16-29899055-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899055
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899055
    reference: chr 16
allele count: 94
allele frequency: 8.022257497397033e-4
allele num: 117174
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.991A>C
  hgvsp: ENSP00000439412.1:p.Thr331Pro
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.913A>C
  hgvsp: ENSP00000310206.3:p.Thr305Pro
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.138A>C
  hgvsp: ENSP00000454654.1:p.Thr47Pro
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.781A>C
  hgvsp: ENSP00000319215.6:p.Thr261Pro
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1123A>C
  hgvsp: ENSP00000312550.5:p.Thr375Pro
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11247
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26339
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 12859
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2589
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 35202
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1803
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 2.5e0
  variant carriers: 1
hgvs: p.Thr375Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

16-29899057-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899057
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899057
    reference: chr 16
allele count: 11
allele frequency: 9.192405401791683e-5
allele num: 119664
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1121T>C
  hgvsp: ENSP00000312550.5:p.Leu374Pro
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.989T>C
  hgvsp: ENSP00000439412.1:p.Leu330Pro
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.911T>C
  hgvsp: ENSP00000310206.3:p.Leu304Pro
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.779T>C
  hgvsp: ENSP00000319215.6:p.Leu260Pro
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.136T>C
  hgvsp: ENSP00000454654.1:p.Leu46Pro
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26922
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13101
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11328
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36685
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2708
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8957
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3224
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu374Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

16-29899058-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899058
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899058
    reference: chr 16
allele count: 1
allele frequency: 8.348081610845828e-6
allele num: 119788
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.988C>G
  hgvsp: ENSP00000439412.1:p.Leu330Val
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1120C>G
  hgvsp: ENSP00000312550.5:p.Leu374Val
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.778C>G
  hgvsp: ENSP00000319215.6:p.Leu260Val
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.135C>G
  hgvsp: ENSP00000454654.1:p.Leu46Val
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.910C>G
  hgvsp: ENSP00000310206.3:p.Leu304Val
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26924
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3097
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36775
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8986
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu374Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-29899059-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899059
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899059
    reference: chr 16
allele count: 1
allele frequency: 8.347802858287698e-6
allele num: 119792
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1119C>A
  hgvsp: ENSP00000312550.5:p.Asn373Lys
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.909C>A
  hgvsp: ENSP00000310206.3:p.Asn303Lys
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.134C>A
  hgvsp: ENSP00000454654.1:p.Asn45Lys
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.987C>A
  hgvsp: ENSP00000439412.1:p.Asn329Lys
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.777C>A
  hgvsp: ENSP00000319215.6:p.Asn259Lys
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3095
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2714
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3223
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn373Lys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

16-29899070-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899070
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899070
    reference: chr 16
allele count: 3
allele frequency: 2.504131817498873e-5
allele num: 119802
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.123G>A
  hgvsp: ENSP00000454654.1:p.Val42Ile
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.766G>A
  hgvsp: ENSP00000319215.6:p.Val256Ile
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.898G>A
  hgvsp: ENSP00000310206.3:p.Val300Ile
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1108G>A
  hgvsp: ENSP00000312550.5:p.Val370Ile
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.976G>A
  hgvsp: ENSP00000439412.1:p.Val326Ile
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26986
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36544
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3083
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8830
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2685
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val370Ile
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum

16-29899077-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899077
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899077
    reference: chr 16
allele count: 1
allele frequency: 8.337919188887221e-6
allele num: 119934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.759G>A
  hgvsp: ENST00000346932.5:c.759G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1101G>A
  hgvsp: ENST00000308713.5:c.1101G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.891G>A
  hgvsp: ENST00000350527.3:c.891G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.969G>A
  hgvsp: ENST00000537485.1:c.969G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.116G>A
  hgvsp: ENST00000563118.1:c.116G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3076
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3156
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2674
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8789
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1822
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37208
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly367Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

16-29899082-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899082
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899082
    reference: chr 16
allele count: 1
allele frequency: 8.338197281747686e-6
allele num: 119930
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.111C>T
  hgvsp: ENSP00000454654.1:p.Pro38Ser
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1096C>T
  hgvsp: ENSP00000312550.5:p.Pro366Ser
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.964C>T
  hgvsp: ENSP00000439412.1:p.Pro322Ser
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.754C>T
  hgvsp: ENSP00000319215.6:p.Pro252Ser
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.886C>T
  hgvsp: ENSP00000310206.3:p.Pro296Ser
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2658
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3067
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37395
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro366Ser
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

16-29899089-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899089
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899089
    reference: chr 16
allele count: 10
allele frequency: 8.345712807330874e-5
allele num: 119822
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1089C>G
  hgvsp: ENST00000308713.5:c.1089C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.879C>G
  hgvsp: ENST00000350527.3:c.879C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.957C>G
  hgvsp: ENST00000537485.1:c.957C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.747C>G
  hgvsp: ENST00000346932.5:c.747C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.104C>G
  hgvsp: ENST00000563118.1:c.104C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10969
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37261
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3115
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8740
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3060
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser363Ser
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

16-29899090-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899090
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899090
    reference: chr 16
allele count: 1
allele frequency: 8.349475652928997e-6
allele num: 119768
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1088C>T
  hgvsp: ENSP00000312550.5:p.Ser363Phe
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.746C>T
  hgvsp: ENSP00000319215.6:p.Ser249Phe
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.103C>T
  hgvsp: ENSP00000454654.1:p.Ser35Phe
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.878C>T
  hgvsp: ENSP00000310206.3:p.Ser293Phe
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.956C>T
  hgvsp: ENSP00000439412.1:p.Ser319Phe
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8702
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3115
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3050
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser363Phe
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

16-29899094-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899094
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899094
    reference: chr 16
allele count: 25
allele frequency: 2.088833929347281e-4
allele num: 119684
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1084G>A
  hgvsp: ENSP00000312550.5:p.Val362Met
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.874G>A
  hgvsp: ENSP00000310206.3:p.Val292Met
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.952G>A
  hgvsp: ENSP00000439412.1:p.Val318Met
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.742G>A
  hgvsp: ENSP00000319215.6:p.Val248Met
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.99G>A
  hgvsp: ENSP00000454654.1:p.Val34Met
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13480
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26975
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10876
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3092
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36928
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2627
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3058
  bin: 9.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 1470
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val362Met
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum

16-29899095-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899095
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899095
    reference: chr 16
allele count: 51
allele frequency: 4.261078804892721e-4
allele num: 119688
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.951C>T
  hgvsp: ENST00000537485.1:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1083C>T
  hgvsp: ENST00000308713.5:c.1083C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.741C>T
  hgvsp: ENST00000346932.5:c.741C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.98C>T
  hgvsp: ENST00000563118.1:c.98C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.873C>T
  hgvsp: ENST00000350527.3:c.873C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 10847
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13556
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26983
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2629
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3050
  bin: 9.75e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37151
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile361Ile
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-29899099-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899099
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899099
    reference: chr 16
allele count: 3
allele frequency: 2.50890661849566e-5
allele num: 119574
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.94G>A
  hgvsp: ENSP00000454654.1:p.Arg32His
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.947G>A
  hgvsp: ENSP00000439412.1:p.Arg316His
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.869G>A
  hgvsp: ENSP00000310206.3:p.Arg290His
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1079G>A
  hgvsp: ENSP00000312550.5:p.Arg360His
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.737G>A
  hgvsp: ENSP00000319215.6:p.Arg246His
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26848
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1568
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36981
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3070
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2605
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg360His
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

16-29899100-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899100
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899100
    reference: chr 16
allele count: 5
allele frequency: 4.183680299886204e-5
allele num: 119512
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.868C>T
  hgvsp: ENSP00000310206.3:p.Arg290Cys
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.946C>T
  hgvsp: ENSP00000439412.1:p.Arg316Cys
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1078C>T
  hgvsp: ENSP00000312550.5:p.Arg360Cys
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.93C>T
  hgvsp: ENSP00000454654.1:p.Arg32Cys
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.736C>T
  hgvsp: ENSP00000319215.6:p.Arg246Cys
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10685
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2597
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 36739
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8538
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg360Cys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

16-29899102-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899102
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899102
    reference: chr 16
allele count: 1
allele frequency: 8.365540664893172e-6
allele num: 119538
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.944G>A
  hgvsp: ENSP00000439412.1:p.Gly315Asp
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.866G>A
  hgvsp: ENSP00000310206.3:p.Gly289Asp
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1076G>A
  hgvsp: ENSP00000312550.5:p.Gly359Asp
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.734G>A
  hgvsp: ENSP00000319215.6:p.Gly245Asp
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.91G>A
  hgvsp: ENSP00000454654.1:p.Gly31Asp
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1626
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2587
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2977
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37029
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly359Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

