14-24658034-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658034
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658034
    reference: chr 14
allele count: 1
allele frequency: 2.45122070791254e-5
allele num: 40796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196497
  ensembl protein: ENSP00000453825
  ensembl transcript: ENST00000560155
  gene symbol: IPO4
  hgvsc: ENST00000560155.1:c.-41C>T
  variant of: http://identifiers.org/hgnc/19426
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196497
  ensembl transcript: ENST00000559588
  gene symbol: IPO4
  hgvsc: ENST00000559588.1:n.42C>T
  variant of: http://identifiers.org/hgnc/19426
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196497
  ensembl protein: ENSP00000346453
  ensembl transcript: ENST00000354464
  gene symbol: IPO4
  hgvsc: ENST00000354464.6:c.-41C>T
  variant of: http://identifiers.org/hgnc/19426
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196497
  ensembl protein: ENSP00000453349
  ensembl transcript: ENST00000559253
  gene symbol: IPO4
  hgvsc: ENST00000559253.1:c.-41C>T
  variant of: http://identifiers.org/hgnc/19426
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.*587C>T
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11907
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24704
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16732
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3747
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1604
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1329
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12886
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3805
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3422
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25172
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

14-24658035-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658035
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658035
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 39544
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196497
  ensembl protein: ENSP00000453825
  ensembl transcript: ENST00000560155
  gene symbol: IPO4
  hgvsc: ENST00000560155.1:c.-42C>T
  variant of: http://identifiers.org/hgnc/19426
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196497
  ensembl transcript: ENST00000559588
  gene symbol: IPO4
  hgvsc: ENST00000559588.1:n.41C>T
  variant of: http://identifiers.org/hgnc/19426
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196497
  ensembl protein: ENSP00000346453
  ensembl transcript: ENST00000354464
  gene symbol: IPO4
  hgvsc: ENST00000354464.6:c.-42C>T
  variant of: http://identifiers.org/hgnc/19426
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.*586C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196497
  ensembl protein: ENSP00000453349
  ensembl transcript: ENST00000559253
  gene symbol: IPO4
  hgvsc: ENST00000559253.1:c.-42C>T
  variant of: http://identifiers.org/hgnc/19426
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11912
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25232
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4666
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12942
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3777
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23572
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1705
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4743
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

14-24658036-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658036
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658036
    reference: chr 14
allele count: 3
allele frequency: 7.570404764308065e-5
allele num: 39628
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196497
  ensembl protein: ENSP00000453825
  ensembl transcript: ENST00000560155
  gene symbol: IPO4
  hgvsc: ENST00000560155.1:c.-43C>T
  variant of: http://identifiers.org/hgnc/19426
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196497
  ensembl transcript: ENST00000559588
  gene symbol: IPO4
  hgvsc: ENST00000559588.1:n.40C>T
  variant of: http://identifiers.org/hgnc/19426
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.*585C>T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196497
  ensembl protein: ENSP00000346453
  ensembl transcript: ENST00000354464
  gene symbol: IPO4
  hgvsc: ENST00000354464.6:c.-43C>T
  variant of: http://identifiers.org/hgnc/19426
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000196497
  ensembl protein: ENSP00000453349
  ensembl transcript: ENST00000559253
  gene symbol: IPO4
  hgvsc: ENST00000559253.1:c.-43C>T
  variant of: http://identifiers.org/hgnc/19426
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11933
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16234
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25262
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4428
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13000
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4654
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23861
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

14-24658571-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658571
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658571
    reference: chr 14
allele count: 1
allele frequency: 8.885887433577992e-6
allele num: 112538
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.*50T>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.*50T>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.*50T>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.*50T>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.*50T>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*546T>A
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5383
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6361
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8614
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1941
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4096
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

14-24658575-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658575
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658575
    reference: chr 14
allele count: 1
allele frequency: 8.88083693007229e-6
allele num: 112602
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.*46C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.*46C>T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.*46C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.*46C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*542C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.*46C>T
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13880
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6357
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2359
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25429
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2998
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP

14-24658589-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658589
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658590
    reference: chr 14
allele count: 735
allele frequency: 6.481252865860111e-3
allele num: 113404
alternate allele: GA
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.*31dupT
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.*31dupT
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.*31dupT
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.*31dupT
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.*31dupT
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*527dupT
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 7.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5402
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 21617
  bin: 2.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 1.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 264
genotype depth: GenotypeDepth
  all individuals: 13901
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 2966
  bin: 8.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26094
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2992
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4083
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8645
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3248
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 16
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ

14-24658597-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658597
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658596
    reference: chr 14
allele count: 3
allele frequency: 2.629042152309175e-5
allele num: 114110
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.*23delC
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.*23delC
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.*23delC
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.*23delC
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.*23delC
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*519delC
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14071
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6021
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4144
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3052
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8778
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3333
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: AG
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD

14-24658598-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658598
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658598
    reference: chr 14
allele count: 1
allele frequency: 8.759635599159075e-6
allele num: 114160
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.*23C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.*23C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.*23C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.*23C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*519C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.*23C>T
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3052
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2989
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6019
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4145
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3318
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8779
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

14-24658607-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658607
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658607
    reference: chr 14
allele count: 1
allele frequency: 8.678446210990383e-6
allele num: 115228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.*14G>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*510G>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.*14G>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.*14G>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.*14G>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.*14G>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.*14G>C
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14091
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4148
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

14-24658608-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658608
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658608
    reference: chr 14
allele count: 1
allele frequency: 8.658608388459807e-6
allele num: 115492
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.*13A>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.*13A>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.*13A>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.*13A>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.*13A>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.*13A>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*509A>C
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22017
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6018
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3062
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1211
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

14-24658611-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658611
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658611
    reference: chr 14
allele count: 4
allele frequency: 3.444297105068283e-5
allele num: 116134
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.*10G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.*10G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*506G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.*10G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.*10G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.*10G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.*10G>A
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8854
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

14-24658619-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658619
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658619
    reference: chr 14
allele count: 1
allele frequency: 8.491703605577351e-6
allele num: 117762
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.*2T>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.*2T>C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.*2T>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*498T>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.*2T>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.*2T>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.*2T>C
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29443
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

14-24658642-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658642
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658642
    reference: chr 14
allele count: 272
allele frequency: 2.255015751948267e-3
allele num: 120620
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1539T>C
  hgvsp: ENST00000524835.1:c.1539T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2427T>C
  hgvsp: ENST00000530611.1:c.2427T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*475T>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2427T>C
  hgvsp: ENST00000556387.1:c.2427T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1800T>C
  hgvsp: ENST00000261789.4:c.1800T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1749T>C
  hgvsp: ENST00000528669.1:c.1749T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.410T>C
  hgvsp: ENST00000561419.1:c.410T>C(p.%3D)
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10447
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14213
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 9.75e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 22949
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4200
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3014
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr809Tyr
num of homozygotes: 1
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

14-24658645-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658645
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658645
    reference: chr 14
allele count: 1
allele frequency: 8.282533792737874e-6
allele num: 120736
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.407C>T
  hgvsp: ENST00000561419.1:c.407C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*472C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2424C>T
  hgvsp: ENST00000556387.1:c.2424C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1536C>T
  hgvsp: ENST00000524835.1:c.1536C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2424C>T
  hgvsp: ENST00000530611.1:c.2424C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1797C>T
  hgvsp: ENST00000261789.4:c.1797C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1746C>T
  hgvsp: ENST00000528669.1:c.1746C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4217
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5811
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31502
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile808Ile
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/14-24658651-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658651
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658651
    reference: chr 14
allele count: 1
allele frequency: 8.264462809917356e-6
allele num: 121000
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*466G>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1740G>T
  hgvsp: ENST00000528669.1:c.1740G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.401G>T
  hgvsp: ENST00000561419.1:c.401G>T(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1791G>T
  hgvsp: ENST00000261789.4:c.1791G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1530G>T
  hgvsp: ENST00000524835.1:c.1530G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2418G>T
  hgvsp: ENST00000556387.1:c.2418G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2418G>T
  hgvsp: ENST00000530611.1:c.2418G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14305
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg806Arg
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

14-24658652-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658652
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658652
    reference: chr 14
allele count: 3
allele frequency: 2.478191911181602e-5
allele num: 121056
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2417G>A
  hgvsp: ENSP00000433967.1:p.Arg806Gln
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.400G>A
  hgvsp: ENSP00000454374.1:p.Arg134Gln
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1790G>A
  hgvsp: ENSP00000261789.4:p.Arg597Gln
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*465G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1529G>A
  hgvsp: ENSP00000434387.1:p.Arg510Gln
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1739G>A
  hgvsp: ENSP00000432997.1:p.Arg580Gln
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2417G>A
  hgvsp: ENSP00000451949.1:p.Arg806Gln
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5508
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1834
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9184
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg806Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/14-24658655-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658655
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658655
    reference: chr 14
allele count: 2
allele frequency: 1.650546330835507e-5
allele num: 121172
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1787T>G
  hgvsp: ENSP00000261789.4:p.Ile596Ser
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*462T>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2414T>G
  hgvsp: ENSP00000433967.1:p.Ile805Ser
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1736T>G
  hgvsp: ENSP00000432997.1:p.Ile579Ser
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.397T>G
  hgvsp: ENSP00000454374.1:p.Ile133Ser
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2414T>G
  hgvsp: ENSP00000451949.1:p.Ile805Ser
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1526T>G
  hgvsp: ENSP00000434387.1:p.Ile509Ser
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4220
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31880
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3026
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile805Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD

14-24658655-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658655
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658655
    reference: chr 14
allele count: 1
allele frequency: 8.252731654177533e-6
allele num: 121172
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*462T>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1787T>C
  hgvsp: ENSP00000261789.4:p.Ile596Thr
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1736T>C
  hgvsp: ENSP00000432997.1:p.Ile579Thr
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.397T>C
  hgvsp: ENSP00000454374.1:p.Ile133Thr
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1526T>C
  hgvsp: ENSP00000434387.1:p.Ile509Thr
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2414T>C
  hgvsp: ENSP00000451949.1:p.Ile805Thr
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2414T>C
  hgvsp: ENSP00000433967.1:p.Ile805Thr
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5808
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9226
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3150
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile805Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

14-24658666-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658666
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658666
    reference: chr 14
allele count: 36
allele frequency: 2.967652586803838e-4
allele num: 121308
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2403C>G
  hgvsp: ENST00000530611.1:c.2403C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1725C>G
  hgvsp: ENST00000528669.1:c.1725C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*451C>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1776C>G
  hgvsp: ENST00000261789.4:c.1776C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2403C>G
  hgvsp: ENST00000556387.1:c.2403C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.386C>G
  hgvsp: ENST00000561419.1:c.386C>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1515C>G
  hgvsp: ENST00000524835.1:c.1515C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10580
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5811
  bin: 9.75e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31974
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4226
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser801Ser
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP

14-24658687-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658687
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658687
    reference: chr 14
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2382C>A
  hgvsp: ENST00000556387.1:c.2382C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1755C>A
  hgvsp: ENST00000261789.4:c.1755C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*430C>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1704C>A
  hgvsp: ENST00000528669.1:c.1704C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.365C>A
  hgvsp: ENST00000561419.1:c.365C>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1494C>A
  hgvsp: ENST00000524835.1:c.1494C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2382C>A
  hgvsp: ENST00000530611.1:c.2382C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4224
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3027
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly794Gly
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

14-24658705-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658705
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658705
    reference: chr 14
allele count: 2
allele frequency: 1.647609318878308e-5
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2364C>T
  hgvsp: ENST00000530611.1:c.2364C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1476C>T
  hgvsp: ENST00000524835.1:c.1476C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1686C>T
  hgvsp: ENST00000528669.1:c.1686C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1737C>T
  hgvsp: ENST00000261789.4:c.1737C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2364C>T
  hgvsp: ENST00000556387.1:c.2364C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.347C>T
  hgvsp: ENST00000561419.1:c.347C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*412C>T
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5497
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5778
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9273
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3166
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val788Val
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ

14-24658717-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658717
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658717
    reference: chr 14
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.335C>T
  hgvsp: ENST00000561419.1:c.335C>T(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2352C>T
  hgvsp: ENST00000530611.1:c.2352C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1464C>T
  hgvsp: ENST00000524835.1:c.1464C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1674C>T
  hgvsp: ENST00000528669.1:c.1674C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1725C>T
  hgvsp: ENST00000261789.4:c.1725C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2352C>T
  hgvsp: ENST00000556387.1:c.2352C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*400C>T
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4223
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9266
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3022
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu784Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

14-24658724-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658724
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658724
    reference: chr 14
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*393C>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2345C>G
  hgvsp: ENSP00000451949.1:p.Ser782Cys
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2345C>G
  hgvsp: ENSP00000433967.1:p.Ser782Cys
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.328C>G
  hgvsp: ENSP00000454374.1:p.Ser110Cys
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1667C>G
  hgvsp: ENSP00000432997.1:p.Ser556Cys
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1718C>G
  hgvsp: ENSP00000261789.4:p.Ser573Cys
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1457C>G
  hgvsp: ENSP00000434387.1:p.Ser486Cys
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14350
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9269
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser782Cys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

14-24658726-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658726
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658726
    reference: chr 14
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.326C>T
  hgvsp: ENST00000561419.1:c.326C>T(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1716C>T
  hgvsp: ENST00000261789.4:c.1716C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*391C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1455C>T
  hgvsp: ENST00000524835.1:c.1455C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2343C>T
  hgvsp: ENST00000556387.1:c.2343C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2343C>T
  hgvsp: ENST00000530611.1:c.2343C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1665C>T
  hgvsp: ENST00000528669.1:c.1665C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14351
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5772
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9270
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Tyr781Tyr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum

14-24658732-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658732
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658732
    reference: chr 14
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.320C>T
  hgvsp: ENST00000561419.1:c.320C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*385C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1449C>T
  hgvsp: ENST00000524835.1:c.1449C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2337C>T
  hgvsp: ENST00000530611.1:c.2337C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1659C>T
  hgvsp: ENST00000528669.1:c.1659C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1710C>T
  hgvsp: ENST00000261789.4:c.1710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2337C>T
  hgvsp: ENST00000556387.1:c.2337C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9273
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4224
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Phe779Phe
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

