14-103871654-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103871654
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103871654
    reference: chr 14
allele count: 1
allele frequency: 9.359439931114522e-6
allele num: 106844
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.243+50T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.243+50T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560603
  gene symbol: MARK3
  hgvsc: ENST00000560603.1:n.513+50T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.243+50T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559328
  gene symbol: MARK3
  hgvsc: ENST00000559328.1:n.479+50T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.243+50T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.243+50T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.269+50T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.243+50T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.243+50T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.243+50T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.207+50T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.134+50T>C
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11251
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7982
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum

14-103894692-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103894692
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103894693
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 21728
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.244-28dupA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-20560dupA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.244-28dupA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.135-28dupA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.208-28dupA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.135-28dupA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560603
  gene symbol: MARK3
  hgvsc: ENST00000560603.1:n.514-28dupA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.244-28dupA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559328
  gene symbol: MARK3
  hgvsc: ENST00000559328.1:n.480-28dupA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.244-28dupA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.244-28dupA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.244-28dupA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.244-28dupA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.270-28dupA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.135-28dupA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.52-28dupA
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32073
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5883
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/14-103894702-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103894702
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103894702
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 21970
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.244-22A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.270-22A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.244-22A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.244-22A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.244-22A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.244-22A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.52-22A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.244-22A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.135-22A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559328
  gene symbol: MARK3
  hgvsc: ENST00000559328.1:n.480-22A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.208-22A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-20554A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560603
  gene symbol: MARK3
  hgvsc: ENST00000560603.1:n.514-22A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.135-22A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.244-22A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.135-22A>C
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ

14-103894704-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103894704
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103894704
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 22000
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560603
  gene symbol: MARK3
  hgvsc: ENST00000560603.1:n.514-20A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559328
  gene symbol: MARK3
  hgvsc: ENST00000559328.1:n.480-20A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.135-20A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.244-20A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.208-20A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.244-20A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-20552A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.244-20A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.135-20A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.244-20A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.244-20A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.135-20A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.270-20A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.244-20A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.52-20A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.244-20A>G
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31994
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9139
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

14-103894706-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103894706
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103894706
    reference: chr 14
allele count: 142
allele frequency: 6.420110317388553e-3
allele num: 22118
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.244-18A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.270-18A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.244-18A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.244-18A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.135-18A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560603
  gene symbol: MARK3
  hgvsc: ENST00000560603.1:n.514-18A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559328
  gene symbol: MARK3
  hgvsc: ENST00000559328.1:n.480-18A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.244-18A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-20550A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.52-18A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.244-18A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.135-18A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.208-18A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.244-18A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.244-18A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.135-18A>G
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9987
  bin: 7.5e0
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 1.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
num of homozygotes: 1
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

14-103894738-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103894738
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103894738
    reference: chr 14
allele count: 1
allele frequency: 3.995844321905218e-5
allele num: 25026
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.258A>G
  hgvsp: ENSP00000335347.5:p.Ile86Met
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.258A>G
  hgvsp: ENSP00000450772.1:p.Ile86Met
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.258A>G
  hgvsp: ENSP00000216288.7:p.Ile86Met
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.258A>G
  hgvsp: ENSP00000303698.9:p.Ile86Met
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.149A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.149A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.149A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.222A>G
  hgvsp: ENSP00000452829.1:p.Ile74Met
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.284A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.258A>G
  hgvsp: ENSP00000402104.3:p.Ile86Met
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.258A>G
  hgvsp: ENSP00000411397.2:p.Ile86Met
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.66A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.258A>G
  hgvsp: ENSP00000408092.2:p.Ile86Met
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559328
  gene symbol: MARK3
  hgvsc: ENST00000559328.1:n.494A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560603
  gene symbol: MARK3
  hgvsc: ENST00000560603.1:n.528A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-20518A>G
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ile86Met
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

14-103894741-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103894741
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103894741
    reference: chr 14
allele count: 1
allele frequency: 3.93360081818897e-5
allele num: 25422
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.261T>C
  hgvsp: ENST00000303622.9:c.261T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.152T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.261T>C
  hgvsp: ENST00000416682.2:c.261T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560603
  gene symbol: MARK3
  hgvsc: ENST00000560603.1:n.531T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-20515T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.261T>C
  hgvsp: ENST00000216288.7:c.261T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.287T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.261T>C
  hgvsp: ENST00000429436.2:c.261T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.69T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.152T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.261T>C
  hgvsp: ENST00000335102.5:c.261T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.261T>C
  hgvsp: ENST00000553942.1:c.261T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.225T>C
  hgvsp: ENST00000561225.1:c.225T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.152T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559328
  gene symbol: MARK3
  hgvsc: ENST00000559328.1:n.497T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.261T>C
  hgvsp: ENST00000440884.3:c.261T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile87Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

14-103894760-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103894760
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103894760
    reference: chr 14
allele count: 1
allele frequency: 3.653902367728734e-5
allele num: 27368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.171C>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.280C>G
  hgvsp: ENSP00000303698.9:p.Pro94Ala
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.280C>G
  hgvsp: ENSP00000402104.3:p.Pro94Ala
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.244C>G
  hgvsp: ENSP00000452829.1:p.Pro82Ala
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.171C>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.280C>G
  hgvsp: ENSP00000408092.2:p.Pro94Ala
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.171C>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.280C>G
  hgvsp: ENSP00000216288.7:p.Pro94Ala
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.88C>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559328
  gene symbol: MARK3
  hgvsc: ENST00000559328.1:n.516C>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-20496C>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.280C>G
  hgvsp: ENSP00000411397.2:p.Pro94Ala
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.280C>G
  hgvsp: ENSP00000335347.5:p.Pro94Ala
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560603
  gene symbol: MARK3
  hgvsc: ENST00000560603.1:n.550C>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.280C>G
  hgvsp: ENSP00000450772.1:p.Pro94Ala
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.306C>G
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro94Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

14-103894790-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103894790
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103894790
    reference: chr 14
allele count: 1
allele frequency: 3.699319325244155e-5
allele num: 27032
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.297+13C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.297+13C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.297+13C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.188+13C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.297+13C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.188+13C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.105+13C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.261+13C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.188+13C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.297+13C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.297+13C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-20466C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.297+13C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.323+13C>T
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19736
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP

14-103894792-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103894792
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103894792
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 26942
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.297+15A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.297+15A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.297+15A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.188+15A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.188+15A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.297+15A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-20464A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.261+15A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.297+15A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.297+15A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.105+15A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.323+15A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.297+15A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.188+15A>G
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19112
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

14-103894818-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103894818
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103894818
    reference: chr 14
allele count: 2
allele frequency: 8.185315543914218e-5
allele num: 24434
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.261+41C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.297+41C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.297+41C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.297+41C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.297+41C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.297+41C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.188+41C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.323+41C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-20438C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.105+41C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.297+41C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.188+41C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.188+41C>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.297+41C>T
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13576
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 28404
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

14-103894819-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103894819
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103894819
    reference: chr 14
allele count: 1
allele frequency: 4.140101018464851e-5
allele num: 24154
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-20437G>A
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.297+42G>A
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.323+42G>A
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.105+42G>A
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.297+42G>A
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.297+42G>A
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.188+42G>A
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.297+42G>A
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.261+42G>A
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.188+42G>A
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.297+42G>A
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.297+42G>A
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.297+42G>A
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.188+42G>A
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28378
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

14-103915206-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915206
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915205
    reference: chr 14
allele count: 1
allele frequency: 9.084137279482568e-6
allele num: 110082
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-48delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-48delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-48delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-48delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-48delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-48delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-48delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-48delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-48delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-48delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-48delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-48delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-48delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-48delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-48delA
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: TA
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

14-103915207-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915207
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915207
    reference: chr 14
allele count: 1
allele frequency: 9.267668810587385e-6
allele num: 107902
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-49A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-49A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-49A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-49A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-49A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-49A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-49A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-49A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-49A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-49A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-49A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-49A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-49A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-49A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-49A>G
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/14-103915208-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915208
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915208
    reference: chr 14
allele count: 1
allele frequency: 9.430581489654651e-6
allele num: 106038
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-48A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-48A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-48A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-48A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-48A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-48A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-48A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-48A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-48A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-48A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-48A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-48A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-48A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-48A>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-48A>C
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

14-103915209-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915209
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915209
    reference: chr 14
allele count: 1
allele frequency: 9.451081203689702e-6
allele num: 105808
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-47T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-47T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-47T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-47T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-47T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-47T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-47T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-47T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-47T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-47T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-47T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-47T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-47T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-47T>C
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-47T>C
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

