17
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.297C>G
  hgvsp: ENST00000587646.1:c.297C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1824C>G
  hgvsp: ENST00000452307.2:c.1824C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.487C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1740C>G
  hgvsp: ENST00000588868.1:c.1740C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1833C>G
  hgvsp: ENST00000590949.1:c.1833C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1833C>G
  hgvsp: ENST00000345506.4:c.1833C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1743C>G
  hgvsp: ENST00000546010.2:c.1743C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.485C>G
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7261
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10258
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro611Pro
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

17-40459668-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459668
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459668
    reference: chr 17
allele count: 5
allele frequency: 4.120788554097712e-5
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.485C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1833C>T
  hgvsp: ENST00000590949.1:c.1833C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1740C>T
  hgvsp: ENST00000588868.1:c.1740C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1833C>T
  hgvsp: ENST00000345506.4:c.1833C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1824C>T
  hgvsp: ENST00000452307.2:c.1824C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1743C>T
  hgvsp: ENST00000546010.2:c.1743C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.297C>T
  hgvsp: ENST00000587646.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.487C>T
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2467
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31293
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2894
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro611Pro
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

17-40459671-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459671
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459671
    reference: chr 17
allele count: 7
allele frequency: 5.768153202149049e-5
allele num: 121356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.488C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1746C>T
  hgvsp: ENST00000546010.2:c.1746C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1836C>T
  hgvsp: ENST00000590949.1:c.1836C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1743C>T
  hgvsp: ENST00000588868.1:c.1743C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1827C>T
  hgvsp: ENST00000452307.2:c.1827C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.300C>T
  hgvsp: ENST00000587646.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.490C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1836C>T
  hgvsp: ENST00000345506.4:c.1836C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8884
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31293
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp612Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ

17-40459674-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459674
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459674
    reference: chr 17
allele count: 3
allele frequency: 2.472065658063878e-5
allele num: 121356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1749G>T
  hgvsp: ENST00000546010.2:c.1749G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1830G>T
  hgvsp: ENST00000452307.2:c.1830G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1839G>T
  hgvsp: ENST00000345506.4:c.1839G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.303G>T
  hgvsp: ENST00000587646.1:c.303G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.493G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1746G>T
  hgvsp: ENST00000588868.1:c.1746G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1839G>T
  hgvsp: ENST00000590949.1:c.1839G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.491G>T
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21435
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31299
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly613Gly
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

17-40459677-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459677
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459677
    reference: chr 17
allele count: 2
allele frequency: 1.648070932972955e-5
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1833C>T
  hgvsp: ENST00000452307.2:c.1833C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.496C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1752C>T
  hgvsp: ENST00000546010.2:c.1752C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.306C>T
  hgvsp: ENST00000587646.1:c.306C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1842C>T
  hgvsp: ENST00000590949.1:c.1842C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1749C>T
  hgvsp: ENST00000588868.1:c.1749C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1842C>T
  hgvsp: ENST00000345506.4:c.1842C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.494C>T
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7268
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2479
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr614Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

17-40459688-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459688
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459688
    reference: chr 17
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1763G>A
  hgvsp: ENSP00000443107.1:p.Arg588His
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.505G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1844G>A
  hgvsp: ENSP00000400320.2:p.Arg615His
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.507G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1760G>A
  hgvsp: ENSP00000465437.1:p.Arg587His
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.317G>A
  hgvsp: ENSP00000466320.1:p.Arg106His
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1853G>A
  hgvsp: ENSP00000341208.4:p.Arg618His
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1853G>A
  hgvsp: ENSP00000468749.1:p.Arg618His
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7245
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2898
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31266
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3245
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg618His
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

17-40459701-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459701
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459701
    reference: chr 17
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.520A>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1866A>G
  hgvsp: ENST00000345506.4:c.1866A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.330A>G
  hgvsp: ENST00000587646.1:c.330A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1857A>G
  hgvsp: ENST00000452307.2:c.1857A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1773A>G
  hgvsp: ENST00000588868.1:c.1773A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.518A>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1776A>G
  hgvsp: ENST00000546010.2:c.1776A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1866A>G
  hgvsp: ENST00000590949.1:c.1866A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8879
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2480
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10267
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser622Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

17-40459705-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459705
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459705
    reference: chr 17
allele count: 3
allele frequency: 2.473533194815474e-5
allele num: 121284
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1780A>G
  hgvsp: ENSP00000443107.1:p.Ile594Val
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1870A>G
  hgvsp: ENSP00000468749.1:p.Ile624Val
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.522A>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.334A>G
  hgvsp: ENSP00000466320.1:p.Ile112Val
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1777A>G
  hgvsp: ENSP00000465437.1:p.Ile593Val
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.524A>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1861A>G
  hgvsp: ENSP00000400320.2:p.Ile621Val
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1870A>G
  hgvsp: ENSP00000341208.4:p.Ile624Val
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21333
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile624Val
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

