15-57839670-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57839670
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57839670
    reference: chr 15
allele count: 1
allele frequency: 8.259275166011431e-6
allele num: 121076
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.3891C>T
  hgvsp: ENST00000281282.5:c.3891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5454
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4059
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5522
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7320
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1495
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45205
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr1297Thr
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8648
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6612
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

15-57839671-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57839671
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57839671
    reference: chr 15
allele count: 48
allele frequency: 3.964845040639662e-4
allele num: 121064
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.3892G>A
  hgvsp: ENSP00000281282.5:p.Val1298Ile
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 142
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5525
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4060
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5454
  bin: 6.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 9.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1257
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 322
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 1826
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genotype quality: GenotypeQuality
  all individuals: 832
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 45214
  bin: 9.75e1
  variant carriers: 46
hgvs: p.Val1298Ile
num of homozygotes: 1
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 1.156336725254394e-4
  allele num: 8648
  num of homozygotes: 0
population: African
  type: Population
  allele count: 4
  allele frequency: 3.846893633391037e-4
  allele num: 10398
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-57839674-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57839674
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57839674
    reference: chr 15
allele count: 15
allele frequency: 1.239710403649707e-4
allele num: 120996
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.3895G>A
  hgvsp: ENSP00000281282.5:p.Ala1299Thr
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4060
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5523
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
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genotype depth: GenotypeDepth
  all individuals: 2992
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 832
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7210
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1491
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 383
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 69
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genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala1299Thr
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6612
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.50159168718842e-5
  allele num: 66596
  num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

15-57839674-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57839674
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57839674
    reference: chr 15
allele count: 1
allele frequency: 8.264736024331383e-6
allele num: 120996
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.3895G>T
  hgvsp: ENSP00000281282.5:p.Ala1299Ser
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5523
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4060
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
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genotype quality: GenotypeQuality
  all individuals: 7210
  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 45200
  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala1299Ser
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 904
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 66596
  num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ

15-57839690-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57839690
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57839690
    reference: chr 15
allele count: 1
allele frequency: 8.297791128001726e-6
allele num: 120514
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.*2T>C
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
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  allele num: 898
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population: African
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population: South Asian
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  allele num: 15924
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
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15-57839694-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57839694
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57839694
    reference: chr 15
allele count: 3
allele frequency: 2.493226734039193e-5
allele num: 120326
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.*6C>T
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
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  type: Population
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population: African
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population: European (Non-Finnish)
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population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
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http://identifiers.org/exac.variant/15-57839698-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57839698
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57839698
    reference: chr 15
allele count: 1
allele frequency: 8.324453915823122e-6
allele num: 120128
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.*10C>A
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
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site quality: ReadPosRankSum
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15-57839698-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57839698
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57839698
    reference: chr 15
allele count: 3
allele frequency: 2.497336174746936e-5
allele num: 120128
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.*10C>T
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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site quality: InbreedingCoeff
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site quality: DP
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site quality: VQSLOD
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15-57839699-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57839699
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57839699
    reference: chr 15
allele count: 12
allele frequency: 9.989511013435893e-5
allele num: 120126
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.*11G>A
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45195
  bin: 9.75e1
  variant carriers: 12
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 898
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 8.641548565502938e-5
  allele num: 11572
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6612
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

15-57839722-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57839722
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57839722
    reference: chr 15
allele count: 1
allele frequency: 8.387432271484408e-6
allele num: 119226
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.*34C>G
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5692
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45188
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3105
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 896
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10376
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6612
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

15-57839722-CCTGCAGGAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57839722
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57839713
    reference: chr 15
allele count: 3
allele frequency: 2.516229681445322e-5
allele num: 119226
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.*41_*49delGAGCTGCAG
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5692
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45188
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3105
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10376
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8638
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 3
  allele frequency: 2.592912705272256e-4
  allele num: 11570
  num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: CCTGCAGGAG
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

15-57839725-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57839725
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57839725
    reference: chr 15
allele count: 1
allele frequency: 8.416941620092923e-6
allele num: 118808
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.*37G>A
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5520
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2649
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45185
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 95
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genotype quality: GenotypeQuality
  all individuals: 1478
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genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11560
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 896
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 6.787023211619383e-5
  allele num: 14734
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

15-57839730-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57839730
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57839730
    reference: chr 15
allele count: 1
allele frequency: 8.426729586247577e-6
allele num: 118670
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.*42A>G
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45179
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 814
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genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2546
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genotype quality: GenotypeQuality
  all individuals: 874
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10372
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.515978412467406e-5
  allele num: 65964
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 894
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

15-57839735-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57839735
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57839735
    reference: chr 15
allele count: 1
allele frequency: 8.452085129401424e-6
allele num: 118314
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.*47C>G
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5520
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45179
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 435
  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2201
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genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10356
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 65866
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6612
  num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

15-57839739-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57839739
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57839739
    reference: chr 15
allele count: 1
allele frequency: 8.462098261885017e-6
allele num: 118174
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.*51C>T
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4854
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45179
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 431
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1560
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 214
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 814
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 507
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 1988
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.519295047098146e-5
  allele num: 65820
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11554
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8632
  num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/15-57884185-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57884185
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57884185
    reference: chr 15
allele count: 22
allele frequency: 4.422999597909127e-3
allele num: 4974
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.-48C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.-48C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.-48C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.-48C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.-48C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.-48C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.-48C>A
  variant of: http://identifiers.org/hgnc/43444
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 96
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
  all individuals: 1
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genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 577
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1259
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genotype quality: GenotypeQuality
  all individuals: 7
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 24
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genotype quality: GenotypeQuality
  all individuals: 439
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genotype quality: GenotypeQuality
  all individuals: 394
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genotype quality: GenotypeQuality
  all individuals: 1641
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ

15-57884197-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57884197
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57884197
    reference: chr 15
allele count: 2
allele frequency: 3.971405877680699e-4
allele num: 5036
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.-36G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.-36G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.-36G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.-36G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.-36G>A
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.-36G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.-36G>A
  variant of: http://identifiers.org/hgnc/26424
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2934
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 99
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 393
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

15-57884216-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57884216
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57884216
    reference: chr 15
allele count: 14
allele frequency: 2.667682926829268e-3
allele num: 5248
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.-17C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.-17C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.-17C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.-17C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.-17C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.-17C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.-17C>G
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.-17C>G
  variant of: http://identifiers.org/hgnc/26424
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2214
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-57884217-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57884217
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57884217
    reference: chr 15
allele count: 2
allele frequency: 3.792188092529389e-4
allele num: 5274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.-16C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.-16C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.-16C>A
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.-16C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.-16C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.-16C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.-16C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.-16C>A
  variant of: http://identifiers.org/hgnc/26424
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

15-57884219-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57884219
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57884219
    reference: chr 15
allele count: 2796
allele frequency: 4.105726872246696e-1
allele num: 6810
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.-14A>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.-14A>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.-14A>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.-14A>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.-14A>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.-14A>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.-14A>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.-14A>G
  variant of: http://identifiers.org/hgnc/43444
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 2.75e1
  variant carriers: 231
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 2.5e0
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 1.75e1
  variant carriers: 690
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 7.5e0
  variant carriers: 492
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 3.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 2.25e1
  variant carriers: 433
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 1.25e1
  variant carriers: 801
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.75e1
  variant carriers: 95
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.75e1
  variant carriers: 113
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 7.5e0
  variant carriers: 95
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.75e1
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 2.25e1
  variant carriers: 113
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.25e1
  variant carriers: 93
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 2.5e0
  variant carriers: 3
num of homozygotes: 506
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

15-57884268-G-GGGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57884268
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57884271
    reference: chr 15
allele count: 1
allele frequency: 3.496503496503497e-4
allele num: 2860
alternate allele: GGGC
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.41_43dupGCG
  hgvsp: ENSP00000369933.2:p.Gly14dup
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.41_43dupGCG
  hgvsp: ENSP00000435774.1:p.Gly14dup
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.41_43dupGCG
  hgvsp: ENSP00000369935.2:p.Gly14dup
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.41_43dupGCG
  hgvsp: ENSP00000267853.5:p.Gly14dup
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369942
  ensembl transcript: ENST00000380568
  gene symbol: GCOM1
  hgvsc: ENST00000380568.3:c.41_43dupGCG
  hgvsp: ENSP00000369942.3:p.Gly14dup
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.41_43dupGCG
  hgvsp: ENSP00000435028.1:p.Gly14dup
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.41_43dupGCG
  hgvsp: ENSP00000434588.1:p.Gly14dup
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.41_43dupGCG
  hgvsp: ENSP00000369943.2:p.Gly14dup
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434505
  ensembl transcript: ENST00000477282
  gene symbol: GCOM1
  hgvsc: ENST00000477282.1:c.41_43dupGCG
  hgvsp: ENSP00000434505.1:p.Gly14dup
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.41_43dupGCG
  hgvsp: ENSP00000459294.1:p.Gly14dup
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.41_43dupGCG
  hgvsp: ENSP00000369939.4:p.Gly14dup
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436922
  ensembl transcript: ENST00000482814
  gene symbol: GCOM1
  hgvsc: ENST00000482814.1:c.41_43dupGCG
  hgvsp: ENSP00000436922.1:p.Gly14dup
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.41_43dupGCG
  hgvsp: ENSP00000465231.1:p.Gly14dup
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.41_43dupGCG
  hgvsp: ENSP00000433702.1:p.Gly14dup
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.41_43dupGCG
  hgvsp: ENSP00000432563.1:p.Gly14dup
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.41_43dupGCG
  hgvsp: ENSP00000432066.1:p.Gly14dup
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2353_-2351dupGCG
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.41_43dupGCG
  hgvsp: ENSP00000461898.1:p.Gly14dup
  variant of: http://identifiers.org/hgnc/26424
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly14dup
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

15-57884296-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57884296
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57884296
    reference: chr 15
allele count: 2
allele frequency: 1.968503937007874e-3
allele num: 1016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436922
  ensembl transcript: ENST00000482814
  gene symbol: GCOM1
  hgvsc: ENST00000482814.1:c.64C>T
  hgvsp: ENSP00000436922.1:p.Pro22Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.64C>T
  hgvsp: ENSP00000433702.1:p.Pro22Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369942
  ensembl transcript: ENST00000380568
  gene symbol: GCOM1
  hgvsc: ENST00000380568.3:c.64C>T
  hgvsp: ENSP00000369942.3:p.Pro22Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.64C>T
  hgvsp: ENSP00000465231.1:p.Pro22Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.64C>T
  hgvsp: ENSP00000435774.1:p.Pro22Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.64C>T
  hgvsp: ENSP00000379483.1:p.Pro22Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.64C>T
  hgvsp: ENSP00000369939.4:p.Pro22Ser
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.64C>T
  hgvsp: ENSP00000432066.1:p.Pro22Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.64C>T
  hgvsp: ENSP00000369933.2:p.Pro22Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.64C>T
  hgvsp: ENSP00000435028.1:p.Pro22Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434505
  ensembl transcript: ENST00000477282
  gene symbol: GCOM1
  hgvsc: ENST00000477282.1:c.64C>T
  hgvsp: ENSP00000434505.1:p.Pro22Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.64C>T
  hgvsp: ENSP00000459294.1:p.Pro22Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.64C>T
  hgvsp: ENSP00000434588.1:p.Pro22Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.64C>T
  hgvsp: ENSP00000369935.2:p.Pro22Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.64C>T
  hgvsp: ENSP00000432563.1:p.Pro22Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436614
  ensembl transcript: ENST00000496627
  gene symbol: GCOM1
  hgvsc: ENST00000496627.1:c.64C>T
  hgvsp: ENSP00000436614.1:p.Pro22Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.64C>T
  hgvsp: ENSP00000369943.2:p.Pro22Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.64C>T
  hgvsp: ENSP00000461898.1:p.Pro22Ser
  variant of: http://identifiers.org/hgnc/26424
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro22Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS

15-57891824-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57891824
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57891824
    reference: chr 15
allele count: 3
allele frequency: 2.787585950566809e-4
allele num: 10762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.76-4643C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434505
  ensembl transcript: ENST00000477282
  gene symbol: GCOM1
  hgvsc: ENST00000477282.1:c.76-4643C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.76-4643C>T
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.76-4643C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.76-4643C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.76-4643C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.76-4643C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.76-4643C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.76-4643C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.76-4643C>T
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436922
  ensembl transcript: ENST00000482814
  gene symbol: GCOM1
  hgvsc: ENST00000482814.1:c.76-4643C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.76-4643C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.76-4643C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.-48C>T
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.76-4643C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2318-4643C>T
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.76-4643C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436614
  ensembl transcript: ENST00000496627
  gene symbol: GCOM1
  hgvsc: ENST00000496627.1:c.76-4643C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.76-4643C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369942
  ensembl transcript: ENST00000380568
  gene symbol: GCOM1
  hgvsc: ENST00000380568.3:c.76-4643C>T
  variant of: http://identifiers.org/hgnc/26424
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