16-29899118-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899118
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899118
    reference: chr 16
allele count: 3
allele frequency: 2.520203632453502e-5
allele num: 119038
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.850C>T
  hgvsp: ENSP00000310206.3:p.His284Tyr
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.928C>T
  hgvsp: ENSP00000439412.1:p.His310Tyr
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.718C>T
  hgvsp: ENSP00000319215.6:p.His240Tyr
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.75C>T
  hgvsp: ENSP00000454654.1:p.His26Tyr
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1060C>T
  hgvsp: ENSP00000312550.5:p.His354Tyr
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14073
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8296
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1692
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36643
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2959
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His354Tyr
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

16-29899123-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899123
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899123
    reference: chr 16
allele count: 3781
allele frequency: 3.183839132338576e-2
allele num: 118756
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.923C>A
  hgvsp: ENSP00000439412.1:p.Thr308Asn
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1055C>A
  hgvsp: ENSP00000312550.5:p.Thr352Asn
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.713C>A
  hgvsp: ENSP00000319215.6:p.Thr238Asn
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.70C>A
  hgvsp: ENSP00000454654.1:p.Thr24Asn
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.845C>A
  hgvsp: ENSP00000310206.3:p.Thr282Asn
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.25e1
  variant carriers: 351
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 4.25e1
  variant carriers: 562
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 487
genotype depth: GenotypeDepth
  all individuals: 10081
  bin: 3.25e1
  variant carriers: 409
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 244
genotype depth: GenotypeDepth
  all individuals: 25984
  bin: 2.75e1
  variant carriers: 221
genotype depth: GenotypeDepth
  all individuals: 14092
  bin: 2.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 1.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 3.75e1
  variant carriers: 539
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2675
  bin: 7.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 8.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 7.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8054
  bin: 6.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 3.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 36407
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 3.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 5.25e1
  variant carriers: 7
hgvs: p.Thr352Asn
num of homozygotes: 465
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum

16-29899125-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899125
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899125
    reference: chr 16
allele count: 1
allele frequency: 8.437394532568342e-6
allele num: 118520
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.843C>T
  hgvsp: ENST00000350527.3:c.843C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1053C>T
  hgvsp: ENST00000308713.5:c.1053C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.711C>T
  hgvsp: ENST00000346932.5:c.711C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.68C>T
  hgvsp: ENST00000563118.1:c.68C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.921C>T
  hgvsp: ENST00000537485.1:c.921C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38635
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8419
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly351Gly
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/16-29899126-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899126
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899126
    reference: chr 16
allele count: 1
allele frequency: 8.43981567442567e-6
allele num: 118486
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1052G>T
  hgvsp: ENSP00000312550.5:p.Gly351Val
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.710G>T
  hgvsp: ENSP00000319215.6:p.Gly237Val
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.920G>T
  hgvsp: ENSP00000439412.1:p.Gly307Val
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.842G>T
  hgvsp: ENSP00000310206.3:p.Gly281Val
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.67G>T
  hgvsp: ENSP00000454654.1:p.Gly23Val
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2332
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2365
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2716
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8366
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly351Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

16-29899126-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899126
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899126
    reference: chr 16
allele count: 3
allele frequency: 2.531944702327701e-5
allele num: 118486
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.842G>A
  hgvsp: ENSP00000310206.3:p.Gly281Asp
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.67G>A
  hgvsp: ENSP00000454654.1:p.Gly23Asp
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.920G>A
  hgvsp: ENSP00000439412.1:p.Gly307Asp
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1052G>A
  hgvsp: ENSP00000312550.5:p.Gly351Asp
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.710G>A
  hgvsp: ENSP00000319215.6:p.Gly237Asp
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9967
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2716
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2332
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8366
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2365
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly351Asp
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/16-29899127-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899127
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899127
    reference: chr 16
allele count: 2
allele frequency: 1.687535860137028e-5
allele num: 118516
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.709G>T
  hgvsp: ENSP00000319215.6:p.Gly237Cys
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.919G>T
  hgvsp: ENSP00000439412.1:p.Gly307Cys
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1051G>T
  hgvsp: ENSP00000312550.5:p.Gly351Cys
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.841G>T
  hgvsp: ENSP00000310206.3:p.Gly281Cys
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.66G>T
  hgvsp: ENSP00000454654.1:p.Gly23Cys
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15060
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8387
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2355
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2701
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly351Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

16-29899150-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899150
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899150
    reference: chr 16
allele count: 4
allele frequency: 3.430590576167687e-5
allele num: 116598
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.830-12C>A
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.55-12C>A
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1040-12C>A
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.698-12C>A
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.908-12C>A
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8795
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24754
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7397
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35227
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2028
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

16-29899151-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899151
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899151
    reference: chr 16
allele count: 1
allele frequency: 8.577506347354697e-6
allele num: 116584
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.55-13C>T
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.908-13C>T
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1040-13C>T
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.830-13C>T
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.698-13C>T
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7376
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2010
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4835
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ

16-29899153-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899153
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899153
    reference: chr 16
allele count: 1
allele frequency: 8.591951060246761e-6
allele num: 116388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.698-15C>T
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.830-15C>T
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.55-15C>T
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.908-15C>T
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1040-15C>T
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7295
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5198
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1668
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

16-29899155-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899155
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899155
    reference: chr 16
allele count: 1
allele frequency: 8.607037113544033e-6
allele num: 116184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.55-17C>T
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1040-17C>T
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.830-17C>T
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.908-17C>T
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.698-17C>T
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6729
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8262
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32328
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2229
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1894
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1802
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6933
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5871
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1301
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-29899157-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899157
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899157
    reference: chr 16
allele count: 1
allele frequency: 8.616975441619991e-6
allele num: 116050
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.698-19A>C
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.908-19A>C
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.55-19A>C
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1040-19A>C
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.830-19A>C
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6763
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22740
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5888
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1809
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2200
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2175
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

16-29899157-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899157
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899156
    reference: chr 16
allele count: 1
allele frequency: 8.616975441619991e-6
allele num: 116050
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.830-20delT
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.908-20delT
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1040-20delT
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.698-20delT
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.55-20delT
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6763
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13698
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22740
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6786
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2175
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5888
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2200
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1809
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: TA
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

16-29899159-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899159
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899159
    reference: chr 16
allele count: 25
allele frequency: 2.156027390171965e-4
allele num: 115954
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.830-21G>A
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.908-21G>A
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.55-21G>A
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1040-21G>A
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.698-21G>A
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22142
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13262
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7962
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1991
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6310
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

16-29899160-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899160
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899160
    reference: chr 16
allele count: 3
allele frequency: 2.590584090359573e-5
allele num: 115804
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1040-22C>T
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.55-22C>T
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.830-22C>T
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.908-22C>T
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.698-22C>T
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8025
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21355
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12778
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6658
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2978
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6300
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 30300
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2219
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP

16-29899166-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899166
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899166
    reference: chr 16
allele count: 14
allele frequency: 1.211995290532585e-4
allele num: 115512
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.698-28C>T
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.830-28C>T
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1040-28C>T
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.908-28C>T
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.55-28C>T
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7096
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11530
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7371
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18605
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7522
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2912
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4278
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2892
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26257
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

16-29899173-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899173
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899173
    reference: chr 16
allele count: 4
allele frequency: 3.482803656943839e-5
allele num: 114850
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.55-35A>G
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.908-35A>G
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1040-35A>G
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.698-35A>G
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.830-35A>G
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12369
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5908
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4815
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3567
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-29899177-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29899177
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 29899177
    reference: chr 16
allele count: 1
allele frequency: 8.732861758798358e-6
allele num: 114510
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000439412
  ensembl transcript: ENST00000537485
  gene symbol: SEZ6L2
  hgvsc: ENST00000537485.1:c.908-39C>T
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000310206
  ensembl transcript: ENST00000350527
  gene symbol: SEZ6L2
  hgvsc: ENST00000350527.3:c.830-39C>T
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000454654
  ensembl transcript: ENST00000563118
  gene symbol: SEZ6L2
  hgvsc: ENST00000563118.1:c.55-39C>T
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000312550
  ensembl transcript: ENST00000308713
  gene symbol: SEZ6L2
  hgvsc: ENST00000308713.5:c.1040-39C>T
  variant of: http://identifiers.org/hgnc/30844
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174938
  ensembl protein: ENSP00000319215
  ensembl transcript: ENST00000346932
  gene symbol: SEZ6L2
  hgvsc: ENST00000346932.5:c.698-39C>T
  variant of: http://identifiers.org/hgnc/30844
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10288
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2797
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13671
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5660
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20966
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8193
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4656
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3684
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