17-40459707-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459707
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459707
    reference: chr 17
allele count: 11
allele frequency: 9.069920844327176e-5
allele num: 121280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.336C>T
  hgvsp: ENST00000587646.1:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.524C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1782C>T
  hgvsp: ENST00000546010.2:c.1782C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1872C>T
  hgvsp: ENST00000590949.1:c.1872C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.526C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1863C>T
  hgvsp: ENST00000452307.2:c.1863C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1779C>T
  hgvsp: ENST00000588868.1:c.1779C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1872C>T
  hgvsp: ENST00000345506.4:c.1872C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8881
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2475
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10274
  bin: 9.75e1
  variant carriers: 11
hgvs: p.Ile624Ile
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

17-40459708-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459708
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459708
    reference: chr 17
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.527G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1873G>A
  hgvsp: ENSP00000341208.4:p.Gly625Arg
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1864G>A
  hgvsp: ENSP00000400320.2:p.Gly622Arg
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1873G>A
  hgvsp: ENSP00000468749.1:p.Gly625Arg
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1780G>A
  hgvsp: ENSP00000465437.1:p.Gly594Arg
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1783G>A
  hgvsp: ENSP00000443107.1:p.Gly595Arg
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.337G>A
  hgvsp: ENSP00000466320.1:p.Gly113Arg
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.525G>A
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14429
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3241
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2890
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly625Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

17-40459737-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459737
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459737
    reference: chr 17
allele count: 23853
allele frequency: 1.978713873311876e-1
allele num: 120548
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1902C>T
  hgvsp: ENST00000345506.4:c.1902C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.366C>T
  hgvsp: ENST00000587646.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1812C>T
  hgvsp: ENST00000546010.2:c.1812C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1809C>T
  hgvsp: ENST00000588868.1:c.1809C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.556C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.554C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1902C>T
  hgvsp: ENST00000590949.1:c.1902C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1893C>T
  hgvsp: ENST00000452307.2:c.1893C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 7.25e1
  variant carriers: 1279
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 1.25e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 1.75e1
  variant carriers: 295
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 4.75e1
  variant carriers: 1963
genotype depth: GenotypeDepth
  all individuals: 11926
  bin: 2.75e1
  variant carriers: 947
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 5.75e1
  variant carriers: 1906
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 8.75e1
  variant carriers: 646
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 9.75e1
  variant carriers: 1249
genotype depth: GenotypeDepth
  all individuals: 20275
  bin: 2.25e1
  variant carriers: 631
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 6.25e1
  variant carriers: 1708
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 3.75e1
  variant carriers: 1537
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 3.25e1
  variant carriers: 1209
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 7.75e1
  variant carriers: 1037
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 4.25e1
  variant carriers: 1799
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 6.75e1
  variant carriers: 1503
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 9.25e1
  variant carriers: 521
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 5.25e1
  variant carriers: 2030
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 8.25e1
  variant carriers: 847
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 7.25e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 26994
  bin: 6.25e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 7.75e1
  variant carriers: 78
hgvs: p.Asp634Asp
num of homozygotes: 2644
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

17-40459741-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459741
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459741
    reference: chr 17
allele count: 3
allele frequency: 2.507354907729339e-5
allele num: 119648
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1813C>T
  hgvsp: ENSP00000465437.1:p.Pro605Ser
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1906C>T
  hgvsp: ENSP00000468749.1:p.Pro636Ser
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.558C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.370C>T
  hgvsp: ENSP00000466320.1:p.Pro124Ser
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1906C>T
  hgvsp: ENSP00000341208.4:p.Pro636Ser
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.560C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1897C>T
  hgvsp: ENSP00000400320.2:p.Pro633Ser
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1816C>T
  hgvsp: ENSP00000443107.1:p.Pro606Ser
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3311
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro636Ser
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

17-40459747-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459747
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459747
    reference: chr 17
allele count: 119
allele frequency: 9.975856750050298e-4
allele num: 119288
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1906+6T>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.560+6T>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1906+6T>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.370+6T>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.558+6T>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1816+6T>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1813+6T>C
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1897+6T>C
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21133
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8899
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16022
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33554
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
hgvs: c.1906+6T>C
num of homozygotes: 1
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-40459748-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459748
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459748
    reference: chr 17
allele count: 1
allele frequency: 8.386025527061704e-6
allele num: 119246
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1906+7G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.370+7G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.558+7G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1906+7G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1897+7G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1816+7G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.560+7G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1813+7G>A
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2742
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3550
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1906+7G>A
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

17-40459751-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459751
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459751
    reference: chr 17
allele count: 3
allele frequency: 2.518595631076112e-5
allele num: 119114
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1906+10C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.370+10C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1897+10C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1906+10C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1813+10C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1816+10C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.558+10C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.560+10C>T
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4092
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2719
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

17-40459759-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459759
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459759
    reference: chr 17
allele count: 1
allele frequency: 8.431703204047217e-6
allele num: 118600
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.370+18C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1906+18C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1816+18C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1897+18C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1906+18C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.558+18C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1813+18C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.560+18C>T
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20751
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3268
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3538
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7633
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