15-57891858-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57891858
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57891858
    reference: chr 15
allele count: 1291
allele frequency: 1.199145457923091e-1
allele num: 10766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.76-4609A>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436922
  ensembl transcript: ENST00000482814
  gene symbol: GCOM1
  hgvsc: ENST00000482814.1:c.76-4609A>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.76-4609A>T
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.76-4609A>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.76-4609A>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436614
  ensembl transcript: ENST00000496627
  gene symbol: GCOM1
  hgvsc: ENST00000496627.1:c.76-4609A>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.76-4609A>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.76-4609A>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434505
  ensembl transcript: ENST00000477282
  gene symbol: GCOM1
  hgvsc: ENST00000477282.1:c.76-4609A>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369942
  ensembl transcript: ENST00000380568
  gene symbol: GCOM1
  hgvsc: ENST00000380568.3:c.76-4609A>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.-14A>T
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.76-4609A>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2318-4609A>T
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.76-4609A>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.76-4609A>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.76-4609A>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.76-4609A>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.76-4609A>T
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.76-4609A>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.76-4609A>T
  variant of: http://identifiers.org/hgnc/26424
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 80
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ

15-57891886-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57891886
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57891886
    reference: chr 15
allele count: 1
allele frequency: 9.291953168556031e-5
allele num: 10762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.15C>T
  hgvsp: ENST00000569089.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.76-4581C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.76-4581C>T
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369942
  ensembl transcript: ENST00000380568
  gene symbol: GCOM1
  hgvsc: ENST00000380568.3:c.76-4581C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.76-4581C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.76-4581C>T
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.76-4581C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.76-4581C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2318-4581C>T
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.76-4581C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.76-4581C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.76-4581C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.76-4581C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436922
  ensembl transcript: ENST00000482814
  gene symbol: GCOM1
  hgvsc: ENST00000482814.1:c.76-4581C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436614
  ensembl transcript: ENST00000496627
  gene symbol: GCOM1
  hgvsc: ENST00000496627.1:c.76-4581C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.76-4581C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434505
  ensembl transcript: ENST00000477282
  gene symbol: GCOM1
  hgvsc: ENST00000477282.1:c.76-4581C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.76-4581C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.76-4581C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.76-4581C>T
  variant of: http://identifiers.org/hgnc/26424
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu5Leu
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum

15-57891887-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57891887
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57891887
    reference: chr 15
allele count: 1
allele frequency: 9.291953168556031e-5
allele num: 10762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.76-4580G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.16G>A
  hgvsp: ENSP00000457126.1:p.Val6Ile
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.76-4580G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2318-4580G>A
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.76-4580G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.76-4580G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.76-4580G>A
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.76-4580G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.76-4580G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.76-4580G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.76-4580G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.76-4580G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.76-4580G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436614
  ensembl transcript: ENST00000496627
  gene symbol: GCOM1
  hgvsc: ENST00000496627.1:c.76-4580G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.76-4580G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.76-4580G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.76-4580G>A
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.76-4580G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436922
  ensembl transcript: ENST00000482814
  gene symbol: GCOM1
  hgvsc: ENST00000482814.1:c.76-4580G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434505
  ensembl transcript: ENST00000477282
  gene symbol: GCOM1
  hgvsc: ENST00000477282.1:c.76-4580G>A
  variant of: http://identifiers.org/hgnc/26424
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Val6Ile
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

15-57891899-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57891899
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57891899
    reference: chr 15
allele count: 2
allele frequency: 1.858390633711206e-4
allele num: 10762
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.76-4568G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.76-4568G>C
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.76-4568G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.28G>C
  hgvsp: ENSP00000457126.1:p.Glu10Gln
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.76-4568G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.76-4568G>C
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434505
  ensembl transcript: ENST00000477282
  gene symbol: GCOM1
  hgvsc: ENST00000477282.1:c.76-4568G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436922
  ensembl transcript: ENST00000482814
  gene symbol: GCOM1
  hgvsc: ENST00000482814.1:c.76-4568G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2318-4568G>C
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.76-4568G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.76-4568G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.76-4568G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369942
  ensembl transcript: ENST00000380568
  gene symbol: GCOM1
  hgvsc: ENST00000380568.3:c.76-4568G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.76-4568G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.76-4568G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.76-4568G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.76-4568G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.76-4568G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436614
  ensembl transcript: ENST00000496627
  gene symbol: GCOM1
  hgvsc: ENST00000496627.1:c.76-4568G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.76-4568G>C
  variant of: http://identifiers.org/hgnc/26424
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Glu10Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

15-57891906-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57891906
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57891906
    reference: chr 15
allele count: 3
allele frequency: 2.787585950566809e-4
allele num: 10762
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.76-4561G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.76-4561G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.76-4561G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.76-4561G>C
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434505
  ensembl transcript: ENST00000477282
  gene symbol: GCOM1
  hgvsc: ENST00000477282.1:c.76-4561G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.76-4561G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2318-4561G>C
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436614
  ensembl transcript: ENST00000496627
  gene symbol: GCOM1
  hgvsc: ENST00000496627.1:c.76-4561G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.76-4561G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.76-4561G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.76-4561G>C
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.76-4561G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.76-4561G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.76-4561G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.76-4561G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.30+5G>C
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436922
  ensembl transcript: ENST00000482814
  gene symbol: GCOM1
  hgvsc: ENST00000482814.1:c.76-4561G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369942
  ensembl transcript: ENST00000380568
  gene symbol: GCOM1
  hgvsc: ENST00000380568.3:c.76-4561G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.76-4561G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.76-4561G>C
  variant of: http://identifiers.org/hgnc/26424
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.30+5G>C
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

15-57891911-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57891911
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57891911
    reference: chr 15
allele count: 1
allele frequency: 9.291953168556031e-5
allele num: 10762
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.76-4556G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.76-4556G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.76-4556G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436614
  ensembl transcript: ENST00000496627
  gene symbol: GCOM1
  hgvsc: ENST00000496627.1:c.76-4556G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.76-4556G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.76-4556G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.76-4556G>C
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.76-4556G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.76-4556G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.76-4556G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.76-4556G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.76-4556G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2318-4556G>C
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.76-4556G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.76-4556G>C
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434505
  ensembl transcript: ENST00000477282
  gene symbol: GCOM1
  hgvsc: ENST00000477282.1:c.76-4556G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369942
  ensembl transcript: ENST00000380568
  gene symbol: GCOM1
  hgvsc: ENST00000380568.3:c.76-4556G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.30+10G>C
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.76-4556G>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.76-4556G>C
  variant of: http://identifiers.org/hgnc/26424
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

15-57891943-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57891943
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57891943
    reference: chr 15
allele count: 1
allele frequency: 9.291953168556031e-5
allele num: 10762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369942
  ensembl transcript: ENST00000380568
  gene symbol: GCOM1
  hgvsc: ENST00000380568.3:c.76-4524A>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.76-4524A>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.76-4524A>G
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2318-4524A>G
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.76-4524A>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.76-4524A>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.76-4524A>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.76-4524A>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.76-4524A>G
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434505
  ensembl transcript: ENST00000477282
  gene symbol: GCOM1
  hgvsc: ENST00000477282.1:c.76-4524A>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436922
  ensembl transcript: ENST00000482814
  gene symbol: GCOM1
  hgvsc: ENST00000482814.1:c.76-4524A>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.76-4524A>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.76-4524A>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.30+42A>G
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.76-4524A>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.76-4524A>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.76-4524A>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436614
  ensembl transcript: ENST00000496627
  gene symbol: GCOM1
  hgvsc: ENST00000496627.1:c.76-4524A>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.76-4524A>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.76-4524A>G
  variant of: http://identifiers.org/hgnc/26424
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

15-57896423-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57896423
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57896423
    reference: chr 15
allele count: 1
allele frequency: 8.316284949187499e-6
allele num: 120246
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.76-44C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.76-44C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.76-44C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434505
  ensembl transcript: ENST00000477282
  gene symbol: GCOM1
  hgvsc: ENST00000477282.1:c.76-44C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.76-44C>G
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.76-44C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.76-44C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.76-44C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2318-44C>G
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.76-44C>G
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.76-44C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369942
  ensembl transcript: ENST00000380568
  gene symbol: GCOM1
  hgvsc: ENST00000380568.3:c.76-44C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.76-44C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436922
  ensembl transcript: ENST00000482814
  gene symbol: GCOM1
  hgvsc: ENST00000482814.1:c.76-44C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.76-44C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.76-44C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.76-44C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.76-44C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.76-44C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.31-44C>G
  variant of: http://identifiers.org/hgnc/43444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

15-57896429-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57896429
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57896429
    reference: chr 15
allele count: 1
allele frequency: 8.313242996092776e-6
allele num: 120290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.76-38C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.76-38C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.76-38C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.76-38C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.76-38C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369942
  ensembl transcript: ENST00000380568
  gene symbol: GCOM1
  hgvsc: ENST00000380568.3:c.76-38C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.76-38C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2318-38C>T
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436922
  ensembl transcript: ENST00000482814
  gene symbol: GCOM1
  hgvsc: ENST00000482814.1:c.76-38C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.76-38C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.76-38C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.76-38C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.76-38C>T
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.76-38C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434505
  ensembl transcript: ENST00000477282
  gene symbol: GCOM1
  hgvsc: ENST00000477282.1:c.76-38C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.76-38C>T
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436614
  ensembl transcript: ENST00000496627
  gene symbol: GCOM1
  hgvsc: ENST00000496627.1:c.76-38C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.76-38C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.76-38C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.76-38C>T
  variant of: http://identifiers.org/hgnc/26424
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

15-57896434-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57896434
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57896433
    reference: chr 15
allele count: 1
allele frequency: 8.303303053954863e-6
allele num: 120434
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.76-31delC
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.31-31delC
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.76-31delC
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.76-31delC
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.76-31delC
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436922
  ensembl transcript: ENST00000482814
  gene symbol: GCOM1
  hgvsc: ENST00000482814.1:c.76-31delC
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.76-31delC
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.76-31delC
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.76-31delC
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.76-31delC
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.76-31delC
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.76-31delC
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.76-31delC
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.76-31delC
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2318-31delC
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434505
  ensembl transcript: ENST00000477282
  gene symbol: GCOM1
  hgvsc: ENST00000477282.1:c.76-31delC
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436614
  ensembl transcript: ENST00000496627
  gene symbol: GCOM1
  hgvsc: ENST00000496627.1:c.76-31delC
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369942
  ensembl transcript: ENST00000380568
  gene symbol: GCOM1
  hgvsc: ENST00000380568.3:c.76-31delC
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.76-31delC
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.76-31delC
  variant of: http://identifiers.org/hgnc/26424
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: TC
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

15-57896444-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57896444
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57896444
    reference: chr 15
allele count: 1
allele frequency: 8.28775070445881e-6
allele num: 120660
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.76-23C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369942
  ensembl transcript: ENST00000380568
  gene symbol: GCOM1
  hgvsc: ENST00000380568.3:c.76-23C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.76-23C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.76-23C>T
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.76-23C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.76-23C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2318-23C>T
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.76-23C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.31-23C>T
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.76-23C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.76-23C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436922
  ensembl transcript: ENST00000482814
  gene symbol: GCOM1
  hgvsc: ENST00000482814.1:c.76-23C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.76-23C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.76-23C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.76-23C>T
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.76-23C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.76-23C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.76-23C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436614
  ensembl transcript: ENST00000496627
  gene symbol: GCOM1
  hgvsc: ENST00000496627.1:c.76-23C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.76-23C>T
  variant of: http://identifiers.org/hgnc/26424
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

15-57896449-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57896449
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57896449
    reference: chr 15
allele count: 10
allele frequency: 8.275679433281473e-5
allele num: 120836
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.76-18C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.31-18C>G
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434505
  ensembl transcript: ENST00000477282
  gene symbol: GCOM1
  hgvsc: ENST00000477282.1:c.76-18C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.76-18C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.76-18C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.76-18C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2318-18C>G
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436614
  ensembl transcript: ENST00000496627
  gene symbol: GCOM1
  hgvsc: ENST00000496627.1:c.76-18C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.76-18C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.76-18C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.76-18C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.76-18C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.76-18C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.76-18C>G
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.76-18C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436922
  ensembl transcript: ENST00000482814
  gene symbol: GCOM1
  hgvsc: ENST00000482814.1:c.76-18C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.76-18C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.76-18C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.76-18C>G
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.76-18C>G
  variant of: http://identifiers.org/hgnc/43444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/15-57896456-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57896456
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57896456
    reference: chr 15
allele count: 1
allele frequency: 8.263643275047103e-6
allele num: 121012
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2318-11C>A
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369942
  ensembl transcript: ENST00000380568
  gene symbol: GCOM1
  hgvsc: ENST00000380568.3:c.76-11C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.76-11C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.76-11C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.76-11C>A
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.76-11C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.76-11C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.76-11C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436614
  ensembl transcript: ENST00000496627
  gene symbol: GCOM1
  hgvsc: ENST00000496627.1:c.76-11C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.76-11C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.76-11C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.76-11C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.76-11C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.76-11C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.76-11C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.76-11C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.76-11C>A
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434505
  ensembl transcript: ENST00000477282
  gene symbol: GCOM1
  hgvsc: ENST00000477282.1:c.76-11C>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.31-11C>A
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.76-11C>A
  variant of: http://identifiers.org/hgnc/26424
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