14-103915209-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915209
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915209
    reference: chr 14
allele count: 1
allele frequency: 9.451081203689702e-6
allele num: 105808
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-47T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-47T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-47T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-47T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-47T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-47T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-47T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-47T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-47T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-47T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-47T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-47T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-47T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-47T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-47T>G
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

14-103915210-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915210
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915210
    reference: chr 14
allele count: 1
allele frequency: 9.473464825025105e-6
allele num: 105558
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-46A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-46A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-46A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-46A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-46A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-46A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-46A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-46A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-46A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-46A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-46A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-46A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-46A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-46A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-46A>G
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5691
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff

14-103915211-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915211
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915211
    reference: chr 14
allele count: 1
allele frequency: 9.468620990039011e-6
allele num: 105612
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-45A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-45A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-45A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-45A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-45A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-45A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-45A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-45A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-45A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-45A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-45A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-45A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-45A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-45A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-45A>G
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

14-103915211-ACTTGT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915211
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915206
    reference: chr 14
allele count: 3
allele frequency: 2.840586297011703e-5
allele num: 105612
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-44_298-40delCTTGT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-44_298-40delCTTGT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-44_106-40delCTTGT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-44_244-40delCTTGT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-44_298-40delCTTGT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-44_298-40delCTTGT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-44_298-40delCTTGT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-44_189-40delCTTGT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-44_262-40delCTTGT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-44_298-40delCTTGT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-44_283-40delCTTGT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-44_298-40delCTTGT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-44_324-40delCTTGT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-44_182-40delCTTGT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-44_189-40delCTTGT
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: ACTTGT
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum

14-103915212-CTTGTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915212
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915207
    reference: chr 14
allele count: 283
allele frequency: 3.287868578200153e-3
allele num: 86074
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-40_298-36delTGTTG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-40_182-36delTGTTG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-40_324-36delTGTTG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-40_298-36delTGTTG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-40_189-36delTGTTG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-40_298-36delTGTTG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-40_298-36delTGTTG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-40_283-36delTGTTG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-40_244-36delTGTTG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-40_189-36delTGTTG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-40_298-36delTGTTG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-40_298-36delTGTTG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-40_106-36delTGTTG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-40_262-36delTGTTG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-40_298-36delTGTTG
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4721
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3634
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 3.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
num of homozygotes: 4
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: CTTGTG
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

14-103915215-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915215
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915214
    reference: chr 14
allele count: 1
allele frequency: 8.802351988451315e-6
allele num: 113606
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-40delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-40delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-40delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-40delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-40delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-40delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-40delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-40delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-40delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-40delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-40delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-40delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-40delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-40delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-40delT
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4056
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: GT
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

14-103915215-GTGTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915215
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915211
    reference: chr 14
allele count: 31785
allele frequency: 2.79782757952925e-1
allele num: 113606
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-40_244-37delTGTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-40_283-37delTGTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-40_298-37delTGTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-40_182-37delTGTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-40_298-37delTGTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-40_324-37delTGTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-40_189-37delTGTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-40_262-37delTGTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-40_298-37delTGTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-40_298-37delTGTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-40_298-37delTGTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-40_189-37delTGTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-40_298-37delTGTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-40_298-37delTGTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-40_106-37delTGTT
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 5.25e1
  variant carriers: 2312
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 8.75e1
  variant carriers: 511
genotype depth: GenotypeDepth
  all individuals: 4164
  bin: 6.25e1
  variant carriers: 2000
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 9.25e1
  variant carriers: 403
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 1.75e1
  variant carriers: 1547
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 7.5e0
  variant carriers: 346
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 3.75e1
  variant carriers: 1571
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 7.25e1
  variant carriers: 1308
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 3.25e1
  variant carriers: 1523
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 6.75e1
  variant carriers: 1737
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 1.25e1
  variant carriers: 899
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 2.25e1
  variant carriers: 1790
genotype quality: GenotypeQuality
num of homozygotes: 4566
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: GTGTT
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

14-103915217-GTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915217
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915215
    reference: chr 14
allele count: 1
allele frequency: 1.705029838022165e-5
allele num: 58650
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-38_189-37delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-38_298-37delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-38_298-37delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-38_298-37delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-38_106-37delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-38_298-37delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-38_189-37delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-38_324-37delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-38_298-37delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-38_298-37delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-38_298-37delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-38_262-37delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-38_182-37delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-38_244-37delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-38_283-37delTT
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4450
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: GTT
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

14-103915219-TGGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915219
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915216
    reference: chr 14
allele count: 2
allele frequency: 3.217296184286725e-5
allele num: 62164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-33_189-31delGGG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-33_324-31delGGG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-33_298-31delGGG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-33_283-31delGGG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-33_298-31delGGG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-33_182-31delGGG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-33_298-31delGGG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-33_298-31delGGG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-33_262-31delGGG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-33_244-31delGGG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-33_298-31delGGG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-33_106-31delGGG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-33_298-31delGGG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-33_298-31delGGG
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-33_189-31delGGG
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: TGGG
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

14-103915224-GGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915224
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915222
    reference: chr 14
allele count: 9
allele frequency: 8.296613138147827e-5
allele num: 108478
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-31_298-30delGA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-31_189-30delGA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-31_106-30delGA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-31_298-30delGA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-31_298-30delGA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-31_283-30delGA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-31_298-30delGA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-31_189-30delGA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-31_298-30delGA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-31_324-30delGA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-31_182-30delGA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-31_298-30delGA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-31_244-30delGA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-31_298-30delGA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-31_262-30delGA
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4059
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4303
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3253
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: GGA
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

14-103915225-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915225
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915225
    reference: chr 14
allele count: 1
allele frequency: 8.646480017984679e-6
allele num: 115654
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-31G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-31G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-31G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-31G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-31G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-31G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-31G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-31G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-31G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-31G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-31G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-31G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-31G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-31G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-31G>T
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4095
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

14-103915225-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915225
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915224
    reference: chr 14
allele count: 31341
allele frequency: 2.709893302436578e-1
allele num: 115654
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-30delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-30delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-30delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-30delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-30delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-30delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-30delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-30delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-30delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-30delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-30delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-30delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-30delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-30delA
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-30delA
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 3.25e1
  variant carriers: 1538
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 6.75e1
  variant carriers: 1927
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 2.75e1
  variant carriers: 1535
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 8.75e1
  variant carriers: 822
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 7.25e1
  variant carriers: 1654
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 6.25e1
  variant carriers: 2106
genotype depth: GenotypeDepth
  all individuals: 4095
  bin: 5.25e1
  variant carriers: 2079
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 9.25e1
  variant carriers: 631
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 2.25e1
  variant carriers: 1311
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 4.25e1
  variant carriers: 1663
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 7.75e1
  variant carriers: 1403
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 8.25e1
  variant carriers: 965
genotype quality: GenotypeQuality
num of homozygotes: 4379
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: GA
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

14-103915225-GAT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915225
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915223
    reference: chr 14
allele count: 1
allele frequency: 8.646480017984679e-6
allele num: 115654
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-30_298-29delAT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-30_283-29delAT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-30_298-29delAT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-30_189-29delAT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-30_298-29delAT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-30_298-29delAT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-30_244-29delAT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-30_262-29delAT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-30_298-29delAT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-30_106-29delAT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-30_189-29delAT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-30_298-29delAT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-30_298-29delAT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-30_182-29delAT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-30_324-29delAT
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4095
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: GAT
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

14-103915226-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915226
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915226
    reference: chr 14
allele count: 126
allele frequency: 2.102733553619705e-3
allele num: 59922
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-30A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-30A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-30A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-30A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-30A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-30A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-30A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-30A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-30A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-30A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-30A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-30A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-30A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-30A>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-30A>G
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 9.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
num of homozygotes: 4
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

14-103915226-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915226
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915226
    reference: chr 14
allele count: 80
allele frequency: 1.335068922933146e-3
allele num: 59922
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-30A>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-30A>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-30A>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-30A>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-30A>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-30A>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-30A>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-30A>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-30A>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-30A>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-30A>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-30A>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-30A>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-30A>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-30A>T
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 16
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

14-103915233-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915233
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915233
    reference: chr 14
allele count: 9
allele frequency: 7.529112568598581e-5
allele num: 119536
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-23G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-23G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-23G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-23G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-23G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-23G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-23G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-23G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-23G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-23G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-23G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-23G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-23G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-23G>T
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-23G>T
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4335
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4299
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