14-103597501-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597501
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597501
    reference: chr 14
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*264+14G>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.305+14G>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1298+14G>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*625+14G>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.649+14G>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1298+14G>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.377+14G>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.55+14G>C
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3561
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7898
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP

14-103597505-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597505
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597505
    reference: chr 14
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.649+18G>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.305+18G>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1298+18G>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.55+18G>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.377+18G>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1298+18G>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*264+18G>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*625+18G>C
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3561
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4306
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7864
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

14-103597508-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597508
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597508
    reference: chr 14
allele count: 368
allele frequency: 3.034851308779627e-3
allele num: 121258
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1298+21T>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.305+21T>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*625+21T>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.55+21T>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.377+21T>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1298+21T>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*264+21T>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.649+21T>C
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 8217
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 14573
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 5268
  bin: 4.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11902
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12896
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 5.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15366
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5792
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

14-103597510-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597510
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597510
    reference: chr 14
allele count: 1
allele frequency: 8.248375070111188e-6
allele num: 121236
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*625+23G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.55+23G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1298+23G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.649+23G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.377+23G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.305+23G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*264+23G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1298+23G>A
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3564
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15133
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

14-103597511-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597511
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597511
    reference: chr 14
allele count: 3
allele frequency: 2.475124993812188e-5
allele num: 121206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.649+24C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*264+24C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.305+24C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.55+24C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1298+24C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.377+24C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*625+24C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1298+24C>T
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4919
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2784
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7801
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

14-103597519-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597519
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597519
    reference: chr 14
allele count: 1
allele frequency: 8.250961236984109e-6
allele num: 121198
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1298+32G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.305+32G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.55+32G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.377+32G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1298+32G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*264+32G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.649+32G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*625+32G>A
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12907
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15137
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4915
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2778
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/14-103597521-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597521
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597521
    reference: chr 14
allele count: 1
allele frequency: 8.251914444151043e-6
allele num: 121184
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*625+34A>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.649+34A>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.377+34A>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.305+34A>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.55+34A>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1298+34A>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1298+34A>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*264+34A>C
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14366
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

14-103597525-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597525
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597525
    reference: chr 14
allele count: 578
allele frequency: 4.771417721936964e-3
allele num: 121138
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.305+38A>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1298+38A>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.55+38A>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.649+38A>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1298+38A>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.377+38A>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*625+38A>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*264+38A>G
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 5.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 11070
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 5.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 6.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 4.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 5367
  bin: 4.25e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 8261
  bin: 3.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 12800
  bin: 3.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 14148
  bin: 2.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4191
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4846
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 9
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

14-103597530-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597530
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597530
    reference: chr 14
allele count: 1
allele frequency: 8.255456856982466e-6
allele num: 121132
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*625+43G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.377+43G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1298+43G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.649+43G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.55+43G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1298+43G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*264+43G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.305+43G>A
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8262
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4894
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7505
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

14-103597531-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597531
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597531
    reference: chr 14
allele count: 2
allele frequency: 1.652319029758266e-5
allele num: 121042
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.377+44C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.305+44C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*264+44C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.649+44C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1298+44C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1298+44C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.55+44C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*625+44C>T
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4867
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3562
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2760
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7421
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

14-103597532-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597532
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597532
    reference: chr 14
allele count: 114
allele frequency: 9.41946358633682e-4
allele num: 121026
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*264+45G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1298+45G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.377+45G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1298+45G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.649+45G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.305+45G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.55+45G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*625+45G>A
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5401
  bin: 4.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 8299
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11243
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13804
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12712
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3156
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3552
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

14-103597532-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597532
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597532
    reference: chr 14
allele count: 1
allele frequency: 8.262687356435807e-6
allele num: 121026
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*264+45G>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*625+45G>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.649+45G>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1298+45G>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.377+45G>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1298+45G>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.55+45G>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.305+45G>C
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15311
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5704
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3552
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7262
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

14-103597538-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597538
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597538
    reference: chr 14
allele count: 1
allele frequency: 8.262687356435807e-6
allele num: 121026
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1298+51G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.55+51G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1298+51G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*264+51G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.649+51G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.377+51G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*625+51G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.305+51G>A
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

14-103597926-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597926
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597926
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 51214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1299-50G>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.650-50G>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.306-50G>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*265-50G>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1299-50G>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.378-50G>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.56-50G>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*626-50G>T
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26113
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8471
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4114
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7716
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6196
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

14-103597938-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597938
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597938
    reference: chr 14
allele count: 8
allele frequency: 1.60655474335288e-4
allele num: 49796
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.650-38A>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*265-38A>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*626-38A>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.56-38A>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.378-38A>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1299-38A>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1299-38A>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.306-38A>G
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16099
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7892
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3343
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6660
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

14-103597945-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597945
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597945
    reference: chr 14
allele count: 48
allele frequency: 9.247129536872929e-4
allele num: 51908
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1299-31C>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1299-31C>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*265-31C>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.306-31C>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.378-31C>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.650-31C>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*626-31C>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.56-31C>G
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27181
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6986
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15849
  bin: 1.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24816
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6069
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3076
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2668
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 1
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

14-103597954-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597954
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597954
    reference: chr 14
allele count: 1
allele frequency: 1.812710727622086e-5
allele num: 55166
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.56-22C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*265-22C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*626-22C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.650-22C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.378-22C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1299-22C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1299-22C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.306-22C>T
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15543
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4879
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5575
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

14-103597958-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597958
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597958
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 56542
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*265-18T>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*626-18T>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1299-18T>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.306-18T>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1299-18T>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.650-18T>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.56-18T>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.378-18T>A
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27414
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14964
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4670
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2394
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1425
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

14-103597965-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597965
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597965
    reference: chr 14
allele count: 1
allele frequency: 1.695202576707917e-5
allele num: 58990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.56-11C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.378-11C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1299-11C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*265-11C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.306-11C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.650-11C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1299-11C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*626-11C>T
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9656
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5060
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

14-103597978-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597978
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597978
    reference: chr 14
allele count: 1
allele frequency: 1.5253668507276e-5
allele num: 65558
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1301T>C
  hgvsp: ENSP00000332326.1:p.Met434Thr
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*267T>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1301T>C
  hgvsp: ENSP00000452634.1:p.Met434Thr
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.308T>C
  hgvsp: ENSP00000393256.2:p.Met103Thr
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.380T>C
  hgvsp: ENSP00000453142.1:p.Met127Thr
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.652T>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*628T>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.58T>C
  hgvsp: ENSP00000453458.1:p.Met20Thr
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12958
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Met434Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

14-103597979-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597979
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597979
    reference: chr 14
allele count: 1
allele frequency: 1.518141794443601e-5
allele num: 65870
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1302G>A
  hgvsp: ENSP00000452634.1:p.Met434Ile
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.59G>A
  hgvsp: ENSP00000453458.1:p.Met20Ile
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.653G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1302G>A
  hgvsp: ENSP00000332326.1:p.Met434Ile
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.309G>A
  hgvsp: ENSP00000393256.2:p.Met103Ile
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*629G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.381G>A
  hgvsp: ENSP00000453142.1:p.Met127Ile
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*268G>A
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12834
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13143
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4518
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4796
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2119
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Met434Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

14-103597983-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597983
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597983
    reference: chr 14
allele count: 4
allele frequency: 5.851375073142189e-5
allele num: 68360
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.385A>G
  hgvsp: ENSP00000453142.1:p.Met129Val
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1306A>G
  hgvsp: ENSP00000452634.1:p.Met436Val
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.313A>G
  hgvsp: ENSP00000393256.2:p.Met105Val
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.657A>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.63A>G
  hgvsp: ENSP00000453458.1:p.Met22Val
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1306A>G
  hgvsp: ENSP00000332326.1:p.Met436Val
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*272A>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*633A>G
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14120
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4396
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met436Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