15-57896456-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57896456
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57896456
    reference: chr 15
allele count: 1
allele frequency: 8.263643275047103e-6
allele num: 121012
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.76-11C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.76-11C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.76-11C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.76-11C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369942
  ensembl transcript: ENST00000380568
  gene symbol: GCOM1
  hgvsc: ENST00000380568.3:c.76-11C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.76-11C>T
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436614
  ensembl transcript: ENST00000496627
  gene symbol: GCOM1
  hgvsc: ENST00000496627.1:c.76-11C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.76-11C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.76-11C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436922
  ensembl transcript: ENST00000482814
  gene symbol: GCOM1
  hgvsc: ENST00000482814.1:c.76-11C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.76-11C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.76-11C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.76-11C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2318-11C>T
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.76-11C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434505
  ensembl transcript: ENST00000477282
  gene symbol: GCOM1
  hgvsc: ENST00000477282.1:c.76-11C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.76-11C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.76-11C>T
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.31-11C>T
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.76-11C>T
  variant of: http://identifiers.org/hgnc/43444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-57896461-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57896461
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57896461
    reference: chr 15
allele count: 1
allele frequency: 8.257638315441784e-6
allele num: 121100
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.76-6T>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.76-6T>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.76-6T>C
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.76-6T>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.76-6T>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.76-6T>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2318-6T>C
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434505
  ensembl transcript: ENST00000477282
  gene symbol: GCOM1
  hgvsc: ENST00000477282.1:c.76-6T>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.76-6T>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.76-6T>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.76-6T>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.31-6T>C
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.76-6T>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.76-6T>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.76-6T>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.76-6T>C
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.76-6T>C
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.76-6T>C
  variant of: http://identifiers.org/hgnc/26424
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.76-6T>C
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS

15-57896466-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57896466
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57896466
    reference: chr 15
allele count: 1
allele frequency: 8.251642076773278e-6
allele num: 121188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.31-1G>A
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2318-1G>A
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.76-1G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.76-1G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.76-1G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.76-1G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.76-1G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.76-1G>A
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.76-1G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369942
  ensembl transcript: ENST00000380568
  gene symbol: GCOM1
  hgvsc: ENST00000380568.3:c.76-1G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.76-1G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.76-1G>A
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.76-1G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.76-1G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.76-1G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434505
  ensembl transcript: ENST00000477282
  gene symbol: GCOM1
  hgvsc: ENST00000477282.1:c.76-1G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.76-1G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.76-1G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436922
  ensembl transcript: ENST00000482814
  gene symbol: GCOM1
  hgvsc: ENST00000482814.1:c.76-1G>A
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.76-1G>A
  variant of: http://identifiers.org/hgnc/26424
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.76-1G>A
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS

15-57896467-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57896467
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57896467
    reference: chr 15
allele count: 1
allele frequency: 8.252050634582693e-6
allele num: 121182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.76G>A
  hgvsp: ENSP00000369935.2:p.Ala26Thr
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.31G>A
  hgvsp: ENSP00000457126.1:p.Ala11Thr
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.76G>A
  hgvsp: ENSP00000369933.2:p.Ala26Thr
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.76G>A
  hgvsp: ENSP00000434588.1:p.Ala26Thr
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.76G>A
  hgvsp: ENSP00000267853.5:p.Ala26Thr
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436614
  ensembl transcript: ENST00000496627
  gene symbol: GCOM1
  hgvsc: ENST00000496627.1:c.76G>A
  hgvsp: ENSP00000436614.1:p.Ala26Thr
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.76G>A
  hgvsp: ENSP00000435028.1:p.Ala26Thr
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434505
  ensembl transcript: ENST00000477282
  gene symbol: GCOM1
  hgvsc: ENST00000477282.1:c.76G>A
  hgvsp: ENSP00000434505.1:p.Ala26Thr
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.76G>A
  hgvsp: ENSP00000432563.1:p.Ala26Thr
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.76G>A
  hgvsp: ENSP00000369943.2:p.Ala26Thr
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369942
  ensembl transcript: ENST00000380568
  gene symbol: GCOM1
  hgvsc: ENST00000380568.3:c.76G>A
  hgvsp: ENSP00000369942.3:p.Ala26Thr
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2318G>A
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.76G>A
  hgvsp: ENSP00000459294.1:p.Ala26Thr
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.76G>A
  hgvsp: ENSP00000433702.1:p.Ala26Thr
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.76G>A
  hgvsp: ENSP00000465231.1:p.Ala26Thr
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.76G>A
  hgvsp: ENSP00000379483.1:p.Ala26Thr
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.76G>A
  hgvsp: ENSP00000369939.4:p.Ala26Thr
  variant of: http://identifiers.org/hgnc/43444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala26Thr
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

15-57896474-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57896474
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57896474
    reference: chr 15
allele count: 5
allele frequency: 4.122895261968765e-5
allele num: 121274
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.83T>C
  hgvsp: ENSP00000369939.4:p.Val28Ala
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.83T>C
  hgvsp: ENSP00000435028.1:p.Val28Ala
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436614
  ensembl transcript: ENST00000496627
  gene symbol: GCOM1
  hgvsc: ENST00000496627.1:c.83T>C
  hgvsp: ENSP00000436614.1:p.Val28Ala
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.83T>C
  hgvsp: ENSP00000459294.1:p.Val28Ala
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.83T>C
  hgvsp: ENSP00000433702.1:p.Val28Ala
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.83T>C
  hgvsp: ENSP00000435774.1:p.Val28Ala
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.38T>C
  hgvsp: ENSP00000457126.1:p.Val13Ala
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2311T>C
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.83T>C
  hgvsp: ENSP00000369933.2:p.Val28Ala
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.83T>C
  hgvsp: ENSP00000369943.2:p.Val28Ala
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.83T>C
  hgvsp: ENSP00000379483.1:p.Val28Ala
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.83T>C
  hgvsp: ENSP00000432066.1:p.Val28Ala
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.83T>C
  hgvsp: ENSP00000369935.2:p.Val28Ala
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.83T>C
  hgvsp: ENSP00000461898.1:p.Val28Ala
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.83T>C
  hgvsp: ENSP00000432563.1:p.Val28Ala
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.83T>C
  hgvsp: ENSP00000465231.1:p.Val28Ala
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.83T>C
  hgvsp: ENSP00000267853.5:p.Val28Ala
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436922
  ensembl transcript: ENST00000482814
  gene symbol: GCOM1
  hgvsc: ENST00000482814.1:c.83T>C
  hgvsp: ENSP00000436922.1:p.Val28Ala
  variant of: http://identifiers.org/hgnc/26424
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Val28Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/15-57896482-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57896482
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57896482
    reference: chr 15
allele count: 56
allele frequency: 4.616576808296648e-4
allele num: 121302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.91C>A
  hgvsp: ENSP00000369939.4:p.Leu31Ile
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.91C>A
  hgvsp: ENSP00000433702.1:p.Leu31Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369942
  ensembl transcript: ENST00000380568
  gene symbol: GCOM1
  hgvsc: ENST00000380568.3:c.91C>A
  hgvsp: ENSP00000369942.3:p.Leu31Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.91C>A
  hgvsp: ENSP00000267853.5:p.Leu31Ile
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2303C>A
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.91C>A
  hgvsp: ENSP00000432066.1:p.Leu31Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.46C>A
  hgvsp: ENSP00000457126.1:p.Leu16Ile
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.91C>A
  hgvsp: ENSP00000369933.2:p.Leu31Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436922
  ensembl transcript: ENST00000482814
  gene symbol: GCOM1
  hgvsc: ENST00000482814.1:c.91C>A
  hgvsp: ENSP00000436922.1:p.Leu31Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.91C>A
  hgvsp: ENSP00000369943.2:p.Leu31Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.91C>A
  hgvsp: ENSP00000435774.1:p.Leu31Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.91C>A
  hgvsp: ENSP00000369935.2:p.Leu31Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.91C>A
  hgvsp: ENSP00000432563.1:p.Leu31Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.91C>A
  hgvsp: ENSP00000435028.1:p.Leu31Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.91C>A
  hgvsp: ENSP00000461898.1:p.Leu31Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.91C>A
  hgvsp: ENSP00000434588.1:p.Leu31Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.91C>A
  hgvsp: ENSP00000379483.1:p.Leu31Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436614
  ensembl transcript: ENST00000496627
  gene symbol: GCOM1
  hgvsc: ENST00000496627.1:c.91C>A
  hgvsp: ENSP00000436614.1:p.Leu31Ile
  variant of: http://identifiers.org/hgnc/26424
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu31Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

15-57896482-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57896482
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57896482
    reference: chr 15
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.91C>T
  hgvsp: ENST00000380565.4:c.91C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.91C>T
  hgvsp: ENST00000267853.5:c.91C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.91C>T
  hgvsp: ENST00000380560.2:c.91C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2303C>T
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.91C>T
  hgvsp: ENST00000463717.1:c.91C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.91C>T
  hgvsp: ENST00000471563.1:c.91C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.91C>T
  hgvsp: ENST00000488175.1:c.91C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.91C>T
  hgvsp: ENST00000468886.1:c.91C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436614
  ensembl transcript: ENST00000496627
  gene symbol: GCOM1
  hgvsc: ENST00000496627.1:c.91C>T
  hgvsp: ENST00000496627.1:c.91C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.91C>T
  hgvsp: ENST00000496101.1:c.91C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.46C>T
  hgvsp: ENST00000569089.1:c.46C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.91C>T
  hgvsp: ENST00000380561.2:c.91C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.91C>T
  hgvsp: ENST00000587652.1:c.91C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.91C>T
  hgvsp: ENST00000572390.1:c.91C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.91C>T
  hgvsp: ENST00000460962.1:c.91C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.91C>T
  hgvsp: ENST00000574161.1:c.91C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.91C>T
  hgvsp: ENST00000380569.2:c.91C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.91C>T
  hgvsp: ENST00000396180.1:c.91C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu31Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

15-57896485-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57896485
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57896485
    reference: chr 15
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.94C>T
  hgvsp: ENSP00000434588.1:p.Arg32Trp
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369942
  ensembl transcript: ENST00000380568
  gene symbol: GCOM1
  hgvsc: ENST00000380568.3:c.94C>T
  hgvsp: ENSP00000369942.3:p.Arg32Trp
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.94C>T
  hgvsp: ENSP00000433702.1:p.Arg32Trp
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.94C>T
  hgvsp: ENSP00000267853.5:p.Arg32Trp
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.94C>T
  hgvsp: ENSP00000435774.1:p.Arg32Trp
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.94C>T
  hgvsp: ENSP00000432563.1:p.Arg32Trp
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.94C>T
  hgvsp: ENSP00000459294.1:p.Arg32Trp
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.94C>T
  hgvsp: ENSP00000461898.1:p.Arg32Trp
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.94C>T
  hgvsp: ENSP00000465231.1:p.Arg32Trp
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434505
  ensembl transcript: ENST00000477282
  gene symbol: GCOM1
  hgvsc: ENST00000477282.1:c.94C>T
  hgvsp: ENSP00000434505.1:p.Arg32Trp
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436922
  ensembl transcript: ENST00000482814
  gene symbol: GCOM1
  hgvsc: ENST00000482814.1:c.94C>T
  hgvsp: ENSP00000436922.1:p.Arg32Trp
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.94C>T
  hgvsp: ENSP00000432066.1:p.Arg32Trp
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.94C>T
  hgvsp: ENSP00000369939.4:p.Arg32Trp
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.49C>T
  hgvsp: ENSP00000457126.1:p.Arg17Trp
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.94C>T
  hgvsp: ENSP00000379483.1:p.Arg32Trp
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2300C>T
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436614
  ensembl transcript: ENST00000496627
  gene symbol: GCOM1
  hgvsc: ENST00000496627.1:c.94C>T
  hgvsp: ENSP00000436614.1:p.Arg32Trp
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.94C>T
  hgvsp: ENSP00000369943.2:p.Arg32Trp
  variant of: http://identifiers.org/hgnc/26424
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg32Trp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum

15-57896492-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57896492
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57896492
    reference: chr 15
allele count: 3
allele frequency: 2.472065658063878e-5
allele num: 121356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.101C>T
  hgvsp: ENSP00000461898.1:p.Thr34Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.101C>T
  hgvsp: ENSP00000432066.1:p.Thr34Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.56C>T
  hgvsp: ENSP00000457126.1:p.Thr19Ile
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.101C>T
  hgvsp: ENSP00000369933.2:p.Thr34Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.101C>T
  hgvsp: ENSP00000459294.1:p.Thr34Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.101C>T
  hgvsp: ENSP00000267853.5:p.Thr34Ile
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369942
  ensembl transcript: ENST00000380568
  gene symbol: GCOM1
  hgvsc: ENST00000380568.3:c.101C>T
  hgvsp: ENSP00000369942.3:p.Thr34Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.101C>T
  hgvsp: ENSP00000435774.1:p.Thr34Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.101C>T
  hgvsp: ENSP00000379483.1:p.Thr34Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.101C>T
  hgvsp: ENSP00000369939.4:p.Thr34Ile
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.101C>T
  hgvsp: ENSP00000433702.1:p.Thr34Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.101C>T
  hgvsp: ENSP00000435028.1:p.Thr34Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434505
  ensembl transcript: ENST00000477282
  gene symbol: GCOM1
  hgvsc: ENST00000477282.1:c.101C>T
  hgvsp: ENSP00000434505.1:p.Thr34Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2293C>T
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.101C>T
  hgvsp: ENSP00000434588.1:p.Thr34Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.101C>T
  hgvsp: ENSP00000432563.1:p.Thr34Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.101C>T
  hgvsp: ENSP00000465231.1:p.Thr34Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.101C>T
  hgvsp: ENSP00000369943.2:p.Thr34Ile
  variant of: http://identifiers.org/hgnc/26424
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Thr34Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

15-57896493-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57896493
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57896493
    reference: chr 15
allele count: 17
allele frequency: 1.400767950429294e-4
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.102C>T
  hgvsp: ENST00000380560.2:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.102C>T
  hgvsp: ENST00000267853.5:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434505
  ensembl transcript: ENST00000477282
  gene symbol: GCOM1
  hgvsc: ENST00000477282.1:c.102C>T
  hgvsp: ENST00000477282.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.102C>T
  hgvsp: ENST00000380561.2:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.57C>T
  hgvsp: ENST00000569089.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.102C>T
  hgvsp: ENST00000471563.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369942
  ensembl transcript: ENST00000380568
  gene symbol: GCOM1
  hgvsc: ENST00000380568.3:c.102C>T
  hgvsp: ENST00000380568.3:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.102C>T
  hgvsp: ENST00000488175.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.102C>T
  hgvsp: ENST00000380565.4:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436922
  ensembl transcript: ENST00000482814
  gene symbol: GCOM1
  hgvsc: ENST00000482814.1:c.102C>T
  hgvsp: ENST00000482814.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.102C>T
  hgvsp: ENST00000380569.2:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.102C>T
  hgvsp: ENST00000460962.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.102C>T
  hgvsp: ENST00000572390.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.102C>T
  hgvsp: ENST00000463717.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.102C>T
  hgvsp: ENST00000468886.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2292C>T
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.102C>T
  hgvsp: ENST00000396180.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.102C>T
  hgvsp: ENST00000587652.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26424
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Thr34Thr
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

15-57896494-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57896494
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57896494
    reference: chr 15
allele count: 4
allele frequency: 3.295815961636702e-5
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.103G>A
  hgvsp: ENSP00000267853.5:p.Val35Ile
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.103G>A
  hgvsp: ENSP00000435774.1:p.Val35Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.58G>A
  hgvsp: ENSP00000457126.1:p.Val20Ile
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436614
  ensembl transcript: ENST00000496627
  gene symbol: GCOM1
  hgvsc: ENST00000496627.1:c.103G>A
  hgvsp: ENSP00000436614.1:p.Val35Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.103G>A
  hgvsp: ENSP00000432066.1:p.Val35Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.103G>A
  hgvsp: ENSP00000461898.1:p.Val35Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2291G>A
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.103G>A
  hgvsp: ENSP00000369933.2:p.Val35Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.103G>A
  hgvsp: ENSP00000459294.1:p.Val35Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436922
  ensembl transcript: ENST00000482814
  gene symbol: GCOM1
  hgvsc: ENST00000482814.1:c.103G>A
  hgvsp: ENSP00000436922.1:p.Val35Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.103G>A
  hgvsp: ENSP00000369939.4:p.Val35Ile
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.103G>A
  hgvsp: ENSP00000432563.1:p.Val35Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.103G>A
  hgvsp: ENSP00000434588.1:p.Val35Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.103G>A
  hgvsp: ENSP00000379483.1:p.Val35Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369942
  ensembl transcript: ENST00000380568
  gene symbol: GCOM1
  hgvsc: ENST00000380568.3:c.103G>A
  hgvsp: ENSP00000369942.3:p.Val35Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.103G>A
  hgvsp: ENSP00000435028.1:p.Val35Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.103G>A
  hgvsp: ENSP00000369943.2:p.Val35Ile
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.103G>A
  hgvsp: ENSP00000433702.1:p.Val35Ile
  variant of: http://identifiers.org/hgnc/26424
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Val35Ile
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

15-57896497-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57896497
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57896497
    reference: chr 15
allele count: 3
allele frequency: 2.471699045924168e-5
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000379483
  ensembl transcript: ENST00000396180
  gene symbol: GCOM1
  hgvsc: ENST00000396180.1:c.106C>T
  hgvsp: ENSP00000379483.1:p.Pro36Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.106C>T
  hgvsp: ENSP00000435774.1:p.Pro36Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.106C>T
  hgvsp: ENSP00000369939.4:p.Pro36Ser
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.106C>T
  hgvsp: ENSP00000369933.2:p.Pro36Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.106C>T
  hgvsp: ENSP00000465231.1:p.Pro36Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.106C>T
  hgvsp: ENSP00000432563.1:p.Pro36Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.106C>T
  hgvsp: ENSP00000432066.1:p.Pro36Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.106C>T
  hgvsp: ENSP00000434588.1:p.Pro36Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.106C>T
  hgvsp: ENSP00000267853.5:p.Pro36Ser
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369943
  ensembl transcript: ENST00000380569
  gene symbol: GCOM1
  hgvsc: ENST00000380569.2:c.106C>T
  hgvsp: ENSP00000369943.2:p.Pro36Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.106C>T
  hgvsp: ENSP00000433702.1:p.Pro36Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.106C>T
  hgvsp: ENSP00000459294.1:p.Pro36Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369942
  ensembl transcript: ENST00000380568
  gene symbol: GCOM1
  hgvsc: ENST00000380568.3:c.106C>T
  hgvsp: ENSP00000369942.3:p.Pro36Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.106C>T
  hgvsp: ENSP00000369935.2:p.Pro36Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.61C>T
  hgvsp: ENSP00000457126.1:p.Pro21Ser
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.106C>T
  hgvsp: ENSP00000435028.1:p.Pro36Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436922
  ensembl transcript: ENST00000482814
  gene symbol: GCOM1
  hgvsc: ENST00000482814.1:c.106C>T
  hgvsp: ENSP00000436922.1:p.Pro36Ser
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434505
  ensembl transcript: ENST00000477282
  gene symbol: GCOM1
  hgvsc: ENST00000477282.1:c.106C>T
  hgvsp: ENSP00000434505.1:p.Pro36Ser
  variant of: http://identifiers.org/hgnc/26424
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro36Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD

15-57896498-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57896498
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57896498
    reference: chr 15
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000369939
  ensembl transcript: ENST00000380565
  gene symbol: MYZAP
  hgvsc: ENST00000380565.4:c.107C>T
  hgvsp: ENSP00000369939.4:p.Pro36Leu
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434505
  ensembl transcript: ENST00000477282
  gene symbol: GCOM1
  hgvsc: ENST00000477282.1:c.107C>T
  hgvsp: ENSP00000434505.1:p.Pro36Leu
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369935
  ensembl transcript: ENST00000380561
  gene symbol: GCOM1
  hgvsc: ENST00000380561.2:c.107C>T
  hgvsp: ENSP00000369935.2:p.Pro36Leu
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000434588
  ensembl transcript: ENST00000496101
  gene symbol: GCOM1
  hgvsc: ENST00000496101.1:c.107C>T
  hgvsp: ENSP00000434588.1:p.Pro36Leu
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000459294
  ensembl transcript: ENST00000572390
  gene symbol: GCOM1
  hgvsc: ENST00000572390.1:c.107C>T
  hgvsp: ENSP00000459294.1:p.Pro36Leu
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436922
  ensembl transcript: ENST00000482814
  gene symbol: GCOM1
  hgvsc: ENST00000482814.1:c.107C>T
  hgvsp: ENSP00000436922.1:p.Pro36Leu
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000433702
  ensembl transcript: ENST00000468886
  gene symbol: GCOM1
  hgvsc: ENST00000468886.1:c.107C>T
  hgvsp: ENSP00000433702.1:p.Pro36Leu
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435028
  ensembl transcript: ENST00000463717
  gene symbol: GCOM1
  hgvsc: ENST00000463717.1:c.107C>T
  hgvsp: ENSP00000435028.1:p.Pro36Leu
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000436614
  ensembl transcript: ENST00000496627
  gene symbol: GCOM1
  hgvsc: ENST00000496627.1:c.107C>T
  hgvsp: ENSP00000436614.1:p.Pro36Leu
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432563
  ensembl transcript: ENST00000471563
  gene symbol: GCOM1
  hgvsc: ENST00000471563.1:c.107C>T
  hgvsp: ENSP00000432563.1:p.Pro36Leu
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000432066
  ensembl transcript: ENST00000488175
  gene symbol: GCOM1
  hgvsc: ENST00000488175.1:c.107C>T
  hgvsp: ENSP00000432066.1:p.Pro36Leu
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000457126
  ensembl transcript: ENST00000569089
  gene symbol: MYZAP
  hgvsc: ENST00000569089.1:c.62C>T
  hgvsp: ENSP00000457126.1:p.Pro21Leu
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000369933
  ensembl transcript: ENST00000380560
  gene symbol: GCOM1
  hgvsc: ENST00000380560.2:c.107C>T
  hgvsp: ENSP00000369933.2:p.Pro36Leu
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000263155
  ensembl protein: ENSP00000267853
  ensembl transcript: ENST00000267853
  gene symbol: MYZAP
  hgvsc: ENST00000267853.5:c.107C>T
  hgvsp: ENSP00000267853.5:p.Pro36Leu
  variant of: http://identifiers.org/hgnc/43444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000461898
  ensembl transcript: ENST00000574161
  gene symbol: GCOM1
  hgvsc: ENST00000574161.1:c.107C>T
  hgvsp: ENSP00000461898.1:p.Pro36Leu
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000255529
  ensembl protein: ENSP00000369937
  ensembl transcript: ENST00000380563
  gene symbol: POLR2M
  hgvsc: ENST00000380563.2:c.-2287C>T
  variant of: http://identifiers.org/hgnc/14862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000465231
  ensembl transcript: ENST00000587652
  gene symbol: GCOM1
  hgvsc: ENST00000587652.1:c.107C>T
  hgvsp: ENSP00000465231.1:p.Pro36Leu
  variant of: http://identifiers.org/hgnc/26424
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137878
  ensembl protein: ENSP00000435774
  ensembl transcript: ENST00000460962
  gene symbol: GCOM1
  hgvsc: ENST00000460962.1:c.107C>T
  hgvsp: ENSP00000435774.1:p.Pro36Leu
  variant of: http://identifiers.org/hgnc/26424
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro36Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD

16-633592-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 633592
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 633592
    reference: chr 16
allele count: 5
allele frequency: 4.203517503446885e-5
allele num: 118948
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.2241C>T
  hgvsp: ENST00000026218.5:c.2241C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000480424
  gene symbol: PIGQ
  hgvsc: ENST00000480424.2:n.1686C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000476438
  gene symbol: PIGQ
  hgvsc: ENST00000476438.1:n.1259C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.*557C>T
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27011
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8554
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2536
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38330
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3383
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His747His
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD

16-633593-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 633593
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 633593
    reference: chr 16
allele count: 1
allele frequency: 8.408590215764425e-6
allele num: 118926
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000480424
  gene symbol: PIGQ
  hgvsc: ENST00000480424.2:n.1687G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.*558G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.2242G>A
  hgvsp: ENSP00000026218.5:p.Gly748Arg
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000476438
  gene symbol: PIGQ
  hgvsc: ENST00000476438.1:n.1260G>A
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27018
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38387
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1601
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3380
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8554
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2534
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2478
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly748Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