17-40459769-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459769
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459769
    reference: chr 17
allele count: 1
allele frequency: 8.495599279573181e-6
allele num: 117708
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1906+28G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.370+28G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1813+28G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1906+28G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.560+28G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1897+28G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.558+28G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1816+28G>T
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3524
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3129
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3815
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

17-40459773-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459773
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459773
    reference: chr 17
allele count: 5
allele frequency: 4.256478360064017e-5
allele num: 117468
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.558+32C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.560+32C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1906+32C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1897+32C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.370+32C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1813+32C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1906+32C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1816+32C>T
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14092
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3113
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

17-40459777-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459777
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459777
    reference: chr 17
allele count: 1
allele frequency: 8.537376634907625e-6
allele num: 117132
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1906+36G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1816+36G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.558+36G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.370+36G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1897+36G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1906+36G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1813+36G>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.560+36G>T
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7948
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1686
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2125
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1335
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

17-40459780-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459780
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459780
    reference: chr 17
allele count: 1
allele frequency: 8.565750702391558e-6
allele num: 116744
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1906+39C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1816+39C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1897+39C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.558+39C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.370+39C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1813+39C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.560+39C>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1906+39C>G
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3062
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1495
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

17-40459780-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459780
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459780
    reference: chr 17
allele count: 1
allele frequency: 8.565750702391558e-6
allele num: 116744
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.560+39C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.558+39C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1906+39C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1816+39C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1897+39C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1813+39C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.370+39C>T
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1906+39C>T
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1305
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

17-40459781-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40459781
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40459781
    reference: chr 17
allele count: 6
allele frequency: 5.14765181283138e-5
allele num: 116558
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1906+40G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.560+40G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1906+40G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1813+40G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.370+40G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.558+40G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1897+40G>A
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1816+40G>A
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4045
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7738
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3048
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6793
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3971
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28586
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

17-40460148-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40460148
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 40460148
    reference: chr 17
allele count: 1
allele frequency: 8.425735566714975e-6
allele num: 118684
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000591556
  gene symbol: STAT5A
  hgvsc: ENST00000591556.1:n.559-48T>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000465437
  ensembl transcript: ENST00000588868
  gene symbol: STAT5A
  hgvsc: ENST00000588868.1:c.1814-48T>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000468749
  ensembl transcript: ENST00000590949
  gene symbol: STAT5A
  hgvsc: ENST00000590949.1:c.1907-48T>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000443107
  ensembl transcript: ENST00000546010
  gene symbol: STAT5A
  hgvsc: ENST00000546010.2:c.1817-48T>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000400320
  ensembl transcript: ENST00000452307
  gene symbol: STAT5A
  hgvsc: ENST00000452307.2:c.1898-48T>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000466320
  ensembl transcript: ENST00000587646
  gene symbol: STAT5A
  hgvsc: ENST00000587646.1:c.371-48T>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl protein: ENSP00000341208
  ensembl transcript: ENST00000345506
  gene symbol: STAT5A
  hgvsc: ENST00000345506.4:c.1907-48T>G
  variant of: http://identifiers.org/hgnc/11366
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000126561
  ensembl transcript: ENST00000468096
  gene symbol: STAT5A
  hgvsc: ENST00000468096.1:n.561-48T>G
  variant of: http://identifiers.org/hgnc/11366
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14601
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 4123
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 299
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1737
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1775
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5449
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9544
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.27762872109365e-4
allele num: 15654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.782248294331442e-5
allele num: 62732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5940
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10808
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.496533e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.046e0

FS
type: SiteQuality
SIO_000300: 1.147e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.11e-1

QD
type: SiteQuality
SIO_000300: 1.292e1

GenotypeQuality
all individuals: 3778
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1819
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1786
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.271455816910362e-4
allele num: 15730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9622
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.182736455463728e-5
allele num: 10890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.585690726880629e-5
allele num: 63064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5992
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

QD
type: SiteQuality
SIO_000300: 1.261e1

FS
type: SiteQuality
SIO_000300: 4.295e0

DP
type: SiteQuality
SIO_000300: 1.505905e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.01e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2026
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6175
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2006
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1278
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2026
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4148
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 39698
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.543019380323417e-5
allele num: 64808
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9976
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.374e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.552623e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.614e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.887e0

MQRankSum
type: SiteQuality
SIO_000300: -1.374e0

QD
type: SiteQuality
SIO_000300: 1.787e1

GenotypeQuality
all individuals: 316
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1918
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39731
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1275
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2005
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2036
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 15
allele frequency: 1.760150199483689e-3
allele num: 8522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16136
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.399e0

QD
type: SiteQuality
SIO_000300: 1.321e1

VQSLOD
type: SiteQuality
SIO_000300: 9.360000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.555853e6

FS
type: SiteQuality
SIO_000300: 3.554e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1832
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39943
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2055
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10012
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538935056940597e-5
allele num: 64980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6290
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.557679e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.246e0

QD
type: SiteQuality
SIO_000300: 1.244e1

MQRankSum
type: SiteQuality
SIO_000300: -2.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2028
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1670
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6283
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40298
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.824567596187787e-5
allele num: 11332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10052
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.638e1