14-103915234-TTTTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915234
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915230
    reference: chr 14
allele count: 55
allele frequency: 4.597278411180581e-4
allele num: 119636
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-14_262-11delGTTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-14_106-11delGTTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-14_244-11delGTTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-14_189-11delGTTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-14_298-11delGTTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-14_189-11delGTTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-14_283-11delGTTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-14_298-11delGTTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-14_298-11delGTTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-14_182-11delGTTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-14_324-11delGTTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-14_298-11delGTTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-14_298-11delGTTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-14_298-11delGTTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-14_298-11delGTTT
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7607
  bin: 9.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: TTTTG
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

14-103915236-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915236
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915236
    reference: chr 14
allele count: 1
allele frequency: 8.363161944267889e-6
allele num: 119572
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-20T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-20T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-20T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-20T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-20T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-20T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-20T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-20T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-20T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-20T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-20T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-20T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-20T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-20T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-20T>G
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

14-103915238-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915238
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915239
    reference: chr 14
allele count: 1
allele frequency: 8.377594960038872e-6
allele num: 119366
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-15dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-15dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-15dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-15dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-15dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-15dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-15dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-15dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-15dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-15dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-15dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-15dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-15dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-15dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-15dupT
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS

14-103915240-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915240
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915240
    reference: chr 14
allele count: 1
allele frequency: 8.350172848577966e-6
allele num: 119758
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-16T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-16T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-16T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-16T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-16T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-16T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-16T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-16T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-16T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-16T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-16T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-16T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-16T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-16T>G
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-16T>G
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7613
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4227
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

14-103915242-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915242
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915243
    reference: chr 14
allele count: 3500
allele frequency: 4.247985241285562e-2
allele num: 82392
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-3dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-3dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-3dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-3dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-3dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-3dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-3dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-3dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-3dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-3dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-3dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-3dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-3dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-3dupT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-3dupT
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 3.25e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 6.25e1
  variant carriers: 460
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 4.75e1
  variant carriers: 379
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 6.75e1
  variant carriers: 374
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 5.25e1
  variant carriers: 451
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 8.25e1
  variant carriers: 240
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 2.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 9.25e1
  variant carriers: 178
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 4.25e1
  variant carriers: 352
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

14-103915242-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915242
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915241
    reference: chr 14
allele count: 7281
allele frequency: 8.837023011942907e-2
allele num: 82392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-3delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-3delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-3delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-3delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-3delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-3delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-3delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-3delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-3delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-3delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-3delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-3delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-3delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-3delT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-3delT
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 9.25e1
  variant carriers: 376
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 3.75e1
  variant carriers: 458
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 7.75e1
  variant carriers: 598
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 6.25e1
  variant carriers: 757
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 2.75e1
  variant carriers: 209
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 2.25e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 3.25e1
  variant carriers: 270
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 5.25e1
  variant carriers: 724
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 8.25e1
  variant carriers: 548
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: GT
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD

14-103915242-GTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103915242
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103915240
    reference: chr 14
allele count: 2
allele frequency: 2.427420137877464e-5
allele num: 82392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558698
  gene symbol: MARK3
  hgvsc: ENST00000558698.1:n.106-4_106-3delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561164
  gene symbol: MARK3
  hgvsc: ENST00000561164.1:n.182-4_182-3delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000216288
  ensembl transcript: ENST00000216288
  gene symbol: MARK3
  hgvsc: ENST00000216288.7:c.298-4_298-3delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000402104
  ensembl transcript: ENST00000440884
  gene symbol: MARK3
  hgvsc: ENST00000440884.3:c.298-4_298-3delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000454169
  ensembl transcript: ENST00000560417
  gene symbol: MARK3
  hgvsc: ENST00000560417.1:c.244-4_244-3delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000558223
  gene symbol: MARK3
  hgvsc: ENST00000558223.1:n.324-4_324-3delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000561071
  gene symbol: MARK3
  hgvsc: ENST00000561071.1:n.189-4_189-3delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000303698
  ensembl transcript: ENST00000303622
  gene symbol: MARK3
  hgvsc: ENST00000303622.9:c.298-4_298-3delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000411397
  ensembl transcript: ENST00000429436
  gene symbol: MARK3
  hgvsc: ENST00000429436.2:c.298-4_298-3delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000450772
  ensembl transcript: ENST00000553942
  gene symbol: MARK3
  hgvsc: ENST00000553942.1:c.298-4_298-3delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000559268
  gene symbol: MARK3
  hgvsc: ENST00000559268.1:n.189-4_189-3delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl transcript: ENST00000560731
  gene symbol: MARK3
  hgvsc: ENST00000560731.1:n.283-4_283-3delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000408092
  ensembl transcript: ENST00000416682
  gene symbol: MARK3
  hgvsc: ENST00000416682.2:c.298-4_298-3delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000452829
  ensembl transcript: ENST00000561225
  gene symbol: MARK3
  hgvsc: ENST00000561225.1:c.262-4_262-3delTT
  variant of: http://identifiers.org/hgnc/6897
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000075413
  ensembl protein: ENSP00000335347
  ensembl transcript: ENST00000335102
  gene symbol: MARK3
  hgvsc: ENST00000335102.5:c.298-4_298-3delTT
  variant of: http://identifiers.org/hgnc/6897
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: GTT
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS

15-57731588-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731588
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731588
    reference: chr 15
allele count: 1
allele frequency: 8.308960382876895e-6
allele num: 120352
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1391C>T
  hgvsp: ENSP00000281282.5:p.Pro464Leu
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5094
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6840
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6678
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1941
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4052
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1630
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2158
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43332
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2423
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro464Leu
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16508
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 66010
  num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

15-57731589-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731589
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731589
    reference: chr 15
allele count: 2
allele frequency: 1.66143315223712e-5
allele num: 120378
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1392G>A
  hgvsp: ENST00000281282.5:c.1392G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5092
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2424
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1632
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2157
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2090
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4064
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43336
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro464Pro
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 900
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 66032
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

15-57731591-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731591
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731591
    reference: chr 15
allele count: 1
allele frequency: 8.301786544464368e-6
allele num: 120456
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1394A>G
  hgvsp: ENSP00000281282.5:p.Asn465Ser
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6677
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5092
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1454
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn465Ser
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16510
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

15-57731593-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731593
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731593
    reference: chr 15
allele count: 62
allele frequency: 5.145569830362182e-4
allele num: 120492
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1396A>G
  hgvsp: ENSP00000281282.5:p.Ile466Val
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5947
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
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  variant carriers: 62
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile466Val
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16510
  num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/15-57731597-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731597
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731597
    reference: chr 15
allele count: 1
allele frequency: 8.292011476143882e-6
allele num: 120598
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1400A>C
  hgvsp: ENSP00000281282.5:p.Asp467Ala
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Asp467Ala
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8634
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 904
  num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

15-57731597-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731597
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731597
    reference: chr 15
allele count: 1
allele frequency: 8.292011476143882e-6
allele num: 120598
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1400A>G
  hgvsp: ENSP00000281282.5:p.Asp467Gly
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 50
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  variant carriers: 0
hgvs: p.Asp467Gly
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16510
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8634
  num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

15-57731599-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731599
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731599
    reference: chr 15
allele count: 1
allele frequency: 8.28953694646617e-6
allele num: 120634
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1402G>T
  hgvsp: ENSP00000281282.5:p.Gly468Trp
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5945
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 5092
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4443
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43369
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2188
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2431
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly468Trp
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16508
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8634
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

15-57731621-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731621
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731621
    reference: chr 15
allele count: 2
allele frequency: 1.651418568550385e-5
allele num: 121108
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1424G>A
  hgvsp: ENSP00000281282.5:p.Gly475Asp
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5098
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43392
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly475Asp
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 2
  allele frequency: 1.728309713100588e-4
  allele num: 11572
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 66506
  num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

15-57731621-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731621
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731621
    reference: chr 15
allele count: 5
allele frequency: 4.128546421375962e-5
allele num: 121108
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1424G>T
  hgvsp: ENSP00000281282.5:p.Gly475Val
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2209
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43392
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2440
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly475Val
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10356
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11572
  num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-57731622-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731622
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731622
    reference: chr 15
allele count: 2
allele frequency: 1.65144584083365e-5
allele num: 121106
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1425T>C
  hgvsp: ENST00000281282.5:c.1425T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3965
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genotype depth: GenotypeDepth
  all individuals: 5097
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4853
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly475Gly
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 3.007337904486948e-5
  allele num: 66504
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11572
  num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