14-103597988-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597988
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597988
    reference: chr 14
allele count: 1
allele frequency: 1.410556605636584e-5
allele num: 70894
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.390G>A
  hgvsp: ENST00000560670.1:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.662G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*277G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*638G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1311G>A
  hgvsp: ENST00000333007.1:c.1311G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.68G>A
  hgvsp: ENST00000561156.1:c.68G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1311G>A
  hgvsp: ENST00000560869.1:c.1311G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.318G>A
  hgvsp: ENST00000451723.2:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12098
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu437Glu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

14-103597989-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597989
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597989
    reference: chr 14
allele count: 1
allele frequency: 1.397194433577377e-5
allele num: 71572
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.319C>T
  hgvsp: ENSP00000393256.2:p.Gln107Ter
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*639C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.391C>T
  hgvsp: ENSP00000453142.1:p.Gln131Ter
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.663C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1312C>T
  hgvsp: ENSP00000332326.1:p.Gln438Ter
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.69C>T
  hgvsp: ENSP00000453458.1:p.Gln24Ter
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1312C>T
  hgvsp: ENSP00000452634.1:p.Gln438Ter
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*278C>T
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12039
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22996
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4298
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln438Ter
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

14-103597994-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103597994
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103597994
    reference: chr 14
allele count: 1
allele frequency: 1.341237694144156e-5
allele num: 74558
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.668T>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1317T>C
  hgvsp: ENST00000560869.1:c.1317T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*644T>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1317T>C
  hgvsp: ENST00000333007.1:c.1317T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.74T>C
  hgvsp: ENST00000561156.1:c.74T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.396T>C
  hgvsp: ENST00000560670.1:c.396T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*283T>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.324T>C
  hgvsp: ENST00000451723.2:c.324T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11550
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4342
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn439Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

14-103598002-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103598002
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103598002
    reference: chr 14
allele count: 42
allele frequency: 5.465476407360175e-4
allele num: 76846
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1325T>G
  hgvsp: ENSP00000332326.1:p.Val442Gly
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.332T>G
  hgvsp: ENSP00000393256.2:p.Val111Gly
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.404T>G
  hgvsp: ENSP00000453142.1:p.Val135Gly
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1325T>G
  hgvsp: ENSP00000452634.1:p.Val442Gly
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.82T>G
  hgvsp: ENSP00000453458.1:p.Val28Gly
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.676T>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*291T>G
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*652T>G
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18599
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 18815
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11036
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1606
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18218
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1629
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 5.75e1
  variant carriers: 2
hgvs: p.Val442Gly
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

14-103598004-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103598004
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103598004
    reference: chr 14
allele count: 1
allele frequency: 1.219660934260276e-5
allele num: 81990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.84C>T
  hgvsp: ENSP00000453458.1:p.Pro29Ser
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.334C>T
  hgvsp: ENSP00000393256.2:p.Pro112Ser
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*654C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1327C>T
  hgvsp: ENSP00000452634.1:p.Pro443Ser
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.678C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.406C>T
  hgvsp: ENSP00000453142.1:p.Pro136Ser
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1327C>T
  hgvsp: ENSP00000332326.1:p.Pro443Ser
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*293C>T
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10959
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17719
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19677
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3966
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro443Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/14-103598019-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103598019
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103598019
    reference: chr 14
allele count: 1
allele frequency: 1.03913377808259e-5
allele num: 96234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.349A>C
  hgvsp: ENSP00000393256.2:p.Ser117Arg
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.693A>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*669A>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1342A>C
  hgvsp: ENSP00000332326.1:p.Ser448Arg
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.99A>C
  hgvsp: ENSP00000453458.1:p.Ser34Arg
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.421A>C
  hgvsp: ENSP00000453142.1:p.Ser141Arg
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1342A>C
  hgvsp: ENSP00000452634.1:p.Ser448Arg
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*308A>C
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11923
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2638
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2913
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser448Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/14-103598021-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103598021
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103598021
    reference: chr 14
allele count: 250
allele frequency: 2.558068146935434e-3
allele num: 97730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.351C>A
  hgvsp: ENSP00000393256.2:p.Ser117Arg
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1344C>A
  hgvsp: ENSP00000332326.1:p.Ser448Arg
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*671C>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*310C>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.423C>A
  hgvsp: ENSP00000453142.1:p.Ser141Arg
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1344C>A
  hgvsp: ENSP00000452634.1:p.Ser448Arg
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.101C>A
  hgvsp: ENSP00000453458.1:p.Ser34Arg
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.695C>A
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 3.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 1.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 1.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 29225
  bin: 2.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8127
  bin: 2.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11185
  bin: 7.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2405
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2930
  bin: 6.75e1
  variant carriers: 1
hgvs: p.Ser448Arg
num of homozygotes: 3
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

14-103598021-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103598021
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103598021
    reference: chr 14
allele count: 7
allele frequency: 7.162590811419217e-5
allele num: 97730
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.695C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1344C>T
  hgvsp: ENST00000333007.1:c.1344C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.351C>T
  hgvsp: ENST00000451723.2:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*310C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.423C>T
  hgvsp: ENST00000560670.1:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*671C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.101C>T
  hgvsp: ENST00000561156.1:c.101C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1344C>T
  hgvsp: ENST00000560869.1:c.1344C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11185
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29225
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2930
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2437
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser448Ser
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum

14-103598022-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103598022
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103598022
    reference: chr 14
allele count: 1
allele frequency: 1.012330181612035e-5
allele num: 98782
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1345C>T
  hgvsp: ENSP00000452634.1:p.Leu449Phe
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1345C>T
  hgvsp: ENSP00000332326.1:p.Leu449Phe
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.352C>T
  hgvsp: ENSP00000393256.2:p.Leu118Phe
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.696C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.102C>T
  hgvsp: ENSP00000453458.1:p.Leu35Phe
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.424C>T
  hgvsp: ENSP00000453142.1:p.Leu142Phe
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*311C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*672C>T
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6604
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33651
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu449Phe
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

14-103598024-CCTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103598024
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103598021
    reference: chr 14
allele count: 1
allele frequency: 1.00142201926736e-5
allele num: 99858
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1351_1353delCTG
  hgvsp: ENSP00000332326.1:p.Leu451del
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.358_360delCTG
  hgvsp: ENSP00000393256.2:p.Leu120del
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*678_*680delCTG
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.702_704delCTG
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*317_*319delCTG
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.430_432delCTG
  hgvsp: ENSP00000453142.1:p.Leu144del
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.108_110delCTG
  hgvsp: ENSP00000453458.1:p.Leu37del
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1351_1353delCTG
  hgvsp: ENSP00000452634.1:p.Leu451del
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11986
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2181
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu451del
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: CCTG
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

14-103598029-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103598029
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103598029
    reference: chr 14
allele count: 2
allele frequency: 1.92949620853995e-5
allele num: 103654
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.703T>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.431T>C
  hgvsp: ENSP00000453142.1:p.Leu144Pro
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.359T>C
  hgvsp: ENSP00000393256.2:p.Leu120Pro
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1352T>C
  hgvsp: ENSP00000452634.1:p.Leu451Pro
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*679T>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*318T>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.109T>C
  hgvsp: ENSP00000453458.1:p.Leu37Pro
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1352T>C
  hgvsp: ENSP00000332326.1:p.Leu451Pro
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8471
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4937
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9588
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3329
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu451Pro
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

14-103598034-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103598034
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103598034
    reference: chr 14
allele count: 2
allele frequency: 1.87167777195478e-5
allele num: 106856
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.436C>T
  hgvsp: ENSP00000453142.1:p.Pro146Ser
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.114C>T
  hgvsp: ENSP00000453458.1:p.Pro39Ser
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*323C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.364C>T
  hgvsp: ENSP00000393256.2:p.Pro122Ser
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1357C>T
  hgvsp: ENSP00000452634.1:p.Pro453Ser
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*684C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1357C>T
  hgvsp: ENSP00000332326.1:p.Pro453Ser
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.708C>T
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10386
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6905
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8167
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1334
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro453Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

14-103598043-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103598043
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103598043
    reference: chr 14
allele count: 1
allele frequency: 9.025433672087943e-6
allele num: 110798
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*693G>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.373G>T
  hgvsp: ENSP00000393256.2:p.Glu125Ter
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.717G>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.123G>T
  hgvsp: ENSP00000453458.1:p.Glu42Ter
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1366G>T
  hgvsp: ENSP00000332326.1:p.Glu456Ter
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.445G>T
  hgvsp: ENSP00000453142.1:p.Glu149Ter
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*332G>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1366G>T
  hgvsp: ENSP00000452634.1:p.Glu456Ter
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3908
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5987
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu456Ter
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