FS
type: SiteQuality
SIO_000300: 5.385e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 1.562349e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 229
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2155
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40733
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6509
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.751969193068441e-5
allele num: 11426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

MQ
type: SiteQuality
SIO_000300: 5.838e1

MQRankSum
type: SiteQuality
SIO_000300: -7.46e-1

DP
type: SiteQuality
SIO_000300: 1.585772e6

QD
type: SiteQuality
SIO_000300: 1.006e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.569e0

VQSLOD
type: SiteQuality
SIO_000300: -2.315e0

GenotypeQuality
all individuals: 138
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2206
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4167
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1355
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
all individuals: 40645
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6669
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.03030303030303e-5
allele num: 66000
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.74e-1

FS
type: SiteQuality
SIO_000300: 3.144e0

QD
type: SiteQuality
SIO_000300: 1.077e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.48e-1

DP
type: SiteQuality
SIO_000300: 1.589898e6

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 774
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4171
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 229
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2225
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6764
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.099048548426445e-5
allele num: 16396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.632e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.0481e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.91e0

MQRankSum
type: SiteQuality
SIO_000300: -2.11e-1

DP
type: SiteQuality
SIO_000300: 1.595551e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.68e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

QD
type: SiteQuality
SIO_000300: 2.662e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511532996765319e-5
allele num: 66158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 9.79e-1

ReadPosRankSum
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QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -7.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.262e0

VQSLOD
type: SiteQuality
SIO_000300: 1.48e-1

DP
type: SiteQuality
SIO_000300: 1.595959e6

MQ
type: SiteQuality
SIO_000300: 5.909e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66292
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.026e1

VQSLOD
type: SiteQuality
SIO_000300: 3.61e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

QD
type: SiteQuality
SIO_000300: 9.76e0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.602822e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506704836522525e-5
allele num: 66370
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.85e-1

QD
type: SiteQuality
SIO_000300: 1.429e1

MQ
type: SiteQuality
SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0

MQRankSum
type: SiteQuality
SIO_000300: 2.39e-1

FS
type: SiteQuality
SIO_000300: 4.677e0

DP
type: SiteQuality
SIO_000300: 1.60691e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.76e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.674922600619196e-5
allele num: 10336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.012683397101799e-5
allele num: 66386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.301e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.453e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.613262e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.937608990505716e-4
allele num: 10322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.519569736961041e-5
allele num: 66378
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.392e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e-1

DP
type: SiteQuality
SIO_000300: 1.614714e6

FS
type: SiteQuality
SIO_000300: 1.742e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.45e0

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505026789476853e-5
allele num: 66444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.27e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.635e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.017e0

DP
type: SiteQuality
SIO_000300: 1.618097e6

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.068e1

MQRankSum
type: SiteQuality
SIO_000300: -4.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.5e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504619180885318e-5
allele num: 66462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.719e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 7.26e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66476
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6546
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10350
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East Asian
type: Population
allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.57e-1

ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 1.004e0

MQRankSum
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.101e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504121292341014e-5
allele num: 66484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.45e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.565e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.53e-1

QD
type: SiteQuality
SIO_000300: 1.503e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

DP
type: SiteQuality
SIO_000300: 1.629596e6

GenotypeQuality
all individuals: 2527
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7383
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38575
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66492
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.88e-1

FS
type: SiteQuality
SIO_000300: 5.712e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.21e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

DP
type: SiteQuality
SIO_000300: 1.630863e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.231e0

GenotypeQuality
all individuals: 436
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2597
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2657
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7516
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4241
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 684
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.314814814814815e-4
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66548
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.418e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

DP
type: SiteQuality
SIO_000300: 1.637669e6

QD
type: SiteQuality
SIO_000300: 1.651e1

FS
type: SiteQuality
SIO_000300: 3.137e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

GenotypeQuality
all individuals: 282
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38582
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2597
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2657
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502674761074713e-5
allele num: 66548
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.73e-1

DP
type: SiteQuality
SIO_000300: 1.637669e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

QD
type: SiteQuality
SIO_000300: 1.651e1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.418e0

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

FS
type: SiteQuality
SIO_000300: 3.137e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
all individuals: 232
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4242
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2666
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7496
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2605
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.011060351045924e-5
allele num: 66544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.443000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.414e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.026e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 1.3636e1

DP
type: SiteQuality
SIO_000300: 1.639421e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

GenotypeQuality
all individuals: 657
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4262
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 174
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2605
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7498
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38529
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.012325266796934e-5
allele num: 66530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.296e1

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.642633e6

MQRankSum
type: SiteQuality
SIO_000300: 5.02e-1

FS
type: SiteQuality
SIO_000300: 1.79e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

GenotypeQuality
all individuals: 38529
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2682
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7498
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66530
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.261403102570039e-4
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

QD
type: SiteQuality
SIO_000300: 1.296e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.947e1

MQRankSum
type: SiteQuality
SIO_000300: 5.02e-1

FS
type: SiteQuality
SIO_000300: 1.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