16-633595-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 633595
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 633595
    reference: chr 16
allele count: 1
allele frequency: 8.4071763657458e-6
allele num: 118946
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000480424
  gene symbol: PIGQ
  hgvsc: ENST00000480424.2:n.1689G>C
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.*560G>C
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.2244G>C
  hgvsp: ENST00000026218.5:c.2244G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000476438
  gene symbol: PIGQ
  hgvsc: ENST00000476438.1:n.1262G>C
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2480
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38466
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1602
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2530
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3380
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly748Gly
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ

16-633596-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 633596
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 633596
    reference: chr 16
allele count: 1
allele frequency: 8.4071763657458e-6
allele num: 118946
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.*561G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.2245G>A
  hgvsp: ENSP00000026218.5:p.Val749Ile
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000480424
  gene symbol: PIGQ
  hgvsc: ENST00000480424.2:n.1690G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000476438
  gene symbol: PIGQ
  hgvsc: ENST00000476438.1:n.1263G>A
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3380
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1602
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38466
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1308
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2478
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2531
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val749Ile
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum

16-633602-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 633602
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 633602
    reference: chr 16
allele count: 1
allele frequency: 8.415100055539661e-6
allele num: 118834
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000476438
  gene symbol: PIGQ
  hgvsc: ENST00000476438.1:n.1269T>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.*567T>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000480424
  gene symbol: PIGQ
  hgvsc: ENST00000480424.2:n.1696T>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.2251T>G
  hgvsp: ENSP00000026218.5:p.Leu751Val
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27062
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2535
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 8559
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3379
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2483
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu751Val
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

16-633603-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 633603
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 633603
    reference: chr 16
allele count: 1
allele frequency: 8.413825598223e-6
allele num: 118852
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000480424
  gene symbol: PIGQ
  hgvsc: ENST00000480424.2:n.1697T>C
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000476438
  gene symbol: PIGQ
  hgvsc: ENST00000476438.1:n.1270T>C
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.2252T>C
  hgvsp: ENSP00000026218.5:p.Leu751Ser
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.*568T>C
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14715
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27070
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2537
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2480
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8562
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3378
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38439
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu751Ser
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

16-633605-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 633605
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 633605
    reference: chr 16
allele count: 2
allele frequency: 1.684125433662299e-5
allele num: 118756
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.2254C>T
  hgvsp: ENSP00000026218.5:p.Arg752Trp
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000480424
  gene symbol: PIGQ
  hgvsc: ENST00000480424.2:n.1699C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.*570C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000476438
  gene symbol: PIGQ
  hgvsc: ENST00000476438.1:n.1272C>T
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2532
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3377
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38330
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg752Trp
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

16-633606-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 633606
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 633606
    reference: chr 16
allele count: 2
allele frequency: 1.6839836316791e-5
allele num: 118766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000480424
  gene symbol: PIGQ
  hgvsc: ENST00000480424.2:n.1700G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.2255G>A
  hgvsp: ENSP00000026218.5:p.Arg752Gln
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.*571G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000476438
  gene symbol: PIGQ
  hgvsc: ENST00000476438.1:n.1273G>A
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8551
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2477
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38406
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3376
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1602
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg752Gln
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

16-633607-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 633607
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 633607
    reference: chr 16
allele count: 1
allele frequency: 8.423748231012871e-6
allele num: 118712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000476438
  gene symbol: PIGQ
  hgvsc: ENST00000476438.1:n.1274G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.2256G>A
  hgvsp: ENST00000026218.5:c.2256G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.*572G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000480424
  gene symbol: PIGQ
  hgvsc: ENST00000480424.2:n.1701G>A
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8550
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2531
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 38345
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg752Arg
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD

16-633622-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 633622
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 633622
    reference: chr 16
allele count: 1
allele frequency: 8.456945689494782e-6
allele num: 118246
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000480424
  gene symbol: PIGQ
  hgvsc: ENST00000480424.2:n.1716G>C
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.*587G>C
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.2271G>C
  hgvsp: ENSP00000026218.5:p.Glu757Asp
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000476438
  gene symbol: PIGQ
  hgvsc: ENST00000476438.1:n.1289G>C
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14693
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2522
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1600
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37993
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3371
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8490
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu757Asp
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

16-633625-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 633625
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 633625
    reference: chr 16
allele count: 3
allele frequency: 2.538844318066416e-5
allele num: 118164
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.2274C>T
  hgvsp: ENST00000026218.5:c.2274C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000476438
  gene symbol: PIGQ
  hgvsc: ENST00000476438.1:n.1292C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.*590C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000480424
  gene symbol: PIGQ
  hgvsc: ENST00000480424.2:n.1719C>T
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1711
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8482
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2460
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3371
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Val758Val
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

16-633626-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 633626
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 633626
    reference: chr 16
allele count: 8
allele frequency: 6.773805693383686e-5
allele num: 118102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.*591G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.2275G>A
  hgvsp: ENSP00000026218.5:p.Ala759Thr
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000476438
  gene symbol: PIGQ
  hgvsc: ENST00000476438.1:n.1293G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000480424
  gene symbol: PIGQ
  hgvsc: ENST00000480424.2:n.1720G>A
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8204
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3373
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37843
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala759Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

16-633629-TTGTGAAGAAACCATCAGCAGGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 633629
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 633607
    reference: chr 16
allele count: 1
allele frequency: 8.471130387638926e-6
allele num: 118048
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000480424
  gene symbol: PIGQ
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000476438
  gene symbol: PIGQ
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: coding sequence
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14663
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37874
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3367
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2456
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8479
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: TTGTGAAGAAACCATCAGCAGGC
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

16-633633-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 633633
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 633633
    reference: chr 16
allele count: 2
allele frequency: 1.69606512890095e-5
allele num: 117920
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000480424
  gene symbol: PIGQ
  hgvsc: ENST00000480424.2:n.1727G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: stop_retained_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.2282G>A
  hgvsp: ENST00000026218.5:c.2282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000476438
  gene symbol: PIGQ
  hgvsc: ENST00000476438.1:n.1300G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.*598G>A
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: stop retained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26811
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37725
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8472
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2449
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2510
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ter761Ter
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

16-633634-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 633634
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 633634
    reference: chr 16
allele count: 6
allele frequency: 5.08992195453003e-5
allele num: 117880
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.*599A>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000480424
  gene symbol: PIGQ
  hgvsc: ENST00000480424.2:n.1728A>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000476438
  gene symbol: PIGQ
  hgvsc: ENST00000476438.1:n.1301A>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: stop_lost
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.2283A>G
  hgvsp: ENSP00000026218.5:p.Ter761TrpextTer27
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14656
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26780
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8470
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37642
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2511
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3368
  bin: 9.75e1
  variant carriers: 6
hgvs: p.Ter761TrpextTer27
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

16-633635-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 633635
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 633635
    reference: chr 16
allele count: 1
allele frequency: 8.494588946840863e-6
allele num: 117722
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000476438
  gene symbol: PIGQ
  hgvsc: ENST00000476438.1:n.1302A>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.*1A>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000480424
  gene symbol: PIGQ
  hgvsc: ENST00000480424.2:n.1729A>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.*600A>G
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3362
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2510
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1992
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37415
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

16-633642-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 633642
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 633642
    reference: chr 16
allele count: 2
allele frequency: 1.702272533832667e-5
allele num: 117490
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000476438
  gene symbol: PIGQ
  hgvsc: ENST00000476438.1:n.1309A>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.*8A>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.*607A>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000480424
  gene symbol: PIGQ
  hgvsc: ENST00000480424.2:n.1736A>G
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2143
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2504
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3361
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37271
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8410
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

16-633643-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 633643
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 633643
    reference: chr 16
allele count: 1
allele frequency: 8.51643672287515e-6
allele num: 117420
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.*9T>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.*608T>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000476438
  gene symbol: PIGQ
  hgvsc: ENST00000476438.1:n.1310T>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000480424
  gene symbol: PIGQ
  hgvsc: ENST00000480424.2:n.1737T>G
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3358
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37178
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2437
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ

16-633649-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 633649
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 633649
    reference: chr 16
allele count: 1
allele frequency: 8.54642417612471e-6
allele num: 117008
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.*15G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.*614G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000476438
  gene symbol: PIGQ
  hgvsc: ENST00000476438.1:n.1316G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000007541
  ensembl transcript: ENST00000480424
  gene symbol: PIGQ
  hgvsc: ENST00000480424.2:n.1743G>A
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2324
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1581
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2498
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8368
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3357
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36850
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16314
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

FS
type: SiteQuality
SIO_000300: 6.870000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.12e-2

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 3.416528e6

VQSLOD
type: SiteQuality
SIO_000300: 3.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.51e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 34
allele frequency: 5.103725719775436e-4
allele num: 66618
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.518763796909492e-4
allele num: 16308
num of homozygotes: 1

FS
type: SiteQuality
SIO_000300: 6.18e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.226e0

QD
type: SiteQuality
SIO_000300: 1.344e1

DP
type: SiteQuality
SIO_000300: 3.41647e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.58e-1

African
type: Population
allele count: 3
allele frequency: 2.884615384615385e-4
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.252833680314596e-4
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.844791538556143e-4
allele num: 16262
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.061e0

DP
type: SiteQuality
SIO_000300: 3.410389e6

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

FS
type: SiteQuality
SIO_000300: 1.363e0

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-1

QD
type: SiteQuality
SIO_000300: 1.35e1

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.061e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.44e-1

QD
type: SiteQuality
SIO_000300: 1.35e1

DP
type: SiteQuality
SIO_000300: 3.410389e6

FS
type: SiteQuality
SIO_000300: 1.363e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.469e1

MQ
type: SiteQuality
SIO_000300: 5.974e1

MQRankSum
type: SiteQuality
SIO_000300: -2.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.234e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.330000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-2

FS
type: SiteQuality
SIO_000300: 2.776e0

DP
type: SiteQuality
SIO_000300: 3.395951e6

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

FS
type: SiteQuality
SIO_000300: 7.268e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
SIO_000300: 5.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.087e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.23e-1

QD
type: SiteQuality
SIO_000300: 1.413e1

DP
type: SiteQuality
SIO_000300: 3.390409e6

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15670
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507113576079093e-5
allele num: 66352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.45e-1

DP
type: SiteQuality
SIO_000300: 3.384336e6

QD
type: SiteQuality
SIO_000300: 1.292e1

VQSLOD
type: SiteQuality
SIO_000300: 5.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQ
type: SiteQuality
SIO_000300: 5.969e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15670
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQ
type: SiteQuality
SIO_000300: 5.969e1

DP
type: SiteQuality
SIO_000300: 3.384336e6

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.292e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.03e0

African
type: Population
allele count: 7
allele frequency: 6.742438836447698e-4
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.027909219687151e-5
allele num: 66358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-2

QD
type: SiteQuality
SIO_000300: 1.49e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.135e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 3.3826e6

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66106
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15028
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.025e0

MQ
type: SiteQuality
SIO_000300: 5.896e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.349959e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e-1

QD
type: SiteQuality
SIO_000300: 1.23e1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66106
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.025e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e-1

QD
type: SiteQuality
SIO_000300: 1.23e1

MQ
type: SiteQuality
SIO_000300: 5.896e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.349959e6

MQRankSum
type: SiteQuality
SIO_000300: -1.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.32e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66010
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.154e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.89e-1

DP
type: SiteQuality
SIO_000300: 3.343411e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.219e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.91e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 3.340243e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.641e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.291e0

VQSLOD
type: SiteQuality
SIO_000300: 9.6e-2

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.9e-1

QD
type: SiteQuality
SIO_000300: 1.647e1

VQSLOD
type: SiteQuality
SIO_000300: 1.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.580000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.59e-1

DP
type: SiteQuality
SIO_000300: 3.337784e6

MQRankSum
type: SiteQuality
SIO_000300: -3.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.199e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.85e0

VQSLOD
type: SiteQuality
SIO_000300: -6.694e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

QD
type: SiteQuality
SIO_000300: 1.172e1

DP
type: SiteQuality
SIO_000300: 3.336211e6

GenotypeQuality
all individuals: 326
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 191
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 517
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 187
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

South Asian
type: Population
allele count: 22
allele frequency: 6.307339449541285e-3
allele num: 3488
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1194
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.66e-2

FS
type: SiteQuality
SIO_000300: 1.371e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

QD
type: SiteQuality
SIO_000300: 1.592e1

DP
type: SiteQuality
SIO_000300: 5.9064e4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 178
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 129
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.754385964912281e-2
allele num: 114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1220
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.281e1

VQSLOD
type: SiteQuality
SIO_000300: -7.687e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.93e-1

FS
type: SiteQuality
SIO_000300: 8.086e0

DP
type: SiteQuality
SIO_000300: 6.3076e4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.66e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

GenotypeQuality
all individuals: 241
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 10
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2121
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.898894154818325e-4
allele num: 1266
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 1.101694915254237e-1
allele num: 118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3678
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.74e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.09e-1