15-57731623-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731623
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731623
    reference: chr 15
allele count: 1
allele frequency: 8.255184255712587e-6
allele num: 121136
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1426A>T
  hgvsp: ENSP00000281282.5:p.Ser476Cys
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 133
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genotype depth: GenotypeDepth
  all individuals: 1058
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1997
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2210
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2439
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43396
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser476Cys
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10360
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11574
  num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-57731624-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731624
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731624
    reference: chr 15
allele count: 1
allele frequency: 8.254366559910193e-6
allele num: 121148
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1427G>T
  hgvsp: ENSP00000281282.5:p.Ser476Ile
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5096
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6676
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2440
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4889
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2210
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43397
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser476Ile
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 1.156604210039325e-4
  allele num: 8646
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11574
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

15-57731625-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731625
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731625
    reference: chr 15
allele count: 2
allele frequency: 1.650818806127839e-5
allele num: 121152
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1428T>C
  hgvsp: ENST00000281282.5:c.1428T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5096
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6675
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4909
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43396
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2210
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser476Ser
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8646
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16510
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD

15-57731627-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731627
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731627
    reference: chr 15
allele count: 56
allele frequency: 4.621453447109116e-4
allele num: 121174
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1430A>G
  hgvsp: ENSP00000281282.5:p.Gln477Arg
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5100
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5947
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6668
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6264
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1495
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4883
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2209
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43406
  bin: 9.75e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln477Arg
num of homozygotes: 1
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 33
  allele frequency: 1.998788612961841e-3
  allele num: 16510
  num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP

15-57731630-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731630
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731630
    reference: chr 15
allele count: 3
allele frequency: 2.475124993812188e-5
allele num: 121206
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1433A>T
  hgvsp: ENSP00000281282.5:p.Glu478Val
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4137
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5102
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3965
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43403
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4931
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2270
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2212
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu478Val
num of homozygotes: 0
population: African
  type: Population
  allele count: 3
  allele frequency: 2.892960462873674e-4
  allele num: 10370
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11574
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

15-57731632-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731632
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731632
    reference: chr 15
allele count: 1
allele frequency: 8.249463784853985e-6
allele num: 121220
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1435A>G
  hgvsp: ENSP00000281282.5:p.Ser479Gly
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1653
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2273
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4935
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43402
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2215
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser479Gly
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 908
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16510
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD

15-57731633-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731633
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731633
    reference: chr 15
allele count: 1
allele frequency: 8.248647221855616e-6
allele num: 121232
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1436G>C
  hgvsp: ENSP00000281282.5:p.Ser479Thr
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5196
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6668
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43403
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2275
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1653
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1500
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4934
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser479Thr
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.501366243281386e-5
  allele num: 66606
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8648
  num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

15-57731637-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731637
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731637
    reference: chr 15
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1440A>G
  hgvsp: ENST00000281282.5:c.1440A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3113
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4920
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1504
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43405
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2012
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr480Thr
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10376
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16510
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

15-57731638-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731638
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731638
    reference: chr 15
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1441G>T
  hgvsp: ENSP00000281282.5:p.Val481Leu
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3965
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5955
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 8.25e1
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 4153
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1504
  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2280
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 4918
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43406
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Val481Leu
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.500600240096038e-5
  allele num: 66640
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 908
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

15-57731643-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731643
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731643
    reference: chr 15
allele count: 2
allele frequency: 1.648804616652927e-5
allele num: 121300
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1446C>T
  hgvsp: ENST00000281282.5:c.1446C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6846
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4933
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43408
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2015
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1504
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2284
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile482Ile
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16510
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 66656
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-57731648-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731648
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731648
    reference: chr 15
allele count: 2
allele frequency: 1.648641519388024e-5
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1451C>T
  hgvsp: ENSP00000281282.5:p.Ala484Val
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5103
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 5212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43414
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2025
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4937
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 2233
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2443
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala484Val
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16510
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

15-57731649-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731649
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731648
    reference: chr 15
allele count: 49
allele frequency: 4.039105132136439e-4
allele num: 121314
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1455delC
  hgvsp: ENSP00000281282.5:p.Ser486ProfsTer12
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6263
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5953
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6850
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6662
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43442
  bin: 9.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4924
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2286
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2232
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser486ProfsTer12
num of homozygotes: 1
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10392
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 908
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: GC
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ

15-57731649-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731649
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731649
    reference: chr 15
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1452G>A
  hgvsp: ENST00000281282.5:c.1452G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6850
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6662
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5206
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2286
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2232
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4924
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 43442
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala484Ala
num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 9.622786759045419e-5
  allele num: 10392
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 908
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

15-57731651-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731651
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731651
    reference: chr 15
allele count: 1
allele frequency: 8.24905548314718e-6
allele num: 121226
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1454C>T
  hgvsp: ENSP00000281282.5:p.Pro485Leu
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro485Leu
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11492
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16510
  num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

15-57731654-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731654
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731654
    reference: chr 15
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1457C>T
  hgvsp: ENSP00000281282.5:p.Ser486Phe
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6666
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6846
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2031
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2239
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4944
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43444
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser486Phe
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10390
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16510
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

15-57731656-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731656
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731656
    reference: chr 15
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: G
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1459C>G
  hgvsp: ENSP00000281282.5:p.Leu487Val
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6663
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6846
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2031
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43448
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2238
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4943
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu487Val
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11578
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 908
  num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

15-57731656-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731656
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731656
    reference: chr 15
allele count: 6
allele frequency: 4.944946264917255e-5
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1459C>T
  hgvsp: ENSP00000281282.5:p.Leu487Phe
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6663
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6846
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5959
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5111
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43448
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 2238
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 2031
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4943
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu487Phe
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 908
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16510
  num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

15-57731661-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731661
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731661
    reference: chr 15
allele count: 3
allele frequency: 2.47222863170386e-5
allele num: 121348
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1464T>A
  hgvsp: ENST00000281282.5:c.1464T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6663
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5111
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1660
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2437
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2034
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genotype quality: GenotypeQuality
  all individuals: 2292
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4939
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43450
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2241
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly488Gly
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11578
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8652
  num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum

15-57731667-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731667
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731667
    reference: chr 15
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1470G>C
  hgvsp: ENSP00000281282.5:p.Gln490His
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6663
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2292
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1661
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4923
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2244
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43449
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gln490His
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 908
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16510
  num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

15-57731669-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731669
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731669
    reference: chr 15
allele count: 3
allele frequency: 2.471984179301253e-5
allele num: 121360
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1472G>A
  hgvsp: ENSP00000281282.5:p.Ser491Asn
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5960
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6663
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5212
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43450
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2244
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4927
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser491Asn
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11578
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 908
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

15-57731673-AAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57731673
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 57731670
    reference: chr 15
allele count: 14
allele frequency: 1.153478561777016e-4
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000128849
  ensembl protein: ENSP00000281282
  ensembl transcript: ENST00000281282
  gene symbol: CGNL1
  hgvsc: ENST00000281282.5:c.1477_1479delAAG
  hgvsp: ENSP00000281282.5:p.Lys493del
  variant of: http://identifiers.org/hgnc/25931
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5211
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6662
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5960
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2294
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2248
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4956
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys493del
num of homozygotes: 0
reference allele: AAAG

GenotypeDepth
all individuals: 537
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 999
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 167
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2877
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1996
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4310
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1845
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3547
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13785
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2249
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2577
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4001
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5019
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1668
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4388
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3577
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2779
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.615091414174042e-5
allele num: 61916
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

DP
type: SiteQuality
SIO_000300: 1.419789e6

VQSLOD
type: SiteQuality
SIO_000300: -2.447e0

QD
type: SiteQuality
SIO_000300: 2.262e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.877e0

FS
type: SiteQuality
SIO_000300: 4.771e0

MQRankSum
type: SiteQuality
SIO_000300: -5.91e-1

GenotypeDepth
all individuals: 2073
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 321
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 178
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1540
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 500
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 757
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4957
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25904
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3924
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2200
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2977
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 624
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2417
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1272
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9682
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.2e0

MQ
type: SiteQuality
SIO_000300: 5.728e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.68e-2

DP
type: SiteQuality
SIO_000300: 5.47259e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 6.15e0

GenotypeDepth
all individuals: 69
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 106
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8457
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 32187
bin: 2.5e0
variant carriers: 1

GenotypeDepth
all individuals: 178
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1544
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 533
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 68
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7002
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2986
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2557
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28906
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2888
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 501
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9812
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.15e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.72546e5

QD
type: SiteQuality
SIO_000300: 2.71e1

VQSLOD
type: SiteQuality
SIO_000300: -1.171e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 38
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 534
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 323
bin: 4.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 106
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variant carriers: 0

GenotypeDepth
all individuals: 45
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variant carriers: 0

GenotypeDepth
all individuals: 937
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 68
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variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7571
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1456
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2435
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2915
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2987
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 2.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2252
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.258e0