DP
type: SiteQuality
SIO_000300: 1.642633e6

GenotypeQuality
all individuals: 222
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4340
bin: 9.75e1
variant carriers: 55

GenotypeQuality
all individuals: 167
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2754
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1683
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2639
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 9.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.570383912248629e-4
allele num: 6564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 49
allele frequency: 7.36000961307378e-4
allele num: 66576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.92789666473877e-4
allele num: 10374
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.644239e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

FS
type: SiteQuality
SIO_000300: 1.766e0

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

QD
type: SiteQuality
SIO_000300: 1.543e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.012e0

GenotypeQuality
all individuals: 169
bin: 2.75e1
variant carriers: 13

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 26

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 11

GenotypeQuality
all individuals: 146
bin: 5.75e1
variant carriers: 50

GenotypeQuality
all individuals: 27273
bin: 6.25e1
variant carriers: 63

GenotypeQuality
all individuals: 1599
bin: 7.25e1
variant carriers: 60

GenotypeQuality
all individuals: 22067
bin: 9.75e1
variant carriers: 20856

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 9

GenotypeQuality
all individuals: 415
bin: 9.25e1
variant carriers: 133

GenotypeQuality
all individuals: 1591
bin: 7.75e1
variant carriers: 109

GenotypeQuality
all individuals: 5028
bin: 6.75e1
variant carriers: 76

GenotypeQuality
all individuals: 337
bin: 8.75e1
variant carriers: 87

Latino
type: Population
allele count: 938
allele frequency: 8.145189301840917e-2
allele num: 11516
num of homozygotes: 43

African
type: Population
allele count: 2747
allele frequency: 2.651032619185485e-1
allele num: 10362
num of homozygotes: 355

Other
type: Population
allele count: 184
allele frequency: 2.044444444444445e-1
allele num: 900
num of homozygotes: 18

South Asian
type: Population
allele count: 4902
allele frequency: 2.973432002911561e-1
allele num: 16486
num of homozygotes: 753

East Asian
type: Population
allele count: 2870
allele frequency: 3.341094295692666e-1
allele num: 8590
num of homozygotes: 446

European (Finnish)
type: Population
allele count: 1195
allele frequency: 1.82498472816127e-1
allele num: 6548
num of homozygotes: 109

European (Non-Finnish)
type: Population
allele count: 11675
allele frequency: 1.754478239961529e-1
allele num: 66544
num of homozygotes: 1059

MQ
type: SiteQuality
SIO_000300: 5.953e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.653e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.71e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

DP
type: SiteQuality
SIO_000300: 2.198503e6

GenotypeQuality
all individuals: 152
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2594
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6491
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1600
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2205
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10659
bin: 9.75e1
variant carriers: 9

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66142
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 8.773640085786703e-4
allele num: 10258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.194e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.79e-1

QD
type: SiteQuality
SIO_000300: 9.69e0

VQSLOD
type: SiteQuality
SIO_000300: -1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.67e-1

DP
type: SiteQuality
SIO_000300: 1.947516e6

MQRankSum
type: SiteQuality
SIO_000300: -5.08e-1

FS
type: SiteQuality
SIO_000300: 3.4157e1

MQ
type: SiteQuality
SIO_000300: 5.833e1

GenotypeQuality
all individuals: 331
bin: 5.25e1
variant carriers: 31

GenotypeQuality
all individuals: 245
bin: 3.25e1
variant carriers: 43

GenotypeQuality
all individuals: 27314
bin: 6.25e1
variant carriers: 40

GenotypeQuality
all individuals: 2427
bin: 7.25e1
variant carriers: 37

GenotypeQuality
all individuals: 2692
bin: 7.75e1
variant carriers: 35

GenotypeQuality
all individuals: 10161
bin: 9.75e1
variant carriers: 799

GenotypeQuality
all individuals: 140
bin: 7.5e0
variant carriers: 38

GenotypeQuality
all individuals: 4653
bin: 2.5e0
variant carriers: 23

GenotypeQuality
all individuals: 6052
bin: 6.75e1
variant carriers: 31

GenotypeQuality
all individuals: 1486
bin: 9.25e1
variant carriers: 20

GenotypeQuality
all individuals: 2078
bin: 8.25e1
variant carriers: 24

GenotypeQuality
all individuals: 233
bin: 2.75e1
variant carriers: 38

European (Finnish)
type: Population
allele count: 146
allele frequency: 2.683823529411765e-2
allele num: 5440
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.854958125986163e-4
allele num: 16478
num of homozygotes: 0

East Asian
type: Population
allele count: 48
allele frequency: 5.676442762535478e-3
allele num: 8456
num of homozygotes: 0

Other
type: Population
allele count: 12
allele frequency: 1.530612244897959e-2
allele num: 784
num of homozygotes: 0

African
type: Population
allele count: 217
allele frequency: 2.494252873563218e-2
allele num: 8700
num of homozygotes: 0