QD
type: SiteQuality
SIO_000300: 1.268e1

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.6e0

FS
type: SiteQuality
SIO_000300: 5.25e-1

DP
type: SiteQuality
SIO_000300: 6.9711e4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

GenotypeQuality
all individuals: 293
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1134
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2138
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 5.399568034557236e-4
allele num: 3704
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.12e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

QD
type: SiteQuality
SIO_000300: 9.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.12e-1

FS
type: SiteQuality
SIO_000300: 1.685e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

DP
type: SiteQuality
SIO_000300: 7.0246e4

GenotypeQuality
all individuals: 221
bin: 3.25e1
variant carriers: 127

GenotypeQuality
all individuals: 69
bin: 8.75e1
variant carriers: 69

GenotypeQuality
all individuals: 131
bin: 4.75e1
variant carriers: 120

GenotypeQuality
all individuals: 63
bin: 7.25e1
variant carriers: 58

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 65

GenotypeQuality
all individuals: 160
bin: 2.75e1
variant carriers: 68

GenotypeQuality
all individuals: 766
bin: 6.25e1
variant carriers: 118

GenotypeQuality
all individuals: 96
bin: 9.25e1
variant carriers: 95

GenotypeQuality
all individuals: 130
bin: 6.75e1
variant carriers: 80

GenotypeQuality
all individuals: 1328
bin: 9.75e1
variant carriers: 1328

GenotypeQuality
all individuals: 72
bin: 8.25e1
variant carriers: 72

GenotypeQuality
all individuals: 74
bin: 7.75e1
variant carriers: 68

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 28
allele frequency: 4.516129032258064e-1
allele num: 62
num of homozygotes: 8

African
type: Population
allele count: 55
allele frequency: 3.618421052631579e-1
allele num: 152
num of homozygotes: 10

South Asian
type: Population
allele count: 1977
allele frequency: 4.127348643006263e-1
allele num: 4790
num of homozygotes: 350

East Asian
type: Population
allele count: 68
allele frequency: 6.415094339622641e-1
allele num: 106
num of homozygotes: 23

European (Non-Finnish)
type: Population
allele count: 641
allele frequency: 3.95679012345679e-1
allele num: 1620
num of homozygotes: 111

Other
type: Population
allele count: 27
allele frequency: 3.375e-1
allele num: 80
num of homozygotes: 4

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.174e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

QD
type: SiteQuality
SIO_000300: 1.375e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e-1

DP
type: SiteQuality
SIO_000300: 8.2046e4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

Annotation
canonical: false
consequence: inframe_insertion
consequence: NMD_transcript_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000436614
ensembl transcript: ENST00000496627
gene symbol: GCOM1
hgvsc: ENST00000496627.1:c.41_43dupGCG
hgvsp: ENSP00000436614.1:p.Gly14dup
variant of: http://identifiers.org/hgnc/26424

Annotation
canonical: false
consequence: inframe_insertion
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000379483
ensembl transcript: ENST00000396180
gene symbol: GCOM1
hgvsc: ENST00000396180.1:c.41_43dupGCG
hgvsp: ENSP00000379483.1:p.Gly14dup
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1193
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 139
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3893
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2230
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3781
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2761
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 4.995004995004995e-4
allele num: 2002
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.622e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

QD
type: SiteQuality
SIO_000300: 2.964e1

VQSLOD
type: SiteQuality
SIO_000300: 2.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.95e-2

DP
type: SiteQuality
SIO_000300: 4.5561e4

Annotation
canonical: true
consequence: missense_variant
ensembl gene: ENSG00000263155
ensembl protein: ENSP00000267853
ensembl transcript: ENST00000267853
gene symbol: MYZAP
hgvsc: ENST00000267853.5:c.64C>T
hgvsp: ENSP00000267853.5:p.Pro22Ser
variant of: http://identifiers.org/hgnc/43444

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000255529
ensembl protein: ENSP00000369937
ensembl transcript: ENST00000380563
gene symbol: POLR2M
hgvsc: ENST00000380563.2:c.-2330C>T
variant of: http://identifiers.org/hgnc/14862

GenotypeDepth
all individuals: 1447
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 507
bin: 1.25e1
variant carriers: 2

GenotypeDepth
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4949
bin: 2.5e0
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4859
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 299
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1466
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 8.333333333333333e-2
allele num: 24
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.8596e4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.57e-1

QD
type: SiteQuality
SIO_000300: 1.339e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.33e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.004e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

FS
type: SiteQuality
SIO_000300: 8.343e0

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000369943
ensembl transcript: ENST00000380569
gene symbol: GCOM1
hgvsc: ENST00000380569.2:c.76-4643C>T
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 54
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 754
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2642
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 623
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 241
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 460
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 111
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 268
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 556
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 415
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 798
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 746
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1869
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4426
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 86
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.997867803837953e-4
allele num: 7504
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.3e-1

DP
type: SiteQuality
SIO_000300: 2.88377e5

MQ
type: SiteQuality
SIO_000300: 5.862e1

FS
type: SiteQuality
SIO_000300: 6.298e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.64e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 1.14e1

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.033e0

VQSLOD
type: SiteQuality
SIO_000300: -1.679e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000379483
ensembl transcript: ENST00000396180
gene symbol: GCOM1
hgvsc: ENST00000396180.1:c.76-4609A>T
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 122
bin: 8.75e1
variant carriers: 87

GenotypeDepth
all individuals: 2
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 356
bin: 3.75e1
variant carriers: 6

GenotypeDepth
all individuals: 2146
bin: 2.5e0
variant carriers: 58

GenotypeDepth
all individuals: 89
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 220
bin: 3.25e1
variant carriers: 5

GenotypeDepth
all individuals: 625
bin: 5.25e1
variant carriers: 14

GenotypeDepth
all individuals: 380
bin: 6.75e1
variant carriers: 61

GenotypeDepth
all individuals: 155
bin: 7.5e0
variant carriers: 47

GenotypeDepth
all individuals: 206
bin: 7.75e1
variant carriers: 87

GenotypeDepth
all individuals: 479
bin: 6.25e1
variant carriers: 39

GenotypeDepth
all individuals: 581
bin: 4.75e1
variant carriers: 10

GenotypeDepth
all individuals: 55
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 488
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 604
bin: 5.75e1
variant carriers: 23

GenotypeDepth
all individuals: 266
bin: 7.25e1
variant carriers: 75

GenotypeDepth
all individuals: 615
bin: 9.75e1
variant carriers: 594

GenotypeDepth
all individuals: 169
bin: 8.25e1
variant carriers: 96

GenotypeDepth
all individuals: 124
bin: 9.25e1
variant carriers: 109

GenotypeQuality
all individuals: 103
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 11

GenotypeQuality
all individuals: 205
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 7.5e0
variant carriers: 23

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 14

GenotypeQuality
all individuals: 104
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.25e1
variant carriers: 14

GenotypeQuality
all individuals: 415
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 17

GenotypeQuality
all individuals: 4590
bin: 9.75e1
variant carriers: 1212

GenotypeQuality
all individuals: 126
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 71
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 6

European (Non-Finnish)
type: Population
allele count: 241
allele frequency: 8.827838827838828e-2
allele num: 2730
num of homozygotes: 10

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Other
type: Population
allele count: 16
allele frequency: 1.355932203389831e-1
allele num: 118
num of homozygotes: 1

South Asian
type: Population
allele count: 1002
allele frequency: 1.334932054356515e-1
allele num: 7506
num of homozygotes: 67

African
type: Population
allele count: 15
allele frequency: 7.97872340425532e-2
allele num: 188
num of homozygotes: 2

Latino
type: Population
allele count: 17
allele frequency: 1.847826086956522e-1
allele num: 92
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.899999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

QD
type: SiteQuality
SIO_000300: 1.366e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.31e-1

FS
type: SiteQuality
SIO_000300: 5.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.83e0

DP
type: SiteQuality
SIO_000300: 3.4032e5

MQ
type: SiteQuality
SIO_000300: 5.968e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000369935
ensembl transcript: ENST00000380561
gene symbol: GCOM1
hgvsc: ENST00000380561.2:c.76-4581C>T
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 112
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 574
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 704
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 438
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 299
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2266
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 253
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 769
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 220
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 405
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 745
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 574
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 57
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4425
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2726
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.332267519317879e-4
allele num: 7506
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.085e0

DP
type: SiteQuality
SIO_000300: 2.96679e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.56e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.41e-2

QD
type: SiteQuality
SIO_000300: 1.139e1

FS
type: SiteQuality
SIO_000300: 4.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000369942
ensembl transcript: ENST00000380568
gene symbol: GCOM1
hgvsc: ENST00000380568.3:c.76-4580G>A
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 744
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 110
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 405
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2287
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 220
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 770
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 574
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 704
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 574
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 253
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 299
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 438
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 57
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2051
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4425
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.668378576669112e-4
allele num: 2726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7506
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.979e1

FS
type: SiteQuality
SIO_000300: 2.5e0

DP
type: SiteQuality
SIO_000300: 2.96696e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.267e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.62e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.427e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.53e-2

QD
type: SiteQuality
SIO_000300: 9.130000000000001e0

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000434588
ensembl transcript: ENST00000496101
gene symbol: GCOM1
hgvsc: ENST00000496101.1:c.76-4568G>C
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 220
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 57
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 299
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 117
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 575
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 704
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 252
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2279
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 770
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 744
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 57
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 573
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 405
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 439
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 77
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2009
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4426
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 8.474576271186441e-3
allele num: 118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2726
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.332267519317879e-4
allele num: 7506
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.96764e5

MQ
type: SiteQuality
SIO_000300: 5.944e1

FS
type: SiteQuality
SIO_000300: 4.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

VQSLOD
type: SiteQuality
SIO_000300: -3.159e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.16e-1

QD
type: SiteQuality
SIO_000300: 1.197e1

MQRankSum
type: SiteQuality
SIO_000300: -2.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.92e-2

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000432066
ensembl transcript: ENST00000488175
gene symbol: GCOM1
hgvsc: ENST00000488175.1:c.76-4561G>C
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 300
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 252
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 745
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 221
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 704
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2334
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 770
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 574
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 404
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 58
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 572
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 439
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2062
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4426
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.996802557953637e-4
allele num: 7506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.313e0

MQRankSum
type: SiteQuality
SIO_000300: 5.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.65e-1

DP
type: SiteQuality
SIO_000300: 2.96895e5

ClippingRankSum
type: SiteQuality
SIO_000300: 9.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.406e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.89e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.797e-1

QD
type: SiteQuality
SIO_000300: 1.18e1

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000436922
ensembl transcript: ENST00000482814
gene symbol: GCOM1
hgvsc: ENST00000482814.1:c.76-4556G>C
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 116
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 404
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 574
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 745
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 439
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2341
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 252
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 299
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 220
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 56
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 770
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 705
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 57
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 574
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4426
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.332267519317879e-4
allele num: 7506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2726
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.415e0

QD
type: SiteQuality
SIO_000300: 1.088e1

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

DP
type: SiteQuality
SIO_000300: 2.96842e5

BaseQRankSum
type: SiteQuality
SIO_000300: -8.38e-1

MQ
type: SiteQuality
SIO_000300: 5.873e1

FS
type: SiteQuality
SIO_000300: 1.96e0

VQSLOD
type: SiteQuality
SIO_000300: -1.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.84e-2

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000379483
ensembl transcript: ENST00000396180
gene symbol: GCOM1
hgvsc: ENST00000396180.1:c.76-4524A>G
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2577
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 172
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 243
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 573
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 770
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 116
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 704
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 219
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 299
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 746
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 57
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 439
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 403
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 574
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1973
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4425
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.332267519317879e-4
allele num: 7506
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.97044e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.041e0

VQSLOD
type: SiteQuality
SIO_000300: -9.036999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.275e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.34e-2

FS
type: SiteQuality
SIO_000300: 1.524e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.850000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000436614
ensembl transcript: ENST00000496627
gene symbol: GCOM1
hgvsc: ENST00000496627.1:c.76-44C>G
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 4726
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3446
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7416
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1499
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7653
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6800
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 4400
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 631
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7201
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1531
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 475
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2536
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2170
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6219
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 303
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 874
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1404
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 958
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 419
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7433
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3547
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1877
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3548
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3753
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3282
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31438
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 646
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.362942224484602e-5
allele num: 15716
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.031e-1

QD
type: SiteQuality
SIO_000300: 8.539999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.84e-1

DP
type: SiteQuality
SIO_000300: 2.720562e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.217e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000263155
ensembl protein: ENSP00000457126
ensembl transcript: ENST00000569089
gene symbol: MYZAP
hgvsc: ENST00000569089.1:c.31-38C>T
variant of: http://identifiers.org/hgnc/43444