14-24658738-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658738
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658738
    reference: chr 14
allele count: 14
allele frequency: 1.153174524727357e-4
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*379G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2331G>A
  hgvsp: ENST00000530611.1:c.2331G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1443G>A
  hgvsp: ENST00000524835.1:c.1443G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1653G>A
  hgvsp: ENST00000528669.1:c.1653G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.314G>A
  hgvsp: ENST00000561419.1:c.314G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2331G>A
  hgvsp: ENST00000556387.1:c.2331G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1704G>A
  hgvsp: ENST00000261789.4:c.1704G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32147
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3171
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu777Glu
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

14-24658741-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658741
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658741
    reference: chr 14
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2328A>G
  hgvsp: ENST00000556387.1:c.2328A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2328A>G
  hgvsp: ENST00000530611.1:c.2328A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1650A>G
  hgvsp: ENST00000528669.1:c.1650A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*376A>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.311A>G
  hgvsp: ENST00000561419.1:c.311A>G(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1701A>G
  hgvsp: ENST00000261789.4:c.1701A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1440A>G
  hgvsp: ENST00000524835.1:c.1440A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3174
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9272
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4227
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val776Val
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

14-24658760-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658760
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658760
    reference: chr 14
allele count: 2
allele frequency: 1.647582173160887e-5
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1421C>T
  hgvsp: ENSP00000434387.1:p.Ser474Phe
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2309C>T
  hgvsp: ENSP00000451949.1:p.Ser770Phe
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2309C>T
  hgvsp: ENSP00000433967.1:p.Ser770Phe
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1631C>T
  hgvsp: ENSP00000432997.1:p.Ser544Phe
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.292C>T
  hgvsp: ENSP00000454374.1:p.Ser98Phe
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1682C>T
  hgvsp: ENSP00000261789.4:p.Ser561Phe
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*357C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.384C>T
  hgvsp: ENST00000532632.1:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32136
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9272
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser98Phe
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum

14-24658766-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658766
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658766
    reference: chr 14
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.378A>G
  hgvsp: ENST00000532632.1:c.378A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2303A>G
  hgvsp: ENSP00000451949.1:p.Asn768Ser
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1415A>G
  hgvsp: ENSP00000434387.1:p.Asn472Ser
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1625A>G
  hgvsp: ENSP00000432997.1:p.Asn542Ser
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2303A>G
  hgvsp: ENSP00000433967.1:p.Asn768Ser
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*351A>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.286A>G
  hgvsp: ENSP00000454374.1:p.Asn96Ser
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1676A>G
  hgvsp: ENSP00000261789.4:p.Asn559Ser
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32115
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4232
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3167
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn96Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

14-24658773-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658773
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658773
    reference: chr 14
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1408C>T
  hgvsp: ENSP00000434387.1:p.Arg470Cys
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.371C>T
  hgvsp: ENSP00000436486.1:p.Ala124Val
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2296C>T
  hgvsp: ENSP00000451949.1:p.Arg766Cys
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2296C>T
  hgvsp: ENSP00000433967.1:p.Arg766Cys
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1618C>T
  hgvsp: ENSP00000432997.1:p.Arg540Cys
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1669C>T
  hgvsp: ENSP00000261789.4:p.Arg557Cys
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*344C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.279C>T
  hgvsp: ENSP00000454374.1:p.Arg94Cys
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3020
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg94Cys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

14-24658776-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658776
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658776
    reference: chr 14
allele count: 38
allele frequency: 3.130664030318009e-4
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2293C>T
  hgvsp: ENSP00000433967.1:p.Arg765Trp
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1666C>T
  hgvsp: ENSP00000261789.4:p.Arg556Trp
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1615C>T
  hgvsp: ENSP00000432997.1:p.Arg539Trp
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.368C>T
  hgvsp: ENSP00000436486.1:p.Pro123Leu
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.276C>T
  hgvsp: ENSP00000454374.1:p.Arg93Trp
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1405C>T
  hgvsp: ENSP00000434387.1:p.Arg469Trp
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2293C>T
  hgvsp: ENSP00000451949.1:p.Arg765Trp
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*341C>T
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5751
  bin: 9.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3021
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg93Trp
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

14-24658784-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658784
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658784
    reference: chr 14
allele count: 2
allele frequency: 1.647772211969417e-5
allele num: 121376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1397A>G
  hgvsp: ENSP00000434387.1:p.Tyr466Cys
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2285A>G
  hgvsp: ENSP00000451949.1:p.Tyr762Cys
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2285A>G
  hgvsp: ENSP00000433967.1:p.Tyr762Cys
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.360A>G
  hgvsp: ENST00000532632.1:c.360A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.268A>G
  hgvsp: ENSP00000454374.1:p.Tyr90Cys
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1607A>G
  hgvsp: ENSP00000432997.1:p.Tyr536Cys
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1658A>G
  hgvsp: ENSP00000261789.4:p.Tyr553Cys
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*333A>G
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9269
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5718
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3020
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Tyr90Cys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