Latino
type: Population
allele count: 24
allele frequency: 2.129925452609159e-3
allele num: 11268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 847
allele frequency: 1.41771558650241e-2
allele num: 59744
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.771e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.103e0

DP
type: SiteQuality
SIO_000300: 2.000856e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.319e0

FS
type: SiteQuality
SIO_000300: 3.20516e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.02e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.761e2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.47e0

QD
type: SiteQuality
SIO_000300: 4.11e0

GenotypeQuality
all individuals: 10599
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 2672
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6685
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 7.84313725490196e-4
allele num: 10200
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.216175129218607e-4
allele num: 65780
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.607e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.75e0

VQSLOD
type: SiteQuality
SIO_000300: -6.242e1

MQRankSum
type: SiteQuality
SIO_000300: -2.11e0

DP
type: SiteQuality
SIO_000300: 1.928274e6

QD
type: SiteQuality
SIO_000300: 3.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.186e0

FS
type: SiteQuality
SIO_000300: 2.30587e2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

GenotypeQuality
all individuals: 2013
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2196
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28449
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2836
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10250
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 218
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2551
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1582
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.201923076923077e-3
allele num: 832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e0

FS
type: SiteQuality
SIO_000300: 1.97239e2

QD
type: SiteQuality
SIO_000300: 8.640000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

DP
type: SiteQuality
SIO_000300: 1.895791e6

MQ
type: SiteQuality
SIO_000300: 5.844e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.026e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.597e0

VQSLOD
type: SiteQuality
SIO_000300: -1.887e2

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-1

GenotypeQuality
all individuals: 167
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 321
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2551
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 154
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2196
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2836
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 361
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1169
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 362
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 10250
bin: 9.75e1
variant carriers: 392

GenotypeQuality
all individuals: 1582
bin: 9.25e1
variant carriers: 2

African
type: Population
allele count: 63
allele frequency: 6.525792417650715e-3
allele num: 9654
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.391876027236441e-4
allele num: 8518
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 6.009615384615385e-3
allele num: 832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 276
allele frequency: 4.335668729774734e-3
allele num: 63658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 52
allele frequency: 9.359251259899209e-3
allele num: 5556
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.249343832020997e-4
allele num: 11430
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.895791e6

FS
type: SiteQuality
SIO_000300: 1.97239e2

VQSLOD
type: SiteQuality
SIO_000300: -1.887e2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e0

MQ
type: SiteQuality
SIO_000300: 5.844e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.026e0

QD
type: SiteQuality
SIO_000300: 8.640000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.597e0

GenotypeQuality
all individuals: 28449
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10250
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1582
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2196
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2836
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6445
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.141788934619372e-5
allele num: 63658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

QD
type: SiteQuality
SIO_000300: 8.640000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.597e0

FS
type: SiteQuality
SIO_000300: 1.97239e2

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.026e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e0

MQ
type: SiteQuality
SIO_000300: 5.844e1

VQSLOD
type: SiteQuality
SIO_000300: -1.887e2

DP
type: SiteQuality
SIO_000300: 1.895791e6

GenotypeQuality
all individuals: 2639
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29196
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 10059
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1219
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6723
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2284
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10054
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.067202404686685e-5
allele num: 65206
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

VQSLOD
type: SiteQuality
SIO_000300: -3.158e0

DP
type: SiteQuality
SIO_000300: 1.875156e6

MQRankSum
type: SiteQuality
SIO_000300: 7.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

QD
type: SiteQuality
SIO_000300: 1.39e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.039e0

MQ
type: SiteQuality
SIO_000300: 5.808e1

GenotypeQuality
all individuals: 7021
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3124
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10215
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2396
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29944
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1707
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66482
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.313743637204998e-4
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.85e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -5.144e-1

FS
type: SiteQuality
SIO_000300: 2.473e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 1.875035e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e0

QD
type: SiteQuality
SIO_000300: 1.406e1

GenotypeQuality
all individuals: 1711
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2386
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2777
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7038
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30019
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.021199819576004e-5
allele num: 66510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.934984520123839e-4
allele num: 10336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-2

MQ
type: SiteQuality
SIO_000300: 5.935e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

DP
type: SiteQuality
SIO_000300: 1.877381e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.42e-1

FS
type: SiteQuality
SIO_000300: 1.745e0

MQRankSum
type: SiteQuality
SIO_000300: 4.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

QD
type: SiteQuality
SIO_000300: 1.296e1

GenotypeQuality
all individuals: 2777
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2386
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30019
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7038
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503533303262667e-5
allele num: 66510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-2

DP
type: SiteQuality
SIO_000300: 1.877381e6

FS
type: SiteQuality
SIO_000300: 1.745e0

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

MQRankSum
type: SiteQuality
SIO_000300: 4.68e-1

QD
type: SiteQuality
SIO_000300: 1.296e1

MQ
type: SiteQuality
SIO_000300: 5.935e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.42e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 297
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GenotypeQuality
all individuals: 2791
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.511278195488722e-5
allele num: 66500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.878385e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.62e-1