GenotypeDepth
all individuals: 4487
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 459
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1023
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7653
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3065
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4725
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3446
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1404
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6808
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1407
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7200
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6219
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2170
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 303
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 419
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 958
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7416
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 874
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 631
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3545
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31436
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1960
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1875
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3279
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3753
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8049
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3552
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15752
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.736e0

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

MQRankSum
type: SiteQuality
SIO_000300: -2.22e-1

QD
type: SiteQuality
SIO_000300: 1.344e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

DP
type: SiteQuality
SIO_000300: 2.724478e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.24e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQ
type: SiteQuality
SIO_000300: 5.949e1

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000435028
ensembl transcript: ENST00000463717
gene symbol: GCOM1
hgvsc: ENST00000463717.1:c.76-31delC
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 668
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 419
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1405
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6219
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4612
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2170
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6814
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7416
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3519
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 304
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 441
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7653
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 957
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 631
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4725
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3446
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 873
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7200
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1204
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3603
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8620
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3549
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1961
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3285
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1891
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31435
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3752
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66464
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.729134e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.44e-1

QD
type: SiteQuality
SIO_000300: 1.465e1

FS
type: SiteQuality
SIO_000300: 3.452e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.56e-1

MQ
type: SiteQuality
SIO_000300: 6.012e1

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e0

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000434505
ensembl transcript: ENST00000477282
gene symbol: GCOM1
hgvsc: ENST00000477282.1:c.76-23C>T
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 7653
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 336
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4725
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6888
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 631
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1405
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 957
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7416
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6219
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4970
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 873
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 4259
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7203
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 246
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 303
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 573
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 419
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3446
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2170
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3752
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9656
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1965
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1899
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3550
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31434
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3290
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3672
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503442884204829e-5
allele num: 66514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.155e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

MQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 2.741962e6

QD
type: SiteQuality
SIO_000300: 1.309e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e0

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000369942
ensembl transcript: ENST00000380568
gene symbol: GCOM1
hgvsc: ENST00000380568.3:c.76-18C>G
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 137
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 419
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 329
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 303
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 271
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6903
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4725
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 956
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7654
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7202
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1405
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6219
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2170
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7416
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 873
bin: 9.75e1
variant carriers: 10

GenotypeDepth
all individuals: 5124
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4517
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3446
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 631
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10199
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1917
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3707
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3295
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31433
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1969
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3552
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3755
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66544
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 8.653846153846154e-4
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.446e1

MQ
type: SiteQuality
SIO_000300: 5.944e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

FS
type: SiteQuality
SIO_000300: 2.604e0

DP
type: SiteQuality
SIO_000300: 2.747543e6

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000436922
ensembl transcript: ENST00000482814
gene symbol: GCOM1
hgvsc: ENST00000482814.1:c.76-11C>A
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 632
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 419
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 150
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 863
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 5257
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6930
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7418
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4725
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 956
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 65
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4690
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7204
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7657
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3447
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6221
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 191
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2171
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 303
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1405
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3735
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31430
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10533
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3550
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3303
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502133028901039e-5
allele num: 66572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.92e1

MQRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

FS
type: SiteQuality
SIO_000300: 7.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

QD
type: SiteQuality
SIO_000300: 1.622e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.6e-2

DP
type: SiteQuality
SIO_000300: 2.750466e6

VQSLOD
type: SiteQuality
SIO_000300: -5.1e-3

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000435774
ensembl transcript: ENST00000460962
gene symbol: GCOM1
hgvsc: ENST00000460962.1:c.76-11C>T
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 1405
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2171
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4690
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 863
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 150
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 65
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 956
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 632
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4725
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 191
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 419
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7657
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5257
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6930
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7204
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 303
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3447
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7418
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6221
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10533
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3303
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3550
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31430
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3735
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3754
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.140243153628883e-5
allele num: 16286
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

DP
type: SiteQuality
SIO_000300: 2.750466e6

FS
type: SiteQuality
SIO_000300: 7.96e-1

QD
type: SiteQuality
SIO_000300: 1.622e1

MQ
type: SiteQuality
SIO_000300: 5.92e1

VQSLOD
type: SiteQuality
SIO_000300: -5.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.6e-2

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000369942
ensembl transcript: ENST00000380568
gene symbol: GCOM1
hgvsc: ENST00000380568.3:c.76-6T>C
variant of: http://identifiers.org/hgnc/26424

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000436922
ensembl transcript: ENST00000482814
gene symbol: GCOM1
hgvsc: ENST00000482814.1:c.76-6T>C
variant of: http://identifiers.org/hgnc/26424

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000436614
ensembl transcript: ENST00000496627
gene symbol: GCOM1
hgvsc: ENST00000496627.1:c.76-6T>C
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1405
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6931
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 864
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 632
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 956
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4723
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7203
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7655
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 153
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4725
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 103
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5326
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6221
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7417
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 303
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3447
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2171
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3746
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10654
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31429
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 169
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3551
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3307
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3753
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1942
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.118453255017132e-5
allele num: 16344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.471e1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e0

DP
type: SiteQuality
SIO_000300: 2.751986e6

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-2

MQ
type: SiteQuality
SIO_000300: 5.97e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.249e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.099e0

FS
type: SiteQuality
SIO_000300: 3.866e0

Annotation
canonical: false
consequence: splice_acceptor_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000436614
ensembl transcript: ENST00000496627
gene symbol: GCOM1
hgvsc: ENST00000496627.1:c.76-1G>A
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3447
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6939
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 111
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1405
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6221
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4725
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7418
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 956
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5387
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 303
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4732
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7655
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7205
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 632
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2171
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 863
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3305
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1943
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31428
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3751
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10741
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3551
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500915558490679e-5
allele num: 66626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.922e1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

DP
type: SiteQuality
SIO_000300: 2.753232e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.318e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e0

VQSLOD
type: SiteQuality
SIO_000300: -4.461e-1

QD
type: SiteQuality
SIO_000300: 1.526e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-2

FS
type: SiteQuality
SIO_000300: 3.577e0

Annotation
canonical: false
consequence: missense_variant
consequence: splice_region_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000461898
ensembl transcript: ENST00000574161
gene symbol: GCOM1
hgvsc: ENST00000574161.1:c.76G>A
hgvsp: ENSP00000461898.1:p.Ala26Thr
variant of: http://identifiers.org/hgnc/26424

Annotation
canonical: false
consequence: missense_variant
consequence: splice_region_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000432066
ensembl transcript: ENST00000488175
gene symbol: GCOM1
hgvsc: ENST00000488175.1:c.76G>A
hgvsp: ENSP00000432066.1:p.Ala26Thr
variant of: http://identifiers.org/hgnc/26424

Annotation
canonical: false
consequence: missense_variant
consequence: splice_region_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000435774
ensembl transcript: ENST00000460962
gene symbol: GCOM1
hgvsc: ENST00000460962.1:c.76G>A
hgvsp: ENSP00000435774.1:p.Ala26Thr
variant of: http://identifiers.org/hgnc/26424

Annotation
canonical: false
consequence: missense_variant
consequence: splice_region_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000436922
ensembl transcript: ENST00000482814
gene symbol: GCOM1
hgvsc: ENST00000482814.1:c.76G>A
hgvsp: ENSP00000436922.1:p.Ala26Thr
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 418
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7655
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5394
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 632
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4725
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1405
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2171
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7417
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 862
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 67
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6944
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7208
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 303
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6221
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3447
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4728
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 956
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3305
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1942
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10730
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3553
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3748
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31428
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.0960741282614e-5
allele num: 16404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.24e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.742e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

DP
type: SiteQuality
SIO_000300: 2.753129e6

QD
type: SiteQuality
SIO_000300: 1.432e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.93e-1

Annotation
canonical: false
consequence: missense_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000434588
ensembl transcript: ENST00000496101
gene symbol: GCOM1
hgvsc: ENST00000496101.1:c.83T>C
hgvsp: ENSP00000434588.1:p.Val28Ala
variant of: http://identifiers.org/hgnc/26424

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000369942
ensembl transcript: ENST00000380568
gene symbol: GCOM1
hgvsc: ENST00000380568.3:c.83T>C
hgvsp: ENSP00000369942.3:p.Val28Ala
variant of: http://identifiers.org/hgnc/26424

Annotation
canonical: false
consequence: missense_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000434505
ensembl transcript: ENST00000477282
gene symbol: GCOM1
hgvsc: ENST00000477282.1:c.83T>C
hgvsp: ENSP00000434505.1:p.Val28Ala
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 4726
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 956
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7658
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2171
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 632
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 68
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5433
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7207
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3446
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6221
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4768
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1405
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 303
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 864
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 7417
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6945
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1944
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1965
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3755
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3760
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10833
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3551
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31430
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3306
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.038036213391664e-4
allele num: 16458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.39e-1

FS
type: SiteQuality
SIO_000300: 5.4e-1

DP
type: SiteQuality
SIO_000300: 2.75455e6

QD
type: SiteQuality
SIO_000300: 1.489e1

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000465231
ensembl transcript: ENST00000587652
gene symbol: GCOM1
hgvsc: ENST00000587652.1:c.91C>A
hgvsp: ENSP00000465231.1:p.Leu31Ile
variant of: http://identifiers.org/hgnc/26424

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000459294
ensembl transcript: ENST00000572390
gene symbol: GCOM1
hgvsc: ENST00000572390.1:c.91C>A
hgvsp: ENSP00000459294.1:p.Leu31Ile
variant of: http://identifiers.org/hgnc/26424

Annotation
canonical: false
consequence: missense_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000434505
ensembl transcript: ENST00000477282
gene symbol: GCOM1
hgvsc: ENST00000477282.1:c.91C>A
hgvsp: ENSP00000434505.1:p.Leu31Ile
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1404
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3446
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2171
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 419
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 5461
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4726
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 955
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4765
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7418
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 6218
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7656
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 300
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 633
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 6956
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 867
bin: 9.75e1
variant carriers: 50

GenotypeDepth
all individuals: 7204
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3549
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31427
bin: 9.75e1
variant carriers: 56

GenotypeQuality
all individuals: 1966
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10862
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3753
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3762
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3306
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 54
allele frequency: 8.09910909799922e-4
allele num: 66674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.92270717169775e-4
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.943e0

DP
type: SiteQuality
SIO_000300: 2.760115e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.11e0

QD
type: SiteQuality
SIO_000300: 1.215e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.41e-1

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000369942
ensembl transcript: ENST00000380568
gene symbol: GCOM1
hgvsc: ENST00000380568.3:c.91C>T
hgvsp: ENST00000380568.3:c.91C>T(p.%3D)
variant of: http://identifiers.org/hgnc/26424

Annotation
canonical: false
consequence: synonymous_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000434505
ensembl transcript: ENST00000477282
gene symbol: GCOM1
hgvsc: ENST00000477282.1:c.91C>T
hgvsp: ENST00000477282.1:c.91C>T(p.%3D)
variant of: http://identifiers.org/hgnc/26424

Annotation
canonical: false
consequence: synonymous_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000436922
ensembl transcript: ENST00000482814
gene symbol: GCOM1
hgvsc: ENST00000482814.1:c.91C>T
hgvsp: ENST00000482814.1:c.91C>T(p.%3D)
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6956
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5461
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 867
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2171
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4726
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4765
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 955
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 300
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7204
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3446
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6218
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 419
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1404
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7656
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7418
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 633
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3306
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3762
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31427
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3549
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10862
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3753
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499835018148004e-5
allele num: 66674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.215e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.943e0

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-1

DP
type: SiteQuality
SIO_000300: 2.760115e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

VQSLOD
type: SiteQuality
SIO_000300: 5.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000369935
ensembl transcript: ENST00000380561
gene symbol: GCOM1
hgvsc: ENST00000380561.2:c.94C>T
hgvsp: ENSP00000369935.2:p.Arg32Trp
variant of: http://identifiers.org/hgnc/26424

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000369933
ensembl transcript: ENST00000380560
gene symbol: GCOM1
hgvsc: ENST00000380560.2:c.94C>T
hgvsp: ENSP00000369933.2:p.Arg32Trp
variant of: http://identifiers.org/hgnc/26424

Annotation
canonical: false
consequence: missense_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000435028
ensembl transcript: ENST00000463717
gene symbol: GCOM1
hgvsc: ENST00000463717.1:c.94C>T
hgvsp: ENSP00000435028.1:p.Arg32Trp
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 1408
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4729
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6964
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7212
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2177
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 633
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5470
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7666
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4767
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 816
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 957
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 300
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6226
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3448
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7422
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3308
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1969
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10880
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31406
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3763
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3757
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3553
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-1

MQ
type: SiteQuality
SIO_000300: 5.991e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.24e-1

DP
type: SiteQuality
SIO_000300: 2.750808e6

FS
type: SiteQuality
SIO_000300: 3.172e0

QD
type: SiteQuality
SIO_000300: 1.076e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-2