QD
type: SiteQuality
SIO_000300: 1.643e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 5.77623e5

GenotypeDepth
all individuals: 70
bin: 6.75e1
variant carriers: 2

GenotypeDepth
all individuals: 69
bin: 7.75e1
variant carriers: 3

GenotypeDepth
all individuals: 31583
bin: 2.5e0
variant carriers: 33

GenotypeDepth
all individuals: 47
bin: 8.75e1
variant carriers: 3

GenotypeDepth
all individuals: 70
bin: 7.25e1
variant carriers: 4

GenotypeDepth
all individuals: 40
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variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 3

GenotypeDepth
all individuals: 183
bin: 5.25e1
variant carriers: 7

GenotypeDepth
all individuals: 110
bin: 6.25e1
variant carriers: 4

GenotypeDepth
all individuals: 122
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 345
bin: 8.75e1
variant carriers: 9

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3102
bin: 9.75e1
variant carriers: 158

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 8

GenotypeQuality
all individuals: 509
bin: 9.25e1
variant carriers: 9

GenotypeQuality
all individuals: 212
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2216
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 718
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 915
bin: 1.75e1
variant carriers: 16

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 8

GenotypeQuality
all individuals: 329
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 28816
bin: 7.5e0
variant carriers: 14

GenotypeQuality
all individuals: 1321
bin: 1.25e1
variant carriers: 6

GenotypeQuality
all individuals: 362
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 86
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 638
bin: 8.25e1
variant carriers: 7

GenotypeQuality
all individuals: 3058
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 8465
bin: 2.25e1
variant carriers: 19

GenotypeQuality
all individuals: 913
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 492
bin: 7.25e1
variant carriers: 2

African
type: Population
allele count: 134
allele frequency: 5.76592082616179e-2
allele num: 2324
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.013581998783702e-4
allele num: 9866
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.431906614785992e-4
allele num: 8224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 7.633587786259542e-3
allele num: 524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.385964912280702e-3
allele num: 228
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.62e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.43e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.86e0

DP
type: SiteQuality
SIO_000300: 5.85654e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 534
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20945
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2440
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 137
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variant carriers: 0

GenotypeDepth
all individuals: 1574
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 748
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variant carriers: 0

GenotypeDepth
all individuals: 67
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variant carriers: 0

GenotypeDepth
all individuals: 123
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variant carriers: 0

GenotypeDepth
all individuals: 70
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variant carriers: 0

GenotypeDepth
all individuals: 37
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variant carriers: 0

GenotypeDepth
all individuals: 941
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 180
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variant carriers: 0

GenotypeQuality
all individuals: 2985
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4620
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variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
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variant carriers: 0

GenotypeQuality
all individuals: 490
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variant carriers: 0

GenotypeQuality
all individuals: 636
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variant carriers: 0

GenotypeQuality
all individuals: 278
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variant carriers: 0

GenotypeQuality
all individuals: 66
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variant carriers: 0

GenotypeQuality
all individuals: 20271
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variant carriers: 0

GenotypeQuality
all individuals: 506
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variant carriers: 0

GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
all individuals: 1427
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variant carriers: 0

GenotypeQuality
all individuals: 22666
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variant carriers: 0

GenotypeQuality
all individuals: 727
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variant carriers: 0

GenotypeQuality
all individuals: 631
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GenotypeQuality
all individuals: 98
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variant carriers: 0

GenotypeQuality
all individuals: 493
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variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.194457716196847e-4
allele num: 8372
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.332e1

FS
type: SiteQuality
SIO_000300: 7.113e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.554999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.74e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.43e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

DP
type: SiteQuality
SIO_000300: 6.93816e5

GenotypeDepth
all individuals: 749
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 4314
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1576
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2451
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 143
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variant carriers: 0

GenotypeDepth
all individuals: 1007
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variant carriers: 0

GenotypeDepth
all individuals: 534
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variant carriers: 0

GenotypeDepth
all individuals: 37
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variant carriers: 0

GenotypeDepth
all individuals: 41
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variant carriers: 0

GenotypeDepth
all individuals: 47
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variant carriers: 0

GenotypeDepth
all individuals: 67
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GenotypeDepth
all individuals: 942
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GenotypeQuality
all individuals: 23634
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GenotypeQuality
all individuals: 1281
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variant carriers: 0

GenotypeQuality
all individuals: 725
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GenotypeQuality
all individuals: 341
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GenotypeQuality
all individuals: 581
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GenotypeQuality
all individuals: 274
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variant carriers: 0

GenotypeQuality
all individuals: 19539
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variant carriers: 0

GenotypeQuality
all individuals: 506
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variant carriers: 0

GenotypeQuality
all individuals: 70
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variant carriers: 0

GenotypeQuality
all individuals: 636
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variant carriers: 0

GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
all individuals: 245
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GenotypeQuality
all individuals: 2986
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variant carriers: 1

GenotypeQuality
all individuals: 4842
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variant carriers: 0

GenotypeQuality
all individuals: 976
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GenotypeQuality
all individuals: 492
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variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 452
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variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.192748091603053e-4
allele num: 8384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 918
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11738
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.26e-1

FS
type: SiteQuality
SIO_000300: 8.954000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.59e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.36e-1

DP
type: SiteQuality
SIO_000300: 7.02253e5

BaseQRankSum
type: SiteQuality
SIO_000300: 6.28e0

VQSLOD
type: SiteQuality
SIO_000300: -5.456e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.294e1

GenotypeDepth
all individuals: 26654
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 749
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17757
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1501
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variant carriers: 1

GenotypeDepth
all individuals: 4724
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variant carriers: 0

GenotypeDepth
all individuals: 172
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variant carriers: 0

GenotypeDepth
all individuals: 324
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variant carriers: 0

GenotypeDepth
all individuals: 111
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variant carriers: 0

GenotypeDepth
all individuals: 70
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variant carriers: 0

GenotypeDepth
all individuals: 67
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GenotypeDepth
all individuals: 941
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GenotypeDepth
all individuals: 70
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GenotypeQuality
all individuals: 1352
bin: 1.75e1
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GenotypeQuality
all individuals: 726
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GenotypeQuality
all individuals: 40
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GenotypeQuality
all individuals: 557
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variant carriers: 0

GenotypeQuality
all individuals: 474
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GenotypeQuality
all individuals: 985
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variant carriers: 0

GenotypeQuality
all individuals: 637
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variant carriers: 0

GenotypeQuality
all individuals: 491
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GenotypeQuality
all individuals: 216
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GenotypeQuality
all individuals: 82
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GenotypeQuality
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GenotypeQuality
all individuals: 17379
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GenotypeQuality
all individuals: 506
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variant carriers: 0

GenotypeQuality
all individuals: 71
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GenotypeQuality
all individuals: 5318
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variant carriers: 0

GenotypeQuality
all individuals: 25638
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
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GenotypeQuality
all individuals: 2988
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 340
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.399048266485384e-4
allele num: 2942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1184
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.23e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

FS
type: SiteQuality
SIO_000300: 7.353e0

QD
type: SiteQuality
SIO_000300: 8.6e0

VQSLOD
type: SiteQuality
SIO_000300: -5.439000000000001e-1

DP
type: SiteQuality
SIO_000300: 7.27855e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.85e-1

GenotypeDepth
all individuals: 23549
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 67
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variant carriers: 0

GenotypeDepth
all individuals: 536
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GenotypeDepth
all individuals: 41
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GenotypeDepth
all individuals: 70
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variant carriers: 0

GenotypeQuality
all individuals: 49
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GenotypeQuality
all individuals: 1250
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GenotypeQuality
all individuals: 410
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GenotypeQuality
all individuals: 485
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variant carriers: 0

GenotypeQuality
all individuals: 68
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GenotypeQuality
all individuals: 1468
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GenotypeQuality
all individuals: 203
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GenotypeQuality
all individuals: 939
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GenotypeQuality
all individuals: 18087
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variant carriers: 0

GenotypeQuality
all individuals: 3827
bin: 6.25e1
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GenotypeQuality
all individuals: 432
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1550
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22973
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2988
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 339
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1152
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.971938775510203e-5
allele num: 12544
num of homozygotes: 0