14-103598046-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103598046
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103598046
    reference: chr 14
allele count: 1
allele frequency: 8.94774516821761e-6
allele num: 111760
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1369C>T
  hgvsp: ENSP00000452634.1:p.Leu457Phe
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.448C>T
  hgvsp: ENSP00000453142.1:p.Leu150Phe
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.720C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1369C>T
  hgvsp: ENSP00000332326.1:p.Leu457Phe
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.126C>T
  hgvsp: ENSP00000453458.1:p.Leu43Phe
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*335C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*696C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.376C>T
  hgvsp: ENSP00000393256.2:p.Leu126Phe
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11752
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4605
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu457Phe
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

14-103598047-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103598047
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103598047
    reference: chr 14
allele count: 1
allele frequency: 8.920924921495861e-6
allele num: 112096
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.449T>C
  hgvsp: ENSP00000453142.1:p.Leu150Pro
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.721T>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.377T>C
  hgvsp: ENSP00000393256.2:p.Leu126Pro
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1370T>C
  hgvsp: ENSP00000452634.1:p.Leu457Pro
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1370T>C
  hgvsp: ENSP00000332326.1:p.Leu457Pro
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*336T>C
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.127T>C
  hgvsp: ENSP00000453458.1:p.Leu43Pro
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*697T>C
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11884
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu457Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: T
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

14-103598048-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103598048
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103598048
    reference: chr 14
allele count: 1
allele frequency: 8.89901398924999e-6
allele num: 112372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*337C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.722C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1371C>T
  hgvsp: ENST00000560869.1:c.1371C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.128C>T
  hgvsp: ENST00000561156.1:c.128C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1371C>T
  hgvsp: ENST00000333007.1:c.1371C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.378C>T
  hgvsp: ENST00000451723.2:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.450C>T
  hgvsp: ENST00000560670.1:c.450C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*698C>T
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11980
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4044
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5149
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu457Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

14-103598051-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103598051
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103598050
    reference: chr 14
allele count: 1
allele frequency: 8.830022075055188e-6
allele num: 113250
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*702delA
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.454delA
  hgvsp: ENSP00000453142.1:p.Ser152AlafsTer15
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*341delA
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1375delA
  hgvsp: ENSP00000332326.1:p.Ser459AlafsTer15
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.382delA
  hgvsp: ENSP00000393256.2:p.Ser128AlafsTer15
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.726delA
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1375delA
  hgvsp: ENSP00000452634.1:p.Ser459AlafsTer15
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.132delA
  hgvsp: ENSP00000453458.1:p.Ser45AlafsTer15
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser459AlafsTer15
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: GA
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS

14-103598057-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103598057
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103598057
    reference: chr 14
allele count: 5
allele frequency: 4.37047655676375e-5
allele num: 114404
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1380C>T
  hgvsp: ENST00000560869.1:c.1380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1380C>T
  hgvsp: ENST00000333007.1:c.1380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*346C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.459C>T
  hgvsp: ENST00000560670.1:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.387C>T
  hgvsp: ENST00000451723.2:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*707C>T
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.137C>T
  hgvsp: ENST00000561156.1:c.137C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.731C>T
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12635
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46838
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4143
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His460His
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ

14-103598058-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 103598058
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 103598058
    reference: chr 14
allele count: 1
allele frequency: 8.725851206785222e-6
allele num: 114602
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452634
  ensembl transcript: ENST00000560869
  gene symbol: TNFAIP2
  hgvsc: ENST00000560869.1:c.1381G>A
  hgvsp: ENSP00000452634.1:p.Gly461Ser
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000332326
  ensembl transcript: ENST00000333007
  gene symbol: TNFAIP2
  hgvsc: ENST00000333007.1:c.1381G>A
  hgvsp: ENSP00000332326.1:p.Gly461Ser
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452992
  ensembl transcript: ENST00000559406
  gene symbol: TNFAIP2
  hgvsc: ENST00000559406.1:c.*708G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185215
  ensembl transcript: ENST00000560428
  gene symbol: TNFAIP2
  hgvsc: ENST00000560428.1:n.732G>A
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000393256
  ensembl transcript: ENST00000451723
  gene symbol: TNFAIP2
  hgvsc: ENST00000451723.2:c.388G>A
  hgvsp: ENSP00000393256.2:p.Gly130Ser
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453142
  ensembl transcript: ENST00000560670
  gene symbol: TNFAIP2
  hgvsc: ENST00000560670.1:c.460G>A
  hgvsp: ENSP00000453142.1:p.Gly154Ser
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000453458
  ensembl transcript: ENST00000561156
  gene symbol: TNFAIP2
  hgvsc: ENST00000561156.1:c.138G>A
  hgvsp: ENSP00000453458.1:p.Gly47Ser
  variant of: http://identifiers.org/hgnc/11895
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185215
  ensembl protein: ENSP00000452824
  ensembl transcript: ENST00000560562
  gene symbol: TNFAIP2
  hgvsc: ENST00000560562.1:c.*347G>A
  variant of: http://identifiers.org/hgnc/11895
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12756
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly461Ser
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 8466
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 311
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3090
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3078
bin: 9.75e1
variant carriers: 39

GenotypeQuality
all individuals: 168
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 317
bin: 4.25e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.561036528254761e-4
allele num: 6406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 58
allele frequency: 9.019656631002737e-4
allele num: 64304
num of homozygotes: 0

African
type: Population
allele count: 32
allele frequency: 3.266639444671295e-3
allele num: 9796
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.493246390312063e-4
allele num: 8588
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQ
type: SiteQuality
SIO_000300: 5.85e1

FS
type: SiteQuality
SIO_000300: 3.0328e2

QD
type: SiteQuality
SIO_000300: 1.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.964e0

VQSLOD
type: SiteQuality
SIO_000300: -4.243e2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.217e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

DP
type: SiteQuality
SIO_000300: 1.751061e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e0

GenotypeQuality
all individuals: 3106
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 270
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1874
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 2.924546695262235e-4
allele num: 10258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.062828338040144e-4
allele num: 65862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15880
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160092807424594e-4
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.818e0

MQ
type: SiteQuality
SIO_000300: 5.759e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.003e0

FS
type: SiteQuality
SIO_000300: 1.60527e2

MQRankSum
type: SiteQuality
SIO_000300: -2.84e-1

QD
type: SiteQuality
SIO_000300: 2.15e0

VQSLOD
type: SiteQuality
SIO_000300: -1.246e2

DP
type: SiteQuality
SIO_000300: 1.717578e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
all individuals: 1168
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2713
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 921
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.518372304889159e-4
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65932
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.285e1

DP
type: SiteQuality
SIO_000300: 1.716515e6

QD
type: SiteQuality
SIO_000300: 1.119e1

VQSLOD
type: SiteQuality
SIO_000300: -2.199e0

MQ
type: SiteQuality
SIO_000300: 5.921e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.994e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.74e-1

GenotypeQuality
all individuals: 720
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36748
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8987
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15914
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516806212838248e-5
allele num: 65928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.27e-1

DP
type: SiteQuality
SIO_000300: 1.715944e6

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

FS
type: SiteQuality
SIO_000300: 3.609e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.433e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

VQSLOD
type: SiteQuality
SIO_000300: 2.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.235e0

QD
type: SiteQuality
SIO_000300: 1.535e1

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3182
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730702665282105e-4
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16064
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.946e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e0

DP
type: SiteQuality
SIO_000300: 1.71388e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.69e-1

FS
type: SiteQuality
SIO_000300: 7.098e0

QD
type: SiteQuality
SIO_000300: 1.333e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.8e-2

GenotypeQuality
all individuals: 903
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517865274278255e-5
allele num: 65882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16220
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.8e-2

MQ
type: SiteQuality
SIO_000300: 5.907e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.22e0

FS
type: SiteQuality
SIO_000300: 1.292e0

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.581e0

DP
type: SiteQuality
SIO_000300: 1.712736e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

QD
type: SiteQuality
SIO_000300: 1.545e1

GenotypeQuality
all individuals: 8777
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3132
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518372304889159e-5
allele num: 65860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 1.711077e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.432e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.39e-1

QD
type: SiteQuality
SIO_000300: 1.502e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.078e0

GenotypeQuality
all individuals: 2642
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1784
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.520034048762692e-4
allele num: 65788
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.939e1