QD
type: SiteQuality
SIO_000300: 1.105e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.29e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503488092374308e-5
allele num: 66512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.74e-1

DP
type: SiteQuality
SIO_000300: 1.880729e6

FS
type: SiteQuality
SIO_000300: 1.962e0

QD
type: SiteQuality
SIO_000300: 1.732e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.31e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 3.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.559e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.83e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 10230
bin: 9.75e1
variant carriers: 9

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.041425595926869e-3
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.931e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.03e-1

FS
type: SiteQuality
SIO_000300: 3.189e0

MQRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.884369e6

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.743e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.223e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e-1

GenotypeQuality
all individuals: 145
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
all individuals: 1732
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502674761074713e-5
allele num: 66548
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.16e-1

DP
type: SiteQuality
SIO_000300: 1.886248e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.45e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.015e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

GenotypeQuality
all individuals: 2822
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66558
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.658103148541626e-5
allele num: 10354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.09e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

DP
type: SiteQuality
SIO_000300: 1.886583e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.860000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.323e0

QD
type: SiteQuality
SIO_000300: 9.93e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

East Asian
type: Population
allele count: 66
allele frequency: 7.633587786259542e-3
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.323e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.58e-1

DP
type: SiteQuality
SIO_000300: 1.896315e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

VQSLOD
type: SiteQuality
SIO_000300: 5.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.2e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513775355737209e-4
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.895e1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 5.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.296e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

South Asian
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allele count: 0
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allele num: 16510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.896664e6

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
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SIO_000300: -1.532e0

QD
type: SiteQuality
SIO_000300: 1.424e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998770504093322e-5
allele num: 66694
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African
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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DP
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FS
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MQ
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VQSLOD
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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DP
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FS
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MQ
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

FS
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SIO_000300: 0.0e0

InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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QD
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.897569e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.48e-1

DP
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 1.116e0

BaseQRankSum
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VQSLOD
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66692
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African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 5.3e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 1.728608470181504e-4
allele num: 11570
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.922337562475971e-4
allele num: 10404
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
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allele num: 66692
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Other
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MQRankSum
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MQ
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BaseQRankSum
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ReadPosRankSum
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QD
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VQSLOD
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FS
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ClippingRankSum
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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allele frequency: 8.994962820820341e-5
allele num: 66704
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East Asian
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Latino
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South Asian
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
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VQSLOD
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QD
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BaseQRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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South Asian
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Other
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Latino
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European (Non-Finnish)
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DP
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InbreedingCoeff
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MQ
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ReadPosRankSum
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MQRankSum
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FS
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VQSLOD
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BaseQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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Latino
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European (Finnish)
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East Asian
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Other
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African
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ClippingRankSum
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BaseQRankSum
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MQ
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FS
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InbreedingCoeff
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MQRankSum
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VQSLOD
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DP
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8654
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European (Finnish)
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Latino
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.196e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.52e-1

DP
type: SiteQuality
SIO_000300: 1.898455e6

QD
type: SiteQuality
SIO_000300: 1.176e1

GenotypeQuality
all individuals: 1323
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.37e-1

FS
type: SiteQuality
SIO_000300: 1.149e0

DP
type: SiteQuality
SIO_000300: 1.897372e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.15e-1

QD
type: SiteQuality
SIO_000300: 1.264e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.819284414796847e-4
allele num: 16490
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.896517e6

VQSLOD
type: SiteQuality
SIO_000300: 5.570000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

QD
type: SiteQuality
SIO_000300: 1.463e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

FS
type: SiteQuality
SIO_000300: 2.285e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2894
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.032140691328078e-4
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.729206294310911e-4
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500285054160291e-5
allele num: 66654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.92270717169775e-4
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: 6.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.896947e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.49e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.158e0

FS
type: SiteQuality
SIO_000300: 4.078e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.34e-1

QD
type: SiteQuality
SIO_000300: 2.456e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

GenotypeQuality
all individuals: 7214
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 28
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GenotypeQuality
all individuals: 1750
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.22e-1

QD
type: SiteQuality
SIO_000300: 2.127e1

MQRankSum
type: SiteQuality
SIO_000300: -5.1e-2

FS
type: SiteQuality
SIO_000300: 6.59e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.344e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.633e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.896793e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-2

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 23

GenotypeQuality
all individuals: 33
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GenotypeQuality
all individuals: 385
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variant carriers: 49

GenotypeQuality
all individuals: 133
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variant carriers: 17

GenotypeQuality
all individuals: 1001
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variant carriers: 78

GenotypeQuality
all individuals: 96
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variant carriers: 25

GenotypeQuality
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GenotypeQuality
all individuals: 24
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GenotypeQuality
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GenotypeQuality
all individuals: 21468
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variant carriers: 20652

GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 470
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variant carriers: 96

GenotypeQuality
all individuals: 5241
bin: 6.75e1
variant carriers: 57

European (Finnish)
type: Population
allele count: 1211
allele frequency: 1.834292638594365e-1
allele num: 6602
num of homozygotes: 111