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African
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South Asian
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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MQ
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QD
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Finnish)
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Other
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European (Non-Finnish)
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East Asian
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MQ
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQRankSum
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QD
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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ClippingRankSum
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FS
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QD
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InbreedingCoeff
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MQRankSum
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MQ
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VQSLOD
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DP
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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African
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East Asian
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South Asian
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European (Finnish)
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ClippingRankSum
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ReadPosRankSum
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FS
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DP
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QD
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MQRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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South Asian
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Latino
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BaseQRankSum
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FS
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DP
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MQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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QD
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South Asian
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Latino
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European (Non-Finnish)
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VQSLOD
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InbreedingCoeff
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MQ
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DP
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East Asian
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FS
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MQ
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DP
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VQSLOD
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GenotypeQuality
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African
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European (Non-Finnish)
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Latino
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South Asian
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DP
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MQRankSum
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FS
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VQSLOD
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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African
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Other
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European (Non-Finnish)
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East Asian
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ClippingRankSum
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InbreedingCoeff
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FS
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MQ
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VQSLOD
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DP
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QD
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Other
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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MQ
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MQRankSum
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BaseQRankSum
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FS
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DP
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QD
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InbreedingCoeff
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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East Asian
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Latino
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African
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European (Non-Finnish)
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DP
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VQSLOD
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QD
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InbreedingCoeff
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FS
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MQ
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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European (Non-Finnish)
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Latino
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South Asian
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East Asian
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Other
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European (Finnish)
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ReadPosRankSum
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FS
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InbreedingCoeff
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VQSLOD
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MQRankSum
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BaseQRankSum
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DP
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MQ
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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African
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European (Finnish)
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Latino
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South Asian
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ReadPosRankSum
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FS
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VQSLOD
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InbreedingCoeff
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MQRankSum
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MQ
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QD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 931
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8086
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.30119722747322e-5
allele num: 15870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9212
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.100000000000001e-1

DP
type: SiteQuality
SIO_000300: 3.602319e6

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.701e1

MQRankSum
type: SiteQuality
SIO_000300: -1.721e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.477e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.87e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.379e0

GenotypeDepth
all individuals: 209
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variant carriers: 83

GenotypeDepth
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variant carriers: 765

GenotypeDepth
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GenotypeDepth
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variant carriers: 2165

GenotypeDepth
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variant carriers: 1568

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 979

GenotypeQuality
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variant carriers: 24163

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 159

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 261

GenotypeQuality
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GenotypeQuality
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variant carriers: 167

GenotypeQuality
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variant carriers: 236

GenotypeQuality
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GenotypeQuality
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variant carriers: 326

GenotypeQuality
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GenotypeQuality
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variant carriers: 318

GenotypeQuality
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variant carriers: 163

GenotypeQuality
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variant carriers: 268

GenotypeQuality
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variant carriers: 147

GenotypeQuality
all individuals: 945
bin: 8.25e1
variant carriers: 313

GenotypeQuality
all individuals: 309
bin: 4.25e1
variant carriers: 175

European (Non-Finnish)
type: Population
allele count: 19509
allele frequency: 3.135789372167037e-1
allele num: 62214
num of homozygotes: 2921

European (Finnish)
type: Population
allele count: 2332
allele frequency: 3.647169221144823e-1
allele num: 6394
num of homozygotes: 364

Latino
type: Population
allele count: 4006
allele frequency: 3.649781341107872e-1
allele num: 10976
num of homozygotes: 639

South Asian
type: Population
allele count: 2289
allele frequency: 1.44234404536862e-1
allele num: 15870
num of homozygotes: 202

African
type: Population
allele count: 867
allele frequency: 9.411636995223621e-2
allele num: 9212
num of homozygotes: 34

East Asian
type: Population
allele count: 2530
allele frequency: 3.128864704427405e-1
allele num: 8086
num of homozygotes: 373

Other
type: Population
allele count: 252
allele frequency: 2.950819672131147e-1
allele num: 854
num of homozygotes: 33

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.701e1

VQSLOD
type: SiteQuality
SIO_000300: 8.100000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.87e-2

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.477e0

DP
type: SiteQuality
SIO_000300: 3.602319e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.379e0

MQRankSum
type: SiteQuality
SIO_000300: -1.721e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 638
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28726
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.62663906142167e-5
allele num: 11592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.468e0

DP
type: SiteQuality
SIO_000300: 2.054946e6

QD
type: SiteQuality
SIO_000300: 1.151e1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.59e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.666e0

MQ
type: SiteQuality
SIO_000300: 5.506e1

GenotypeDepth
all individuals: 1300
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1662
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
all individuals: 1931
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GenotypeDepth
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GenotypeQuality
all individuals: 784
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1324
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 148
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variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.24254215304799e-5
allele num: 30840
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.260366760284156e-5
allele num: 12106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3948
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4450
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.69e-1

QD
type: SiteQuality
SIO_000300: 9.77e0

DP
type: SiteQuality
SIO_000300: 2.066267e6

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

FS
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.33e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

GenotypeDepth
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bin: 6.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15982
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.529519730804527e-4
allele num: 58842
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

DP
type: SiteQuality
SIO_000300: 3.690382e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.2e-2

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.104e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.335e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.25e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.056859015007398e-4
allele num: 9462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8228
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.67e-1

FS
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: 4.64e-2

MQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.734e1

DP
type: SiteQuality
SIO_000300: 3.831225e6

GenotypeDepth
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variant carriers: 1541

GenotypeDepth
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variant carriers: 366

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 915

GenotypeDepth
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variant carriers: 1804

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 23076

GenotypeQuality
all individuals: 1813
bin: 6.25e1
variant carriers: 324

GenotypeQuality
all individuals: 1087
bin: 7.75e1
variant carriers: 333

GenotypeQuality
all individuals: 1125
bin: 2.5e0
variant carriers: 131

GenotypeQuality
all individuals: 422
bin: 3.25e1
variant carriers: 187

GenotypeQuality
all individuals: 324
bin: 5.25e1
variant carriers: 236

GenotypeQuality
all individuals: 1042
bin: 8.25e1
variant carriers: 321

GenotypeQuality
all individuals: 299
bin: 1.75e1
variant carriers: 185

GenotypeQuality
all individuals: 1147
bin: 6.75e1
variant carriers: 295

GenotypeQuality
all individuals: 214
bin: 1.25e1
variant carriers: 141

GenotypeQuality
all individuals: 385
bin: 5.75e1
variant carriers: 317

Other
type: Population
allele count: 243
allele frequency: 2.793103448275862e-1
allele num: 870
num of homozygotes: 31

African
type: Population
allele count: 856
allele frequency: 9.046713168463327e-2
allele num: 9462
num of homozygotes: 32

South Asian
type: Population
allele count: 2277
allele frequency: 1.396247240618101e-1
allele num: 16308
num of homozygotes: 210

European (Finnish)
type: Population
allele count: 2290
allele frequency: 3.573657927590512e-1
allele num: 6408
num of homozygotes: 339

Latino
type: Population
allele count: 3928
allele frequency: 3.550894955704212e-1
allele num: 11062
num of homozygotes: 597

European (Non-Finnish)
type: Population
allele count: 19229
allele frequency: 3.036989070693032e-1
allele num: 63316
num of homozygotes: 2805

East Asian
type: Population
allele count: 2518
allele frequency: 3.060281964025279e-1
allele num: 8228
num of homozygotes: 365

MQRankSum
type: SiteQuality
SIO_000300: -1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.747e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.24e-1

MQ
type: SiteQuality
SIO_000300: 5.734e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.64e-2

FS
type: SiteQuality
SIO_000300: 3.947e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.67e-1

QD
type: SiteQuality
SIO_000300: 1.047e1

DP
type: SiteQuality
SIO_000300: 3.831225e6

VQSLOD
type: SiteQuality
SIO_000300: 6.12e-1

GenotypeDepth
all individuals: 826
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2145
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2578
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3269
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7759
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3239
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3709
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3801
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1042
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 856
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47079
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 383
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1813
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.13195977434388e-5
allele num: 16308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.734e1

VQSLOD
type: SiteQuality
SIO_000300: 6.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.747e0

DP
type: SiteQuality
SIO_000300: 3.831225e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.24e-1

FS
type: SiteQuality
SIO_000300: 3.947e0

MQRankSum
type: SiteQuality
SIO_000300: -1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.64e-2

QD
type: SiteQuality
SIO_000300: 1.047e1

GenotypeDepth
all individuals: 1325
bin: 8.75e1
variant carriers: 3

GenotypeDepth
all individuals: 472
bin: 1.75e1
variant carriers: 3

GenotypeDepth
all individuals: 439
bin: 1.25e1
variant carriers: 3

GenotypeDepth
all individuals: 2264
bin: 6.75e1
variant carriers: 7

GenotypeDepth
all individuals: 2278
bin: 6.25e1
variant carriers: 6

GenotypeDepth
all individuals: 2001
bin: 5.25e1
variant carriers: 3

GenotypeDepth
all individuals: 1887
bin: 7.75e1
variant carriers: 10

GenotypeDepth
all individuals: 1926
bin: 3.25e1
variant carriers: 12

GenotypeQuality
all individuals: 1206
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 24180
bin: 9.75e1
variant carriers: 100