VQSLOD
type: SiteQuality
SIO_000300: 8.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.04e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

DP
type: SiteQuality
SIO_000300: 1.70743e6

QD
type: SiteQuality
SIO_000300: 1.233e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

FS
type: SiteQuality
SIO_000300: 3.625e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.773e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

GenotypeQuality
all individuals: 1414
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37034
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2636
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520635017183176e-5
allele num: 65762
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.533e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.216e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.286e0

DP
type: SiteQuality
SIO_000300: 1.705141e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.734e-1

QD
type: SiteQuality
SIO_000300: 9.77e0

GenotypeQuality
all individuals: 881
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8635
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 23
allele frequency: 3.499056775999513e-4
allele num: 65732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.671522719389525e-5
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.128201985537444e-5
allele num: 16318
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.7029e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.79e-2

QD
type: SiteQuality
SIO_000300: 1.37e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.76e0

MQ
type: SiteQuality
SIO_000300: 5.93e1

MQRankSum
type: SiteQuality
SIO_000300: 7.3e-2

GenotypeQuality
all individuals: 155
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3094
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8642
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1771
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.869719699960521e-5
allele num: 10132
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.46860908775581e-4
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.247191011235955e-3
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.564681537384742e-5
allele num: 65722
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.125199068969742e-5
allele num: 16326
num of homozygotes: 0

East Asian
type: Population
allele count: 40
allele frequency: 4.641448131817127e-3
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.701993e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

QD
type: SiteQuality
SIO_000300: 1.19e1

VQSLOD
type: SiteQuality
SIO_000300: 4.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.879e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.43e-1

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8578
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1763
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2990
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 245
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.734906315058987e-4
allele num: 11528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522626225714112e-5
allele num: 65676
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.498e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

FS
type: SiteQuality
SIO_000300: 1.816e0

VQSLOD
type: SiteQuality
SIO_000300: -2.427e-1

DP
type: SiteQuality
SIO_000300: 1.697946e6

QD
type: SiteQuality
SIO_000300: 7.87e0

GenotypeQuality
all individuals: 337
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3065
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16330
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.980590215884333e-4
allele num: 10098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.046829773620548e-5
allele num: 65642
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.677542519958348e-5
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

FS
type: SiteQuality
SIO_000300: 6.6e0

QD
type: SiteQuality
SIO_000300: 1.304e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-2

MQ
type: SiteQuality
SIO_000300: 5.945e1

DP
type: SiteQuality
SIO_000300: 1.694223e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

GenotypeQuality
all individuals: 3053
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8519
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523043650431021e-5
allele num: 65658
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

VQSLOD
type: SiteQuality
SIO_000300: -4.215e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.519e0

QD
type: SiteQuality
SIO_000300: 1.419e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.692898e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.428e0

GenotypeQuality
all individuals: 100
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2911
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.587015687593652e-5
allele num: 65402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6288
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

DP
type: SiteQuality
SIO_000300: 1.676785e6

FS
type: SiteQuality
SIO_000300: 1.777e0

QD
type: SiteQuality
SIO_000300: 1.331e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-2

MQ
type: SiteQuality
SIO_000300: 5.931e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

GenotypeQuality
all individuals: 2154
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 188
bin: 4.75e1
variant carriers: 8

GenotypeQuality
all individuals: 85
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 625
bin: 9.25e1
variant carriers: 31

GenotypeQuality
all individuals: 4241
bin: 9.75e1
variant carriers: 3144

GenotypeQuality
all individuals: 475
bin: 8.75e1
variant carriers: 18

East Asian
type: Population
allele count: 2758
allele frequency: 3.213703099510604e-1
allele num: 8582
num of homozygotes: 440

European (Non-Finnish)
type: Population
allele count: 114
allele frequency: 1.747126436781609e-3
allele num: 65250
num of homozygotes: 0

Other
type: Population
allele count: 10
allele frequency: 1.141552511415525e-2
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 34
allele frequency: 3.406813627254509e-3
allele num: 9980
num of homozygotes: 0

Latino
type: Population
allele count: 721
allele frequency: 6.288156288156288e-2
allele num: 11466
num of homozygotes: 24

South Asian
type: Population
allele count: 93
allele frequency: 5.690857912128259e-3
allele num: 16342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 51
allele frequency: 8.146964856230033e-3
allele num: 6260
num of homozygotes: 1

MQ
type: SiteQuality
SIO_000300: 5.939e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.207e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.796e0

VQSLOD
type: SiteQuality
SIO_000300: 8.279999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.09e-1

FS
type: SiteQuality
SIO_000300: 5.96e-1

DP
type: SiteQuality
SIO_000300: 1.677663e6

QD
type: SiteQuality
SIO_000300: 1.574e1

MQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

GenotypeQuality
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2741
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2312
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65110
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.608234158893535e-4
allele num: 6218
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.611289e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.362e-1

FS
type: SiteQuality
SIO_000300: 2.162e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.254e0

QD
type: SiteQuality
SIO_000300: 1.663e1

MQ
type: SiteQuality
SIO_000300: 5.545e1

GenotypeQuality
all individuals: 219
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38776
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1128
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 153
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65094
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.608234158893535e-4
allele num: 6218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-1

QD
type: SiteQuality
SIO_000300: 1.485e1

VQSLOD
type: SiteQuality
SIO_000300: 6.4e-1

FS
type: SiteQuality
SIO_000300: 4.989e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.353e0

MQRankSum
type: SiteQuality
SIO_000300: -3.67e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 1.610813e6

GenotypeQuality
all individuals: 38776
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1459
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.835311391166035e-4
allele num: 16346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9936
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6218
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.4e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.353e0

FS
type: SiteQuality
SIO_000300: 4.989e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-1

QD
type: SiteQuality
SIO_000300: 1.485e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-1

DP
type: SiteQuality
SIO_000300: 1.610813e6

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2384
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1450
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38967
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535673700052213e-5
allele num: 65118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.609787508048938e-4
allele num: 6212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.83e0

FS
type: SiteQuality
SIO_000300: 2.873e0

DP
type: SiteQuality
SIO_000300: 1.60938e6

QD
type: SiteQuality
SIO_000300: 1.127e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.086e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.407e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1307
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4813
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.232082762059081e-5
allele num: 64184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.87e-1

FS
type: SiteQuality
SIO_000300: 9.444000000000001e0

DP
type: SiteQuality
SIO_000300: 1.529282e6

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.031e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.939e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.51e-1

QD
type: SiteQuality
SIO_000300: 1.213e1

GenotypeQuality
all individuals: 1325
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35483
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2337
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 292
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.557972143458075e-5
allele num: 64186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5968
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.173e0

QD
type: SiteQuality
SIO_000300: 4.23e0

MQRankSum
type: SiteQuality
SIO_000300: 7.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.246e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.972e0

DP
type: SiteQuality
SIO_000300: 1.528283e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

GenotypeQuality
all individuals: 543
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34576
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5954
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.183431952662722e-4
allele num: 8450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64088
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16100
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.102e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: 4.48e-1

QD
type: SiteQuality
SIO_000300: 1.368e1

DP
type: SiteQuality
SIO_000300: 1.514644e6

GenotypeQuality
all individuals: 634
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2203
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5926
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.215040397762585e-5
allele num: 16090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11214
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.938e1

MQRankSum
type: SiteQuality
SIO_000300: -4.45e-1

QD
type: SiteQuality
SIO_000300: 1.153e1

DP
type: SiteQuality
SIO_000300: 1.487452e6

VQSLOD
type: SiteQuality
SIO_000300: 6.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.487e0

GenotypeQuality
all individuals: 6786
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32840
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 596
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63922
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9724
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.220452848967405e-5
allele num: 16076
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.98e-1

FS
type: SiteQuality
SIO_000300: 9.358000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 9.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

QD
type: SiteQuality
SIO_000300: 1.303e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.129e0

DP
type: SiteQuality
SIO_000300: 1.483274e6

GenotypeQuality
all individuals: 478
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32840
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.220452848967405e-5
allele num: 16076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63922
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.129e0

DP
type: SiteQuality
SIO_000300: 1.483274e6

VQSLOD
type: SiteQuality
SIO_000300: 9.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.17e-1

FS
type: SiteQuality
SIO_000300: 9.358000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

QD
type: SiteQuality
SIO_000300: 1.303e1

GenotypeQuality
all individuals: 2539
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32127
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6649
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 9.75e1
variant carriers: 25