14-24658796-T-TAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658796
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658798
    reference: chr 14
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: TAG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1593_1594dupCT
  hgvsp: ENSP00000432997.1:p.Tyr532SerfsTer20
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1644_1645dupCT
  hgvsp: ENSP00000261789.4:p.Tyr549SerfsTer20
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2271_2272dupCT
  hgvsp: ENSP00000451949.1:p.Tyr758SerfsTer20
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.254_255dupCT
  hgvsp: ENSP00000454374.1:p.Tyr86SerfsTer20
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1383_1384dupCT
  hgvsp: ENSP00000434387.1:p.Tyr462SerfsTer20
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.346_347dupCT
  hgvsp: ENSP00000436486.1:p.Leu117TyrfsTer?
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*319_*320dupCT
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2271_2272dupCT
  hgvsp: ENSP00000433967.1:p.Tyr758SerfsTer20
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1211
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5716
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31977
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4223
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Tyr86SerfsTer20
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

14-24658815-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658815
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658815
    reference: chr 14
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2254G>A
  hgvsp: ENSP00000433967.1:p.Gly752Ser
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*302G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1366G>A
  hgvsp: ENSP00000434387.1:p.Gly456Ser
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1576G>A
  hgvsp: ENSP00000432997.1:p.Gly526Ser
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.329G>A
  hgvsp: ENSP00000436486.1:p.Arg110Gln
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1627G>A
  hgvsp: ENSP00000261789.4:p.Gly543Ser
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2254G>A
  hgvsp: ENSP00000451949.1:p.Gly752Ser
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.237G>A
  hgvsp: ENSP00000454374.1:p.Gly80Ser
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1831
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31925
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3146
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly80Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

14-24658816-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658816
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658816
    reference: chr 14
allele count: 7
allele frequency: 5.768248265405343e-5
allele num: 121354
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2253C>T
  hgvsp: ENST00000530611.1:c.2253C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1575C>T
  hgvsp: ENST00000528669.1:c.1575C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.236C>T
  hgvsp: ENST00000561419.1:c.236C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2253C>T
  hgvsp: ENST00000556387.1:c.2253C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1365C>T
  hgvsp: ENST00000524835.1:c.1365C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.328C>T
  hgvsp: ENSP00000436486.1:p.Arg110Trp
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*301C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1626C>T
  hgvsp: ENST00000261789.4:c.1626C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5714
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1831
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg110Trp
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/14-24658834-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658834
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658834
    reference: chr 14
allele count: 2
allele frequency: 1.648016612007449e-5
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.310G>T
  hgvsp: ENSP00000436486.1:p.Ala104Ser
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1557G>T
  hgvsp: ENST00000528669.1:c.1557G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2235G>T
  hgvsp: ENST00000556387.1:c.2235G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.218G>T
  hgvsp: ENST00000561419.1:c.218G>T(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1608G>T
  hgvsp: ENST00000261789.4:c.1608G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2235G>T
  hgvsp: ENST00000530611.1:c.2235G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*283G>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1347G>T
  hgvsp: ENST00000524835.1:c.1347G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5711
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala104Ser
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/14-24658841-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658841
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658841
    reference: chr 14
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1550G>T
  hgvsp: ENSP00000432997.1:p.Arg517Leu
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1601G>T
  hgvsp: ENSP00000261789.4:p.Arg534Leu
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2228G>T
  hgvsp: ENSP00000433967.1:p.Arg743Leu
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2228G>T
  hgvsp: ENSP00000451949.1:p.Arg743Leu
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1340G>T
  hgvsp: ENSP00000434387.1:p.Arg447Leu
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*276G>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.303G>T
  hgvsp: ENST00000532632.1:c.303G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.211G>T
  hgvsp: ENSP00000454374.1:p.Arg71Leu
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10417
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg71Leu
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

14-24658841-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658841
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658841
    reference: chr 14
allele count: 6
allele frequency: 4.944294284395807e-5
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1601G>A
  hgvsp: ENSP00000261789.4:p.Arg534Gln
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2228G>A
  hgvsp: ENSP00000433967.1:p.Arg743Gln
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.211G>A
  hgvsp: ENSP00000454374.1:p.Arg71Gln
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1340G>A
  hgvsp: ENSP00000434387.1:p.Arg447Gln
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*276G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1550G>A
  hgvsp: ENSP00000432997.1:p.Arg517Gln
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.303G>A
  hgvsp: ENST00000532632.1:c.303G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2228G>A
  hgvsp: ENSP00000451949.1:p.Arg743Gln
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10417
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg71Gln
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

14-24658842-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658842
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658842
    reference: chr 14
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2227C>T
  hgvsp: ENSP00000451949.1:p.Arg743Ter
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*275C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1600C>T
  hgvsp: ENSP00000261789.4:p.Arg534Ter
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2227C>T
  hgvsp: ENSP00000433967.1:p.Arg743Ter
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.210C>T
  hgvsp: ENSP00000454374.1:p.Arg71Ter
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.302C>T
  hgvsp: ENSP00000436486.1:p.Ala101Val
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1549C>T
  hgvsp: ENSP00000432997.1:p.Arg517Ter
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1339C>T
  hgvsp: ENSP00000434387.1:p.Arg447Ter
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31955
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg71Ter
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