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 741
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 79
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 733
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2896
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 114
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 128
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 98
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 228
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 695
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 537
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 2

South Asian
type: Population
allele count: 1
allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 7.907221929362151e-4
allele num: 3794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 112
allele frequency: 3.797382518478335e-3
allele num: 29494
num of homozygotes: 3

Latino
type: Population
allele count: 3
allele frequency: 6.759801712483101e-4
allele num: 4438
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2558
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 6.500260010400416e-4
allele num: 7692
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 4.629629629629629e-3
allele num: 432
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.43e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.28e-2

MQ
type: SiteQuality
SIO_000300: 5.262e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

DP
type: SiteQuality
SIO_000300: 2.153375e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

GenotypeDepth
all individuals: 2001
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1630
bin: 8.25e1
variant carriers: 5

GenotypeDepth
all individuals: 2022
bin: 4.75e1
variant carriers: 4

GenotypeDepth
all individuals: 271
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1858
bin: 3.75e1
variant carriers: 5

GenotypeDepth
all individuals: 1887
bin: 7.75e1
variant carriers: 2

GenotypeDepth
all individuals: 4626
bin: 9.75e1
variant carriers: 19

GenotypeDepth
all individuals: 1068
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 733
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2896
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 506
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 128
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 537
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 79
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 228
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 695
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 741
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24180
bin: 9.75e1
variant carriers: 43

GenotypeQuality
all individuals: 114
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 7.75e1
variant carriers: 2

East Asian
type: Population
allele count: 3
allele frequency: 7.907221929362151e-4
allele num: 3794
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 49
allele frequency: 1.661354851834271e-3
allele num: 29494
num of homozygotes: 8

South Asian
type: Population
allele count: 6
allele frequency: 5.211047420531526e-4
allele num: 11514
num of homozygotes: 3

African
type: Population
allele count: 1
allele frequency: 1.300052002080083e-4
allele num: 7692
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 2.478593961243804e-3
allele num: 4438
num of homozygotes: 3

Other
type: Population
allele count: 3
allele frequency: 6.944444444444444e-3
allele num: 432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 2.736512900703675e-3
allele num: 2558
num of homozygotes: 1

DP
type: SiteQuality
SIO_000300: 2.153375e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.43e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.262e1

QD
type: SiteQuality
SIO_000300: 4.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.28e-2

GenotypeDepth
all individuals: 2168
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3211
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 735
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 7595
bin: 9.75e1
variant carriers: 5

GenotypeDepth
all individuals: 3869
bin: 4.75e1
variant carriers: 2

GenotypeDepth
all individuals: 3416
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3733
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2602
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2289
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1521
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1602
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variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1792
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variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
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variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44179
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1204
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3393
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 7
allele frequency: 7.255389718076285e-4
allele num: 9648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65886
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73550850399167e-4
allele num: 11524
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.826943e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.517e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

MQRankSum
type: SiteQuality
SIO_000300: 5.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.43e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.93e-1

QD
type: SiteQuality
SIO_000300: 1.39e1

GenotypeDepth
all individuals: 2527
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 3259
bin: 7.75e1
variant carriers: 7

GenotypeDepth
all individuals: 4294
bin: 5.75e1
variant carriers: 3

GenotypeDepth
all individuals: 92
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 640
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2167
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2605
bin: 8.25e1
variant carriers: 5

GenotypeDepth
all individuals: 3731
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 130
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1909
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1611
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3578
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44206
bin: 9.75e1
variant carriers: 54

GenotypeQuality
all individuals: 107
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 46
allele frequency: 4.759933774834437e-3
allele num: 9664
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.467406380027739e-4
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.174536058256989e-4
allele num: 8514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.033060357901122e-5
allele num: 65940
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213739531496541e-4
allele num: 16478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.802e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.152e0

DP
type: SiteQuality
SIO_000300: 3.831275e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.02e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.22e0

QD
type: SiteQuality
SIO_000300: 6.05e0

GenotypeDepth
all individuals: 4294
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 422
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3866
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4330
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3252
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variant carriers: 0

GenotypeDepth
all individuals: 1716
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 7587
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variant carriers: 0

GenotypeDepth
all individuals: 3752
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1923
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1610
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1578
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1832
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516208266367468e-5
allele num: 65954
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

DP
type: SiteQuality
SIO_000300: 3.829434e6

FS
type: SiteQuality
SIO_000300: 3.576e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.69e-1

MQ
type: SiteQuality
SIO_000300: 5.815e1

MQRankSum
type: SiteQuality
SIO_000300: 4.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.621e0

BaseQRankSum
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SIO_000300: 6.77e0

QD
type: SiteQuality
SIO_000300: 1.636e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519618271890101e-5
allele num: 65806
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.83514e6

VQSLOD
type: SiteQuality
SIO_000300: 9.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.95e-1

MQ
type: SiteQuality
SIO_000300: 5.651e1

QD
type: SiteQuality
SIO_000300: 6.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

FS
type: SiteQuality
SIO_000300: 9.069000000000001e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3935
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.034340091021928e-4
allele num: 9668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66016
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.52e-1

FS
type: SiteQuality
SIO_000300: 2.308e1

MQ
type: SiteQuality
SIO_000300: 5.848e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.582e0

MQRankSum
type: SiteQuality
SIO_000300: -1.326e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

QD
type: SiteQuality
SIO_000300: 3.57e0

DP
type: SiteQuality
SIO_000300: 3.84454e6

VQSLOD
type: SiteQuality
SIO_000300: -5.206e0

GenotypeDepth
all individuals: 3783
bin: 5.75e1
variant carriers: 437

GenotypeDepth
all individuals: 1928
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variant carriers: 235

GenotypeDepth
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GenotypeDepth
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variant carriers: 312

GenotypeDepth
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variant carriers: 723

GenotypeDepth
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variant carriers: 203

GenotypeDepth
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variant carriers: 94

GenotypeDepth
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variant carriers: 377

GenotypeQuality
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variant carriers: 212

GenotypeQuality
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variant carriers: 263

GenotypeQuality
all individuals: 10889
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variant carriers: 405

GenotypeQuality
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GenotypeQuality
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variant carriers: 106

GenotypeQuality
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variant carriers: 76

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 439

GenotypeQuality
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variant carriers: 337

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9979
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variant carriers: 809

GenotypeQuality
all individuals: 1833
bin: 7.25e1
variant carriers: 126

European (Finnish)
type: Population
allele count: 94
allele frequency: 2.044367116137451e-2
allele num: 4598
num of homozygotes: 0

Latino
type: Population
allele count: 344
allele frequency: 4.200244200244201e-2
allele num: 8190
num of homozygotes: 0

African
type: Population
allele count: 241
allele frequency: 3.737593052109181e-2
allele num: 6448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1485
allele frequency: 3.274098244995149e-2
allele num: 45356
num of homozygotes: 0

Other
type: Population
allele count: 23
allele frequency: 3.582554517133956e-2
allele num: 642
num of homozygotes: 0

South Asian
type: Population
allele count: 1130
allele frequency: 9.968242766407905e-2
allele num: 11336
num of homozygotes: 0

East Asian
type: Population
allele count: 183
allele frequency: 3.143249742356578e-2
allele num: 5822
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.894e1

QD
type: SiteQuality
SIO_000300: 8.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.28e0

FS
type: SiteQuality
SIO_000300: 8.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

DP
type: SiteQuality
SIO_000300: 5.032481e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.29e-1

GenotypeDepth
all individuals: 2945
bin: 4.75e1
variant carriers: 708

GenotypeDepth
all individuals: 17638
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variant carriers: 1775

GenotypeDepth
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GenotypeDepth
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variant carriers: 779

GenotypeDepth
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variant carriers: 802

GenotypeDepth
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variant carriers: 692

GenotypeDepth
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variant carriers: 434

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 646

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 588

Latino
type: Population
allele count: 608
allele frequency: 7.423687423687424e-2
allele num: 8190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 98
allele frequency: 2.131361461505002e-2
allele num: 4598
num of homozygotes: 0

South Asian
type: Population
allele count: 1617
allele frequency: 1.426429075511644e-1
allele num: 11336
num of homozygotes: 0

Other
type: Population
allele count: 63
allele frequency: 9.813084112149532e-2
allele num: 642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4011
allele frequency: 8.843372431431343e-2
allele num: 45356
num of homozygotes: 0