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9708
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 3.445251816587322e-4
allele num: 63856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5890
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.227425582264292e-5
allele num: 16058
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.78826895565093e-4
allele num: 11184
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 1.469651e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

FS
type: SiteQuality
SIO_000300: 8.92e-1

QD
type: SiteQuality
SIO_000300: 1.214e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

GenotypeQuality
all individuals: 385
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1158
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2078
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1737
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63780
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.190759704691593e-4
allele num: 8398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.246105919003115e-4
allele num: 16050
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11176
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.907e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

FS
type: SiteQuality
SIO_000300: 1.147e0

MQRankSum
type: SiteQuality
SIO_000300: 5.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.74e-1

QD
type: SiteQuality
SIO_000300: 1.159e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.511e0

DP
type: SiteQuality
SIO_000300: 1.450951e6

GenotypeQuality
all individuals: 1070
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 1139
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5884
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 379
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9674
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 8.73689465801298e-4
allele num: 16024
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5818
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.397599e6

MQ
type: SiteQuality
SIO_000300: 5.909e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

FS
type: SiteQuality
SIO_000300: 1.82e0

MQRankSum
type: SiteQuality
SIO_000300: 6.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.489e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.48e-1

QD
type: SiteQuality
SIO_000300: 1.201e1

GenotypeQuality
all individuals: 4652
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8071
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21466
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 903
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.318716036901302e-5
allele num: 63304
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11050
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.903e1

VQSLOD
type: SiteQuality
SIO_000300: 9.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.936e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.8e-1

QD
type: SiteQuality
SIO_000300: 1.155e1

FS
type: SiteQuality
SIO_000300: 2.156e0

DP
type: SiteQuality
SIO_000300: 1.329605e6

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.96e-1

GenotypeQuality
all individuals: 1627
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1677
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6244
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5708
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.291682395872656e-5
allele num: 15894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11018
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8318
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.493e0

VQSLOD
type: SiteQuality
SIO_000300: -8.018999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.369e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.313139e6

QD
type: SiteQuality
SIO_000300: 8.81e0

GenotypeQuality
all individuals: 182
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15711
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2793
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5827
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4938
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15083
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4314
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.27e0

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.56e-1

QD
type: SiteQuality
SIO_000300: 1.167e1

FS
type: SiteQuality
SIO_000300: 4.99e-1

DP
type: SiteQuality
SIO_000300: 1.982997e6

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15080
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 216
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4937
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15553
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5824
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2793
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500555205426008e-5
allele num: 66642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.46e-1

DP
type: SiteQuality
SIO_000300: 1.981626e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

QD
type: SiteQuality
SIO_000300: 1.042e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.979e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.174e0

GenotypeQuality
all individuals: 4293
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4906
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15308
bin: 9.75e1
variant carriers: 368

GenotypeQuality
all individuals: 126
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3540
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2772
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7820
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.845548152634767e-4
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.036806635562468e-3
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 300
allele frequency: 4.502476361999099e-3
allele num: 66630
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.891844997108155e-4
allele num: 10374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 45
allele frequency: 6.80374962201391e-3
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

QD
type: SiteQuality
SIO_000300: 1.482e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 3.96e0

FS
type: SiteQuality
SIO_000300: 7.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

DP
type: SiteQuality
SIO_000300: 1.993966e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2785
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5817
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15260
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4308
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7838
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4925
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501140867058965e-5
allele num: 66616
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.924e1

VQSLOD
type: SiteQuality
SIO_000300: 3.75e-1

DP
type: SiteQuality
SIO_000300: 1.982947e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

FS
type: SiteQuality
SIO_000300: 1.122e0

MQRankSum
type: SiteQuality
SIO_000300: -7.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.368e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.967e0

QD
type: SiteQuality
SIO_000300: 1.353e1

GenotypeQuality
all individuals: 4294
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3559
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15213
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15135
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5801
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.504504504504505e-5
allele num: 66600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.94e0

QD
type: SiteQuality
SIO_000300: 1.452e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.4e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.82e-1

DP
type: SiteQuality
SIO_000300: 1.98433e6

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.03e-1

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14863
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7737
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4267
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3558
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5781
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50177209106746e-5
allele num: 66588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.63e-1

DP
type: SiteQuality
SIO_000300: 1.980245e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

MQRankSum
type: SiteQuality
SIO_000300: 8.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.28e-1

QD
type: SiteQuality
SIO_000300: 1.673e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e0

GenotypeQuality
all individuals: 14628
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4914
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2779
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7712
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4265
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3557
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15136
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 240
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5767
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66584
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.654373431164318e-5
allele num: 10358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.661e0

VQSLOD
type: SiteQuality
SIO_000300: -9.332e-1

DP
type: SiteQuality
SIO_000300: 1.978843e6

MQ
type: SiteQuality
SIO_000300: 5.398e1

FS
type: SiteQuality
SIO_000300: 3.783e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.803e0

QD
type: SiteQuality
SIO_000300: 8.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.128e0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15570
bin: 9.75e1
variant carriers: 565

GenotypeQuality
all individuals: 5701
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13962
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2746
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3515
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 243
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7538
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 491
allele frequency: 4.739382239382239e-2
allele num: 10360
num of homozygotes: 9

East Asian
type: Population
allele count: 45
allele frequency: 5.204718945176961e-3
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.311258278145695e-3
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.010157165609881e-5
allele num: 66554
num of homozygotes: 0

Latino
type: Population
allele count: 35
allele frequency: 3.025587828492393e-3
allele num: 11568
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.593e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e0

DP
type: SiteQuality
SIO_000300: 1.986079e6

MQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

GenotypeQuality
all individuals: 631
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15222
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 505
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2763
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13067
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5731
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4197
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3570
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66548
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

QD
type: SiteQuality
SIO_000300: 1.25e1

MQRankSum
type: SiteQuality
SIO_000300: 8.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.142e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

DP
type: SiteQuality
SIO_000300: 1.977378e6

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5697
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13055
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4169
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15218
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503895088278642e-5
allele num: 66494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.659969088098918e-5
allele num: 10352
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.244e0

QD
type: SiteQuality
SIO_000300: 1.158e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.04e-1

DP
type: SiteQuality
SIO_000300: 1.978949e6

MQRankSum
type: SiteQuality
SIO_000300: 5.92e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e0

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7262
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4142
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11907
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15311
bin: 9.75e1
variant carriers: 114

GenotypeQuality
all individuals: 2760
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5704
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4859
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.656237929702588e-5
allele num: 10356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730103806228374e-4
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 111
allele frequency: 1.284722222222222e-2
allele num: 8640
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

DP
type: SiteQuality
SIO_000300: 1.978647e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

QD
type: SiteQuality
SIO_000300: 1.469e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.94e0

GenotypeQuality
all individuals: 4859
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4142
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11907
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2760
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.469e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

DP
type: SiteQuality
SIO_000300: 1.978647e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
all individuals: 2775
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5774
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15260
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 583
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11211
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4913
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3586
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7117
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4146
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.669309611293753e-5
allele num: 10342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.129e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.633e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

VQSLOD
type: SiteQuality
SIO_000300: -3.291e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 1.979957e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.43e-1

GenotypeQuality
all individuals: 6426
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18402
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1886
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 966
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5678
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3476
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1203
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1501
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.09159e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

VQSLOD
type: SiteQuality
SIO_000300: 2.67e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 190
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5499
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3551
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23367
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3752
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5928
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 3205
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 7.25e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.875187518751875e-4
allele num: 26664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3368
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 6.393861892583121e-4
allele num: 4692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9486
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.106e0

MQ
type: SiteQuality
SIO_000300: 5.85e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.71e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.039e0

FS
type: SiteQuality
SIO_000300: 4.4279e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 6.26473e5

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.111e1

GenotypeQuality
all individuals: 72
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 216
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3049
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5901
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 347
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5585
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4773
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 9.75e1
variant carriers: 42

GenotypeQuality
all individuals: 868
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 210
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 92
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 755
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 9
allele frequency: 1.794974072596729e-3
allele num: 5014
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.617801047120419e-3
allele num: 382
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.117206982543641e-4
allele num: 9624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.18752246100769e-5
allele num: 27826
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.619172341540073e-4
allele num: 3818
num of homozygotes: 0

East Asian
type: Population
allele count: 32
allele frequency: 9.054895302773062e-3
allele num: 3534
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1710
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.46104e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.33e0