14-24658853-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658853
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658853
    reference: chr 14
allele count: 2
allele frequency: 1.648098094798602e-5
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.199G>A
  hgvsp: ENSP00000454374.1:p.Arg67His
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2216G>A
  hgvsp: ENSP00000433967.1:p.Arg739His
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*264G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1538G>A
  hgvsp: ENSP00000432997.1:p.Arg513His
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2216G>A
  hgvsp: ENSP00000451949.1:p.Arg739His
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1589G>A
  hgvsp: ENSP00000261789.4:p.Arg530His
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1328G>A
  hgvsp: ENSP00000434387.1:p.Arg443His
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.291G>A
  hgvsp: ENST00000532632.1:c.291G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5704
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3015
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg67His
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

14-24658854-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658854
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658854
    reference: chr 14
allele count: 2
allele frequency: 1.648098094798602e-5
allele num: 121352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1327C>T
  hgvsp: ENSP00000434387.1:p.Arg443Cys
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1588C>T
  hgvsp: ENSP00000261789.4:p.Arg530Cys
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.198C>T
  hgvsp: ENSP00000454374.1:p.Arg67Cys
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1537C>T
  hgvsp: ENSP00000432997.1:p.Arg513Cys
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.290C>T
  hgvsp: ENSP00000436486.1:p.Pro97Leu
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*263C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2215C>T
  hgvsp: ENSP00000451949.1:p.Arg739Cys
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2215C>T
  hgvsp: ENSP00000433967.1:p.Arg739Cys
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg67Cys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

14-24658872-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658872
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658872
    reference: chr 14
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1519T>A
  hgvsp: ENSP00000432997.1:p.Leu507Met
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.180T>A
  hgvsp: ENSP00000454374.1:p.Leu61Met
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.272T>A
  hgvsp: ENSP00000436486.1:p.Val91Asp
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1309T>A
  hgvsp: ENSP00000434387.1:p.Leu437Met
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1570T>A
  hgvsp: ENSP00000261789.4:p.Leu524Met
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2197T>A
  hgvsp: ENSP00000451949.1:p.Leu733Met
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2197T>A
  hgvsp: ENSP00000433967.1:p.Leu733Met
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*245T>A
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4217
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu61Met
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

14-24658882-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658882
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658882
    reference: chr 14
allele count: 3
allele frequency: 2.472147142197904e-5
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.262C>A
  hgvsp: ENSP00000436486.1:p.Leu88Ile
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1299C>A
  hgvsp: ENST00000524835.1:c.1299C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.170C>A
  hgvsp: ENST00000561419.1:c.170C>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2187C>A
  hgvsp: ENST00000556387.1:c.2187C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*235C>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1509C>A
  hgvsp: ENST00000528669.1:c.1509C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2187C>A
  hgvsp: ENST00000530611.1:c.2187C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1560C>A
  hgvsp: ENST00000261789.4:c.1560C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23644
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4219
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3018
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9270
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu88Ile
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

14-24658906-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658906
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658906
    reference: chr 14
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1275G>C
  hgvsp: ENST00000524835.1:c.1275G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1536G>C
  hgvsp: ENST00000261789.4:c.1536G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2163G>C
  hgvsp: ENST00000556387.1:c.2163G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.146G>C
  hgvsp: ENST00000561419.1:c.146G>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.238G>C
  hgvsp: ENSP00000436486.1:p.Gly80Arg
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2163G>C
  hgvsp: ENST00000530611.1:c.2163G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*211G>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1485G>C
  hgvsp: ENST00000528669.1:c.1485G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9256
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5696
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3015
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly80Arg
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

14-24658909-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658909
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658909
    reference: chr 14
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1482G>A
  hgvsp: ENST00000528669.1:c.1482G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.235G>A
  hgvsp: ENSP00000436486.1:p.Gly79Arg
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1533G>A
  hgvsp: ENST00000261789.4:c.1533G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1272G>A
  hgvsp: ENST00000524835.1:c.1272G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.143G>A
  hgvsp: ENST00000561419.1:c.143G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*208G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2160G>A
  hgvsp: ENST00000530611.1:c.2160G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2160G>A
  hgvsp: ENST00000556387.1:c.2160G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1831
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly79Arg
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP

14-24658910-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658910
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658910
    reference: chr 14
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.234T>C
  hgvsp: ENST00000532632.1:c.234T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1481T>C
  hgvsp: ENSP00000432997.1:p.Val494Ala
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2159T>C
  hgvsp: ENSP00000433967.1:p.Val720Ala
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1532T>C
  hgvsp: ENSP00000261789.4:p.Val511Ala
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1271T>C
  hgvsp: ENSP00000434387.1:p.Val424Ala
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.142T>C
  hgvsp: ENSP00000454374.1:p.Val48Ala
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2159T>C
  hgvsp: ENSP00000451949.1:p.Val720Ala
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*207T>C
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14335
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4216
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32145
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9254
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val48Ala
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD

14-24658911-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658911
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658911
    reference: chr 14
allele count: 2
allele frequency: 1.648777431534517e-5
allele num: 121302
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.141G>A
  hgvsp: ENSP00000454374.1:p.Val48Met
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2158G>A
  hgvsp: ENSP00000433967.1:p.Val720Met
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1270G>A
  hgvsp: ENSP00000434387.1:p.Val424Met
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1531G>A
  hgvsp: ENSP00000261789.4:p.Val511Met
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*206G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2158G>A
  hgvsp: ENSP00000451949.1:p.Val720Met
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.233G>A
  hgvsp: ENSP00000436486.1:p.Cys78Tyr
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1480G>A
  hgvsp: ENSP00000432997.1:p.Val494Met
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32151
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val48Met
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

14-24658927-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658927
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658927
    reference: chr 14
allele count: 23
allele frequency: 1.897564517193585e-4
allele num: 121208
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2142C>T
  hgvsp: ENST00000530611.1:c.2142C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.125C>T
  hgvsp: ENST00000561419.1:c.125C>T(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1515C>T
  hgvsp: ENST00000261789.4:c.1515C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.217C>T
  hgvsp: ENSP00000436486.1:p.Arg73Cys
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1254C>T
  hgvsp: ENST00000524835.1:c.1254C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1464C>T
  hgvsp: ENST00000528669.1:c.1464C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2142C>T
  hgvsp: ENST00000556387.1:c.2142C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*190C>T
  variant of: http://identifiers.org/hgnc/11864
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3132
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg73Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

14-24658938-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658938
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658938
    reference: chr 14
allele count: 1
allele frequency: 8.254775387561705e-6
allele num: 121142
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1504T>C
  hgvsp: ENSP00000261789.4:p.Phe502Leu
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2131T>C
  hgvsp: ENSP00000433967.1:p.Phe711Leu
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1243T>C
  hgvsp: ENSP00000434387.1:p.Phe415Leu
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1453T>C
  hgvsp: ENSP00000432997.1:p.Phe485Leu
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2131T>C
  hgvsp: ENSP00000451949.1:p.Phe711Leu
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*179T>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.206T>C
  hgvsp: ENSP00000436486.1:p.Leu69Pro
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.114T>C
  hgvsp: ENSP00000454374.1:p.Phe39Leu
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3010
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9244
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3133
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4215
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Phe39Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD

14-24658947-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658947
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658947
    reference: chr 14
allele count: 1
allele frequency: 8.261322141995606e-6
allele num: 121046
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2122G>A
  hgvsp: ENSP00000433967.1:p.Gly708Ser
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1444G>A
  hgvsp: ENSP00000432997.1:p.Gly482Ser
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1495G>A
  hgvsp: ENSP00000261789.4:p.Gly499Ser
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.105G>A
  hgvsp: ENSP00000454374.1:p.Gly36Ser
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.197G>A
  hgvsp: ENSP00000436486.1:p.Arg66Gln
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2122G>A
  hgvsp: ENSP00000451949.1:p.Gly708Ser
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1234G>A
  hgvsp: ENSP00000434387.1:p.Gly412Ser
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*170G>A
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3007
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31964
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1831
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly36Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ

14-24658948-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658948
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658948
    reference: chr 14
allele count: 1
allele frequency: 8.26541913940456e-6
allele num: 120986
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2121C>T
  hgvsp: ENST00000556387.1:c.2121C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2121C>T
  hgvsp: ENST00000530611.1:c.2121C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1494C>T
  hgvsp: ENST00000261789.4:c.1494C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.196C>T
  hgvsp: ENSP00000436486.1:p.Arg66Trp
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1443C>T
  hgvsp: ENST00000528669.1:c.1443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1233C>T
  hgvsp: ENST00000524835.1:c.1233C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*169C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.104C>T
  hgvsp: ENST00000561419.1:c.104C>T(p.%3D)
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9223
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4209
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg66Trp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum

14-24658956-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658956
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658956
    reference: chr 14
allele count: 1
allele frequency: 8.272393368849475e-6
allele num: 120884
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*161A>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.96A>G
  hgvsp: ENSP00000454374.1:p.Thr33Ala
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1486A>G
  hgvsp: ENSP00000261789.4:p.Thr496Ala
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2113A>G
  hgvsp: ENSP00000451949.1:p.Thr705Ala
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2113A>G
  hgvsp: ENSP00000433967.1:p.Thr705Ala
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1225A>G
  hgvsp: ENSP00000434387.1:p.Thr409Ala
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.188A>G
  hgvsp: ENSP00000436486.1:p.His63Arg
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1435A>G
  hgvsp: ENSP00000432997.1:p.Thr479Ala
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4209
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3120
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr33Ala
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