African
type: Population
allele count: 460
allele frequency: 7.133995037220843e-2
allele num: 6448
num of homozygotes: 0

East Asian
type: Population
allele count: 424
allele frequency: 7.282720714531089e-2
allele num: 5822
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.29e-1

MQ
type: SiteQuality
SIO_000300: 5.894e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

FS
type: SiteQuality
SIO_000300: 8.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.28e0

DP
type: SiteQuality
SIO_000300: 5.032481e6

QD
type: SiteQuality
SIO_000300: 8.4e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2284
bin: 6.25e1
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.409559925919393e-5
allele num: 45356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4598
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MQ
type: SiteQuality
SIO_000300: 5.894e1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.2e-2

QD
type: SiteQuality
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VQSLOD
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SIO_000300: 2.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

DP
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.29e-1

MQRankSum
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FS
type: SiteQuality
SIO_000300: 8.7e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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African
type: Population
allele count: 0
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Latino
type: Population
allele count: 0
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East Asian
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
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BaseQRankSum
type: SiteQuality
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QD
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InbreedingCoeff
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MQRankSum
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DP
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VQSLOD
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ClippingRankSum
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FS
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.56e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
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African
type: Population
allele count: 1
allele frequency: 9.869719699960521e-5
allele num: 10132
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South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

MQ
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SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

QD
type: SiteQuality
SIO_000300: 1.433e1

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.34e-1

FS
type: SiteQuality
SIO_000300: 7.615e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.98e-1

DP
type: SiteQuality
SIO_000300: 3.173494e6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66076
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.844457570387872e-5
allele num: 10158
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.003e0

MQ
type: SiteQuality
SIO_000300: 5.888e1

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.62e-1

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.14e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.399999999999999e-1

DP
type: SiteQuality
SIO_000300: 3.174753e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

African
type: Population
allele count: 57
allele frequency: 5.606925044265198e-3
allele num: 10166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.051437216338881e-5
allele num: 66100
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.08e0

VQSLOD
type: SiteQuality
SIO_000300: 5.39e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.176654e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e-1

QD
type: SiteQuality
SIO_000300: 1.335e1

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

VQSLOD
type: SiteQuality
SIO_000300: 1.45e-1

FS
type: SiteQuality
SIO_000300: 7.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

DP
type: SiteQuality
SIO_000300: 3.178911e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 1.359e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511350240304688e-5
allele num: 66166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.21e-1

QD
type: SiteQuality
SIO_000300: 1.359e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.67e0

DP
type: SiteQuality
SIO_000300: 3.178911e6

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

VQSLOD
type: SiteQuality
SIO_000300: 1.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510847887834653e-5
allele num: 66188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.035e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.262e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.267e-1

QD
type: SiteQuality
SIO_000300: 5.01e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.82e-1

DP
type: SiteQuality
SIO_000300: 3.180076e6

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.136e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 3.703e0

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.71e-1

QD
type: SiteQuality
SIO_000300: 1.224e1

DP
type: SiteQuality
SIO_000300: 3.188966e6

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.014494932788019e-5
allele num: 66506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 3.703e0

VQSLOD
type: SiteQuality
SIO_000300: 8.71e-1

QD
type: SiteQuality
SIO_000300: 1.224e1

DP
type: SiteQuality
SIO_000300: 3.188966e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.136e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.75e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.437e-1

FS
type: SiteQuality
SIO_000300: 1.0002e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

DP
type: SiteQuality
SIO_000300: 3.189255e6

QD
type: SiteQuality
SIO_000300: 1.346e1

MQRankSum
type: SiteQuality
SIO_000300: 6.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503171692270691e-5
allele num: 66526
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.91e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 7.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.889999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.356e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.66e-1

DP
type: SiteQuality
SIO_000300: 3.189643e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.748e0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

QD
type: SiteQuality
SIO_000300: 1.014e1

DP
type: SiteQuality
SIO_000300: 3.18987e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.008e0

VQSLOD
type: SiteQuality
SIO_000300: -2.27e-1

FS
type: SiteQuality
SIO_000300: 8.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.24e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.451e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.005801196308876e-5
allele num: 66538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.974e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.22e-1

QD
type: SiteQuality
SIO_000300: 1.193e1

DP
type: SiteQuality
SIO_000300: 3.190109e6

FS
type: SiteQuality
SIO_000300: 3.411e0

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 3.155427335016228e-4
allele num: 66552
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.928640308582449e-4
allele num: 10370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.66e-2

MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.805e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

FS
type: SiteQuality
SIO_000300: 5.51e-1

QD
type: SiteQuality
SIO_000300: 1.219e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e-1

DP
type: SiteQuality
SIO_000300: 3.191771e6

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.223e0

QD
type: SiteQuality
SIO_000300: 1.188e1

FS
type: SiteQuality
SIO_000300: 1.138e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.95e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.52e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.26e-1

DP
type: SiteQuality
SIO_000300: 3.191827e6

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501636784094663e-5
allele num: 66594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

VQSLOD
type: SiteQuality
SIO_000300: -3.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-1

DP
type: SiteQuality
SIO_000300: 3.192182e6

FS
type: SiteQuality
SIO_000300: 4.89e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

QD
type: SiteQuality
SIO_000300: 1.244e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.383e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

FS
type: SiteQuality
SIO_000300: 3.758e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e-1

QD
type: SiteQuality
SIO_000300: 1.224e1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.192259e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.17e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.742e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

DP
type: SiteQuality
SIO_000300: 3.192865e6

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.777e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.419e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

FS
type: SiteQuality
SIO_000300: 9.6e-1

QD
type: SiteQuality
SIO_000300: 1.295e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.99e-1

DP
type: SiteQuality
SIO_000300: 3.192971e6

VQSLOD
type: SiteQuality
SIO_000300: -5.597e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.925298421255295e-4
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.067e0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.322e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e-1

QD
type: SiteQuality
SIO_000300: 1.244e1

VQSLOD
type: SiteQuality
SIO_000300: 2.42e0

DP
type: SiteQuality
SIO_000300: 3.193749e6

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500105007350515e-5
allele num: 66662
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.84e-1

FS
type: SiteQuality
SIO_000300: 4.546e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

VQSLOD
type: SiteQuality
SIO_000300: -1.478e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.96e0

DP
type: SiteQuality
SIO_000300: 3.194532e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

Latino
type: Population
allele count: 44
allele frequency: 3.800967519004838e-3
allele num: 11576
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.50030001200048e-5
allele num: 66664
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.231e1

MQRankSum
type: SiteQuality
SIO_000300: 5.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.48e-2

FS
type: SiteQuality
SIO_000300: 5.3e-1

DP
type: SiteQuality
SIO_000300: 3.196228e6

MQ
type: SiteQuality
SIO_000300: 6.012e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.0e-3

FS
type: SiteQuality
SIO_000300: 5.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

DP
type: SiteQuality
SIO_000300: 3.196228e6

MQ
type: SiteQuality
SIO_000300: 6.012e1

MQRankSum
type: SiteQuality
SIO_000300: 5.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.48e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

QD
type: SiteQuality
SIO_000300: 1.231e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.79e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.716e0

FS
type: SiteQuality
SIO_000300: 1.707e0

DP
type: SiteQuality
SIO_000300: 3.196429e6

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.295e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.56e-1

QD
type: SiteQuality
SIO_000300: 1.322e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.973e0

QD
type: SiteQuality
SIO_000300: 1.005e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-2

DP
type: SiteQuality
SIO_000300: 3.196014e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.618e0

VQSLOD
type: SiteQuality
SIO_000300: 4.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.46e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.262e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.03e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.664e0

MQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

DP
type: SiteQuality
SIO_000300: 3.196369e6

African
type: Population
allele count: 6
allele frequency: 5.773672055427252e-4
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.66e0

QD
type: SiteQuality
SIO_000300: 1.262e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.03e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.7e-2

DP
type: SiteQuality
SIO_000300: 3.196369e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.664e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.498155756139982e-5
allele num: 66694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 3.196686e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.943e1

QD
type: SiteQuality
SIO_000300: 1.227e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.44e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.88e-1

QD
type: SiteQuality
SIO_000300: 7.95e0

DP
type: SiteQuality
SIO_000300: 3.196927e6

FS
type: SiteQuality
SIO_000300: 1.705e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.569999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.886280546469117e-4
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.35e-1

QD
type: SiteQuality
SIO_000300: 1.134e1

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.558e0

FS
type: SiteQuality
SIO_000300: 1.0018e1

DP
type: SiteQuality
SIO_000300: 3.197054e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0