East Asian
type: Population
allele count: 2873
allele frequency: 3.339920948616601e-1
allele num: 8602
num of homozygotes: 448

Other
type: Population
allele count: 184
allele frequency: 2.039911308203991e-1
allele num: 902
num of homozygotes: 18

Latino
type: Population
allele count: 909
allele frequency: 7.87012987012987e-2
allele num: 11550
num of homozygotes: 42

African
type: Population
allele count: 2088
allele frequency: 2.015055008685582e-1
allele num: 10362
num of homozygotes: 203

European (Non-Finnish)
type: Population
allele count: 11694
allele frequency: 1.761834453249767e-1
allele num: 66374
num of homozygotes: 1067

South Asian
type: Population
allele count: 4894
allele frequency: 3.029215152265412e-1
allele num: 16156
num of homozygotes: 755

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.81e0

DP
type: SiteQuality
SIO_000300: 2.224924e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.66e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.193e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-1

QD
type: SiteQuality
SIO_000300: 1.474e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.47e-1

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 22
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2779
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GenotypeQuality
all individuals: 138
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GenotypeQuality
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GenotypeQuality
all individuals: 3623
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variant carriers: 3

GenotypeQuality
all individuals: 1968
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variant carriers: 0

GenotypeQuality
all individuals: 2247
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.539676775013619e-5
allele num: 66084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

DP
type: SiteQuality
SIO_000300: 1.700021e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.043e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 3.299e1

FS
type: SiteQuality
SIO_000300: 3.413e0

VQSLOD
type: SiteQuality
SIO_000300: 6.5e-2

MQ
type: SiteQuality
SIO_000300: 5.98e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2225
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variant carriers: 0

GenotypeQuality
all individuals: 2497
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 132
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 118

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1340
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GenotypeQuality
all individuals: 234
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.504488096786782e-5
allele num: 15374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.203816131830009e-4
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 111
allele frequency: 1.075789881760031e-2
allele num: 10318
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516300227445034e-5
allele num: 65950
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

DP
type: SiteQuality
SIO_000300: 1.681793e6

VQSLOD
type: SiteQuality
SIO_000300: 2.3e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.708e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

FS
type: SiteQuality
SIO_000300: 5.659999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.57e-1

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 896
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 641
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GenotypeQuality
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 1344
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GenotypeQuality
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GenotypeQuality
all individuals: 141
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GenotypeQuality
all individuals: 33669
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GenotypeQuality
all individuals: 303
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GenotypeQuality
all individuals: 2503
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3281
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7873
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51666818333485e-5
allele num: 65934
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.679452e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.893e1

FS
type: SiteQuality
SIO_000300: 2.955e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.41e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.491e0

QD
type: SiteQuality
SIO_000300: 1.209e1

GenotypeQuality
all individuals: 163
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variant carriers: 0

GenotypeQuality
all individuals: 1335
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GenotypeQuality
all individuals: 892
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GenotypeQuality
all individuals: 3551
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variant carriers: 3

GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 145
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variant carriers: 0

GenotypeQuality
all individuals: 132
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GenotypeQuality
all individuals: 34020
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11526
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.552628384120432e-5
allele num: 65896
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.915e1

MQRankSum
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BaseQRankSum
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SIO_000300: -8.9e-1

VQSLOD
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ClippingRankSum
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DP
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InbreedingCoeff
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SIO_000300: -4.0e-4

ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.521977352976988e-5
allele num: 65704
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.497e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
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BaseQRankSum
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SIO_000300: 5.25e-1

MQRankSum
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FS
type: SiteQuality
SIO_000300: 1.971e0

DP
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-1

QD
type: SiteQuality
SIO_000300: 1.157e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.146788990825688e-3
allele num: 872
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.626047e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.94e-1

VQSLOD
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FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.843e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.837e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.53e-1

QD
type: SiteQuality
SIO_000300: 1.042e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14298
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European (Non-Finnish)
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allele count: 5
allele frequency: 7.65157775533315e-5
allele num: 65346
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.619013e6

FS
type: SiteQuality
SIO_000300: 4.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.878e0

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.83e-1

QD
type: SiteQuality
SIO_000300: 1.087e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14094
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532520076012996e-5
allele num: 65252
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.608639e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.411e0

VQSLOD
type: SiteQuality
SIO_000300: 4.33e-1

QD
type: SiteQuality
SIO_000300: 1.155e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535626535626536e-5
allele num: 65120
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
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DP
type: SiteQuality
SIO_000300: 1.599498e6

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.068e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.88e-1

MQ
type: SiteQuality
SIO_000300: 5.843e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11494
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
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Other
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East Asian
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allele frequency: 0.0e0
allele num: 8588
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13848
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.535626535626536e-5
allele num: 65120
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.81e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.88e-1

MQ
type: SiteQuality
SIO_000300: 5.843e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.328830926874709e-4
allele num: 8588
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.072951877573597e-5
allele num: 65084
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South Asian
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allele count: 2
allele frequency: 1.456452082726478e-4
allele num: 13732
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.96e-1

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

DP
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ReadPosRankSum
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