QD
type: SiteQuality
SIO_000300: 1.212e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 241
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2567
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26274
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5717
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1787
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6865
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 9.974067424695791e-5
allele num: 10026
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1922
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.462e0

VQSLOD
type: SiteQuality
SIO_000300: -5.3e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.16e-2

QD
type: SiteQuality
SIO_000300: 1.522e1

DP
type: SiteQuality
SIO_000300: 6.88014e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.357e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 4323
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8471
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27393
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5458
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 93
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5443
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2022
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.02e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 7.0671e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.234e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.92e0

VQSLOD
type: SiteQuality
SIO_000300: -7.193000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

GenotypeQuality
all individuals: 371
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1251
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10173
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27810
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3479
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5232
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2182
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.158759239370775e-5
allele num: 31658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4054
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4474
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.127e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.154e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.108e0

MQRankSum
type: SiteQuality
SIO_000300: 2.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 7.43142e5

GenotypeQuality
all individuals: 143
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2015
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27040
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13643
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4823
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4568
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.815949538184276e-5
allele num: 35512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.526e0

MQRankSum
type: SiteQuality
SIO_000300: 1.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.11521e5

MQ
type: SiteQuality
SIO_000300: 5.635e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

QD
type: SiteQuality
SIO_000300: 4.74e0

GenotypeQuality
all individuals: 164
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26808
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13829
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 92
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6012
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.801277382486414e-5
allele num: 35698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2666
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

QD
type: SiteQuality
SIO_000300: 1.321e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.407e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 8.172e5

GenotypeQuality
all individuals: 1797
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1447
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26047
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1038
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 376
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4678
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14273
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.084510078689232e-5
allele num: 37108
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.614465611882467e-4
allele num: 6194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4714
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.225e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

DP
type: SiteQuality
SIO_000300: 8.40208e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.539999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

GenotypeQuality
all individuals: 534
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14577
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1613
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4323
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4579
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24860
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5742
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38638
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.501955449753443e-5
allele num: 11762
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.541e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

VQSLOD
type: SiteQuality
SIO_000300: -1.489e0

DP
type: SiteQuality
SIO_000300: 8.66719e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.9e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.11e0

QD
type: SiteQuality
SIO_000300: 8.84e0

GenotypeQuality
all individuals: 963
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24814
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4523
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15431
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2114
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1539
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.561212990472288e-5
allele num: 39044
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2984
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.658e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

QD
type: SiteQuality
SIO_000300: 3.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.73343e5

GenotypeQuality
all individuals: 4159
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23823
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17167
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1574
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2194
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.447261514365425e-5
allele num: 40862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12026
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -5.983000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

DP
type: SiteQuality
SIO_000300: 9.01519e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

GenotypeQuality
all individuals: 1416
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1506
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3722
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1289
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 365
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3822
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 90
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 19935
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 293
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2162
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1287
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1025
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 8.25e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12426
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.663003663003663e-4
allele num: 5460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 5.695031085378008e-4
allele num: 42142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6786
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 7.582650894752805e-4
allele num: 6594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 11
allele frequency: 3.816793893129771e-3
allele num: 2882
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.58669e5

VQSLOD
type: SiteQuality
SIO_000300: -9.144e1

FS
type: SiteQuality
SIO_000300: 1.40743e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.12e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

QD
type: SiteQuality
SIO_000300: 8.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.824e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.03e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.29e-1

GenotypeQuality
all individuals: 469
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18736
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1456
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2369
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4033
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 476
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2007
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1519
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45062
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.907638779060572e-5
allele num: 12646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7146
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.41e-1

DP
type: SiteQuality
SIO_000300: 9.78901e5

FS
type: SiteQuality
SIO_000300: 5.444e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 9.609999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

GenotypeQuality
all individuals: 635
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 180
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2587
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1521
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13940
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31490
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53034
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6988
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13794
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.221896383186706e-4
allele num: 8184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9036
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.482e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-2

FS
type: SiteQuality
SIO_000300: 4.775e0

MQ
type: SiteQuality
SIO_000300: 5.878e1

MQRankSum
type: SiteQuality
SIO_000300: 5.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.788e-1

DP
type: SiteQuality
SIO_000300: 1.127585e6

GenotypeQuality
all individuals: 620
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13115
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 658
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 829
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32460
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2437
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 610
bin: 9.75e1
variant carriers: 236

GenotypeQuality
all individuals: 499
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1448
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 219
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 502
bin: 7.75e1
variant carriers: 5

African
type: Population
allele count: 232
allele frequency: 2.781107648046032e-2
allele num: 8342
num of homozygotes: 2

Other
type: Population
allele count: 1
allele frequency: 1.392757660167131e-3
allele num: 718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.713744568648568e-5
allele num: 53854
num of homozygotes: 0

Latino
type: Population
allele count: 14
allele frequency: 1.513186338089062e-3
allele num: 9252
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7092
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.184940364994971e-5
allele num: 13918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4554
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.194e1

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.71e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.036e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

DP
type: SiteQuality
SIO_000300: 1.147625e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

GenotypeQuality
all individuals: 69
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13115
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1448
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 32460
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2405
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 7
allele frequency: 5.029458255496479e-4
allele num: 13918
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53854
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.83e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

DP
type: SiteQuality
SIO_000300: 1.147625e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.036e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.71e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.194e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

GenotypeQuality
all individuals: 183
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1369
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12680
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2306
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3075
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14010
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.836412384765123e-5
allele num: 54454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.197e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.684e0

MQRankSum
type: SiteQuality
SIO_000300: -1.203e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.069e0

VQSLOD
type: SiteQuality
SIO_000300: 6.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 1.156486e6

GenotypeQuality
all individuals: 33861
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2200
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 131
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3114
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.053740779768177e-4
allele num: 9490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14126
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.361e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.245e1

MQRankSum
type: SiteQuality
SIO_000300: -2.023e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.197e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

DP
type: SiteQuality
SIO_000300: 1.171562e6

GenotypeQuality
all individuals: 99
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1273
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9887
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1705
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 37098
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4970
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9964
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.497604141163303e-5
allele num: 57182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.76e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.217e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e-2

DP
type: SiteQuality
SIO_000300: 1.220826e6

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

QD
type: SiteQuality
SIO_000300: 8.73e0

GenotypeQuality
all individuals: 133
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3588
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40852
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 579
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59002
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7816
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.233638597274961e-4
allele num: 8954
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 1.282e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

DP
type: SiteQuality
SIO_000300: 1.261645e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 377
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 635
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43390
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10768
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.573757559821194e-5
allele num: 15212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8104
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61132
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.781e0

MQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.933e1

QD
type: SiteQuality
SIO_000300: 8.529999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.492e0

DP
type: SiteQuality
SIO_000300: 1.308357e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
all individuals: 256
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5509
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44802
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4000
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8164
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.074113856068743e-4
allele num: 9310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61682
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

DP
type: SiteQuality
SIO_000300: 1.319933e6

QD
type: SiteQuality
SIO_000300: 1.109e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

FS
type: SiteQuality
SIO_000300: 2.877e0

VQSLOD
type: SiteQuality
SIO_000300: 6.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 167
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5323
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4026
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45115
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8184
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.068604402650139e-4
allele num: 9358
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.324552e6

QD
type: SiteQuality
SIO_000300: 1.444e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.714e0

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

GenotypeQuality
all individuals: 112
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45275
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 288
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61996
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.066325442525059e-4
allele num: 9378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10910
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.074e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.957e0

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-1

QD
type: SiteQuality
SIO_000300: 2.503e1

FS
type: SiteQuality
SIO_000300: 2.379e0

MQ
type: SiteQuality
SIO_000300: 5.89e1

DP
type: SiteQuality
SIO_000300: 1.328519e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e-1

GenotypeQuality
all individuals: 290
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4732
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4121
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46113
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10992
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.601537475976938e-5
allele num: 62440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9456
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

QD
type: SiteQuality
SIO_000300: 6.87e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

DP
type: SiteQuality
SIO_000300: 1.338217e6

FS
type: SiteQuality
SIO_000300: 1.345e0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 95
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4235
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.599712023038157e-4
allele num: 8334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.58574101677714e-5
allele num: 63062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11100
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.046682018002931e-4
allele num: 9554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15696
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 5.669e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.44e-1

QD
type: SiteQuality
SIO_000300: 9.16e0

DP
type: SiteQuality
SIO_000300: 1.353164e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 111
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4013
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47131
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4250
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 8.75e1
variant carriers: 0