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000369935
ensembl transcript: ENST00000380561
gene symbol: GCOM1
hgvsc: ENST00000380561.2:c.101C>T
hgvsp: ENSP00000369935.2:p.Thr34Ile
variant of: http://identifiers.org/hgnc/26424

Annotation
canonical: false
consequence: missense_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000436922
ensembl transcript: ENST00000482814
gene symbol: GCOM1
hgvsc: ENST00000482814.1:c.101C>T
hgvsp: ENSP00000436922.1:p.Thr34Ile
variant of: http://identifiers.org/hgnc/26424

Annotation
canonical: false
consequence: missense_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000436614
ensembl transcript: ENST00000496627
gene symbol: GCOM1
hgvsc: ENST00000496627.1:c.101C>T
hgvsp: ENSP00000436614.1:p.Thr34Ile
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 7666
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4729
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 633
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2177
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4781
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 300
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3448
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6227
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5481
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 418
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1408
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 957
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7422
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6962
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7210
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 815
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3554
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1968
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31404
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3763
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10916
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3757
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1949
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3309
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.884615384615385e-4
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.133e1

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.142e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.78e-1

FS
type: SiteQuality
SIO_000300: 1.116e0

DP
type: SiteQuality
SIO_000300: 2.751189e6

MQRankSum
type: SiteQuality
SIO_000300: 9.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.77e-1

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000461898
ensembl transcript: ENST00000574161
gene symbol: GCOM1
hgvsc: ENST00000574161.1:c.102C>T
hgvsp: ENST00000574161.1:c.102C>T(p.%3D)
variant of: http://identifiers.org/hgnc/26424

Annotation
canonical: false
consequence: synonymous_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000434588
ensembl transcript: ENST00000496101
gene symbol: GCOM1
hgvsc: ENST00000496101.1:c.102C>T
hgvsp: ENST00000496101.1:c.102C>T(p.%3D)
variant of: http://identifiers.org/hgnc/26424

Annotation
canonical: false
consequence: synonymous_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000436614
ensembl transcript: ENST00000496627
gene symbol: GCOM1
hgvsc: ENST00000496627.1:c.102C>T
hgvsp: ENST00000496627.1:c.102C>T(p.%3D)
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 6227
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6968
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 4729
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4775
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 957
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1408
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 300
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7213
bin: 3.75e1
variant carriers: 2

GenotypeDepth
all individuals: 5482
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7667
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3448
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2178
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 7422
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 815
bin: 9.75e1
variant carriers: 12

GenotypeDepth
all individuals: 633
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 416
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3310
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3764
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10909
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1968
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31407
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3553
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3757
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.636363636363636e-4
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.349123070004497e-4
allele num: 66710
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.29e-1

FS
type: SiteQuality
SIO_000300: 1.112e0

VQSLOD
type: SiteQuality
SIO_000300: 2.86e0

QD
type: SiteQuality
SIO_000300: 1.137e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 2.752319e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000369935
ensembl transcript: ENST00000380561
gene symbol: GCOM1
hgvsc: ENST00000380561.2:c.103G>A
hgvsp: ENSP00000369935.2:p.Val35Ile
variant of: http://identifiers.org/hgnc/26424

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000465231
ensembl transcript: ENST00000587652
gene symbol: GCOM1
hgvsc: ENST00000587652.1:c.103G>A
hgvsp: ENSP00000465231.1:p.Val35Ile
variant of: http://identifiers.org/hgnc/26424

Annotation
canonical: false
consequence: missense_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000434505
ensembl transcript: ENST00000477282
gene symbol: GCOM1
hgvsc: ENST00000477282.1:c.103G>A
hgvsp: ENSP00000434505.1:p.Val35Ile
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 416
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5492
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4775
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6968
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4731
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6229
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7422
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7670
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3449
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2177
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 300
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7213
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 957
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1408
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 632
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 803
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31397
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3762
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3554
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1968
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3759
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3310
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10916
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.923446816695518e-4
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

VQSLOD
type: SiteQuality
SIO_000300: 8.139999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.349e0

MQRankSum
type: SiteQuality
SIO_000300: -2.87e-1

FS
type: SiteQuality
SIO_000300: 1.106e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.219e1

DP
type: SiteQuality
SIO_000300: 2.750172e6

MQ
type: SiteQuality
SIO_000300: 5.955e1

Annotation
canonical: false
consequence: missense_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000436614
ensembl transcript: ENST00000496627
gene symbol: GCOM1
hgvsc: ENST00000496627.1:c.106C>T
hgvsp: ENSP00000436614.1:p.Pro36Ser
variant of: http://identifiers.org/hgnc/26424

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000461898
ensembl transcript: ENST00000574161
gene symbol: GCOM1
hgvsc: ENST00000574161.1:c.106C>T
hgvsp: ENSP00000461898.1:p.Pro36Ser
variant of: http://identifiers.org/hgnc/26424

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000255529
ensembl protein: ENSP00000369937
ensembl transcript: ENST00000380563
gene symbol: POLR2M
hgvsc: ENST00000380563.2:c.-2288C>T
variant of: http://identifiers.org/hgnc/14862

GenotypeDepth
all individuals: 2177
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4790
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7212
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6967
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4731
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3449
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 416
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7670
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 799
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 6230
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 632
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 300
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 957
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7424
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5488
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1408
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3555
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10938
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3309
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1968
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3759
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31396
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3762
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1948
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997691777331455e-5
allele num: 66718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.749931e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.371e0

VQSLOD
type: SiteQuality
SIO_000300: -1.785e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.993e1

MQRankSum
type: SiteQuality
SIO_000300: 1.61e0

QD
type: SiteQuality
SIO_000300: 1.107e1

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000379483
ensembl transcript: ENST00000396180
gene symbol: GCOM1
hgvsc: ENST00000396180.1:c.107C>T
hgvsp: ENSP00000379483.1:p.Pro36Leu
variant of: http://identifiers.org/hgnc/26424

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000369942
ensembl transcript: ENST00000380568
gene symbol: GCOM1
hgvsc: ENST00000380568.3:c.107C>T
hgvsp: ENSP00000369942.3:p.Pro36Leu
variant of: http://identifiers.org/hgnc/26424

Annotation
canonical: true
consequence: missense_variant
ensembl gene: ENSG00000137878
ensembl protein: ENSP00000369943
ensembl transcript: ENST00000380569
gene symbol: GCOM1
hgvsc: ENST00000380569.2:c.107C>T
hgvsp: ENSP00000369943.2:p.Pro36Leu
variant of: http://identifiers.org/hgnc/26424

GenotypeDepth
all individuals: 7214
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1409
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 632
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 796
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 7670
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4787
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6965
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 957
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4731
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3449
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 300
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5490
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7426
bin: 4.75e1
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GenotypeDepth
all individuals: 19
bin: 7.5e0
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GenotypeDepth
all individuals: 6230
bin: 5.25e1
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GenotypeDepth
all individuals: 416
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2177
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.749219e6

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.214e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.706e0

MQRankSum
type: SiteQuality
SIO_000300: 8.61e-1

QD
type: SiteQuality
SIO_000300: 1.201e1

GenotypeQuality
all individuals: 1599
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2474
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.077775383952479e-5
allele num: 64982
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.332089552238806e-4
allele num: 8576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.123595505617978e-3
allele num: 890
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.187e1

FS
type: SiteQuality
SIO_000300: 2.437e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

DP
type: SiteQuality
SIO_000300: 1.767505e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165772907437631e-4
allele num: 8578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.98e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.213e0

MQRankSum
type: SiteQuality
SIO_000300: 1.81e0

DP
type: SiteQuality
SIO_000300: 1.767399e6

QD
type: SiteQuality
SIO_000300: 8.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.635e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.107e-1

GenotypeQuality
all individuals: 8554
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538935056940597e-5
allele num: 64980
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.424e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.97e-1

DP
type: SiteQuality
SIO_000300: 1.767589e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.400000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.774e1

MQ
type: SiteQuality
SIO_000300: 5.862e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538792970793709e-5
allele num: 64986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.767361e6

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 2.158e0

QD
type: SiteQuality
SIO_000300: 9.029999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53997782431933e-5
allele num: 64936
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.827e0

DP
type: SiteQuality
SIO_000300: 1.766729e6

MQRankSum
type: SiteQuality
SIO_000300: -1.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.564e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

QD
type: SiteQuality
SIO_000300: 1.419e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.82e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

GenotypeQuality
all individuals: 915
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
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GenotypeQuality
all individuals: 1603
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539835545563734e-5
allele num: 64942
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.765e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

MQRankSum
type: SiteQuality
SIO_000300: -8.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e-1

DP
type: SiteQuality
SIO_000300: 1.766827e6

QD
type: SiteQuality
SIO_000300: 1.325e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.813e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.65e-1

GenotypeQuality
all individuals: 2478
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8553
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540642139643804e-5
allele num: 64908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166861143523921e-4
allele num: 8570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.02e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 1.766083e6

QD
type: SiteQuality
SIO_000300: 6.31e0

VQSLOD
type: SiteQuality
SIO_000300: -1.126e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.98e-1

GenotypeQuality
all individuals: 915
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.167133520074697e-4
allele num: 8568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.66e-1

QD
type: SiteQuality
SIO_000300: 9.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.54e-1

FS
type: SiteQuality
SIO_000300: 1.129e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.53e-1

DP
type: SiteQuality
SIO_000300: 1.766056e6

MQ
type: SiteQuality
SIO_000300: 5.953e1

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2477
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.242e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 1.765095e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.769e0

FS
type: SiteQuality
SIO_000300: 5.5e0

QD
type: SiteQuality
SIO_000300: 8.23e0

GenotypeQuality
all individuals: 2467
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64660
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-2

DP
type: SiteQuality
SIO_000300: 1.757943e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.355e0

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-1

QD
type: SiteQuality
SIO_000300: 1.232e1

FS
type: SiteQuality
SIO_000300: 1.897e0

VQSLOD
type: SiteQuality
SIO_000300: 3.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e0

GenotypeQuality
all individuals: 2520
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37927
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.683570684265369e-5
allele num: 11516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.09520861706079e-5
allele num: 64616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.36e0

MQ
type: SiteQuality
SIO_000300: 5.852e1

MQRankSum
type: SiteQuality
SIO_000300: 5.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.44e-1

DP
type: SiteQuality
SIO_000300: 1.756511e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.482e0

QD
type: SiteQuality
SIO_000300: 1.067e1

GenotypeQuality
all individuals: 8474
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.850248575239481e-4
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.755634e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 5.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-2

QD
type: SiteQuality
SIO_000300: 1.028e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.6e-2

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 102
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.54933068914229e-5
allele num: 64544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.334e0

MQ
type: SiteQuality
SIO_000300: 5.66e1

DP
type: SiteQuality
SIO_000300: 1.754362e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.153e0

FS
type: SiteQuality
SIO_000300: 3.457e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

QD
type: SiteQuality
SIO_000300: 4.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.688e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.63e-1

GenotypeQuality
all individuals: 717
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3367
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.136363636363636e-3
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64458
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.170686022008897e-4
allele num: 8542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.785e0

FS
type: SiteQuality
SIO_000300: 3.236e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

QD
type: SiteQuality
SIO_000300: 1.071e1

DP
type: SiteQuality
SIO_000300: 1.751581e6

VQSLOD
type: SiteQuality
SIO_000300: 8.75e-1

GenotypeQuality
all individuals: 2448
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.2999788000848e-4
allele num: 9434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.69414014953921e-5
allele num: 11502
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.316e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.11e0

FS
type: SiteQuality
SIO_000300: 1.162e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

MQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

DP
type: SiteQuality
SIO_000300: 1.750388e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e-1

GenotypeQuality
all individuals: 914
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8444
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64324
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.066488716330988e-5
allele num: 16484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

DP
type: SiteQuality
SIO_000300: 1.747373e6

VQSLOD
type: SiteQuality
SIO_000300: -1.171e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

FS
type: SiteQuality
SIO_000300: 1.452e0

MQRankSum
type: SiteQuality
SIO_000300: -4.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9332
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.742160278745645e-4
allele num: 11480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.59e0

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

QD
type: SiteQuality
SIO_000300: 1.147e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQ
type: SiteQuality
SIO_000300: 5.934e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.16e-1

DP
type: SiteQuality
SIO_000300: 1.7429e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e-1

GenotypeQuality
all individuals: 63
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8402
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64142
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.710801393728223e-5
allele num: 11480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e0

VQSLOD
type: SiteQuality
SIO_000300: -1.734e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.595e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 3.878e0

QD
type: SiteQuality
SIO_000300: 7.28e0

DP
type: SiteQuality
SIO_000300: 1.741448e6

MQ
type: SiteQuality
SIO_000300: 5.912e1