14-24658969-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658969
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658969
    reference: chr 14
allele count: 1
allele frequency: 8.304820117596252e-6
allele num: 120412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.83T>A
  hgvsp: ENST00000561419.1:c.83T>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*148T>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2100T>A
  hgvsp: ENST00000530611.1:c.2100T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1212T>A
  hgvsp: ENST00000524835.1:c.1212T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2100T>A
  hgvsp: ENST00000556387.1:c.2100T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.175T>A
  hgvsp: ENSP00000436486.1:p.Ser59Thr
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1473T>A
  hgvsp: ENST00000261789.4:c.1473T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1422T>A
  hgvsp: ENST00000528669.1:c.1422T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9142
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3005
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5663
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31315
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser59Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum

14-24658976-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658976
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658976
    reference: chr 14
allele count: 1
allele frequency: 8.328197611472925e-6
allele num: 120074
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.76T>C
  hgvsp: ENSP00000454374.1:p.Val26Ala
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*141T>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2093T>C
  hgvsp: ENSP00000451949.1:p.Val698Ala
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1415T>C
  hgvsp: ENSP00000432997.1:p.Val472Ala
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.168T>C
  hgvsp: ENST00000532632.1:c.168T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2093T>C
  hgvsp: ENSP00000433967.1:p.Val698Ala
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1205T>C
  hgvsp: ENSP00000434387.1:p.Val402Ala
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1466T>C
  hgvsp: ENSP00000261789.4:p.Val489Ala
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3111
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30938
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val26Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

14-24658995-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658995
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658995
    reference: chr 14
allele count: 3
allele frequency: 2.533912191496191e-5
allele num: 118394
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1447T>C
  hgvsp: ENSP00000261789.4:p.Tyr483His
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1186T>C
  hgvsp: ENSP00000434387.1:p.Tyr396His
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.57T>C
  hgvsp: ENSP00000454374.1:p.Tyr20His
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.149T>C
  hgvsp: ENSP00000436486.1:p.Val50Ala
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1396T>C
  hgvsp: ENSP00000432997.1:p.Tyr466His
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*122T>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2074T>C
  hgvsp: ENSP00000433967.1:p.Tyr692His
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2074T>C
  hgvsp: ENSP00000451949.1:p.Tyr692His
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2542
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29108
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Tyr20His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

14-24658996-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658996
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658996
    reference: chr 14
allele count: 1
allele frequency: 8.451799388089724e-6
allele num: 118318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.148G>A
  hgvsp: ENSP00000436486.1:p.Val50Ile
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2073G>A
  hgvsp: ENST00000556387.1:c.2073G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1185G>A
  hgvsp: ENST00000524835.1:c.1185G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1395G>A
  hgvsp: ENST00000528669.1:c.1395G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1446G>A
  hgvsp: ENST00000261789.4:c.1446G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2073G>A
  hgvsp: ENST00000530611.1:c.2073G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*121G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.56G>A
  hgvsp: ENST00000561419.1:c.56G>A(p.%3D)
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29122
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2565
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val50Ile
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

14-24658998-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24658998
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24658998
    reference: chr 14
allele count: 1
allele frequency: 8.463673911571535e-6
allele num: 118152
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.146C>G
  hgvsp: ENSP00000436486.1:p.Ala49Gly
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.54C>G
  hgvsp: ENSP00000454374.1:p.Leu19Val
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2071C>G
  hgvsp: ENSP00000433967.1:p.Leu691Val
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1183C>G
  hgvsp: ENSP00000434387.1:p.Leu395Val
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1444C>G
  hgvsp: ENSP00000261789.4:p.Leu482Val
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2071C>G
  hgvsp: ENSP00000451949.1:p.Leu691Val
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1393C>G
  hgvsp: ENSP00000432997.1:p.Leu465Val
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*119C>G
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3066
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu19Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

14-24659010-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24659010
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24659010
    reference: chr 14
allele count: 1
allele frequency: 8.576623554838932e-6
allele num: 116596
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1171A>G
  hgvsp: ENSP00000434387.1:p.Ile391Val
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.134A>G
  hgvsp: ENSP00000436486.1:p.His45Arg
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2059A>G
  hgvsp: ENSP00000433967.1:p.Ile687Val
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1432A>G
  hgvsp: ENSP00000261789.4:p.Ile478Val
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*107A>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.42A>G
  hgvsp: ENSP00000454374.1:p.Ile15Val
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1381A>G
  hgvsp: ENSP00000432997.1:p.Ile461Val
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2059A>G
  hgvsp: ENSP00000451949.1:p.Ile687Val
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27654
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2985
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile15Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

14-24659011-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24659011
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24659011
    reference: chr 14
allele count: 1
allele frequency: 8.583543630152271e-6
allele num: 116502
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1170C>T
  hgvsp: ENST00000524835.1:c.1170C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1431C>T
  hgvsp: ENST00000261789.4:c.1431C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.133C>T
  hgvsp: ENSP00000436486.1:p.His45Tyr
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2058C>T
  hgvsp: ENST00000530611.1:c.2058C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2058C>T
  hgvsp: ENST00000556387.1:c.2058C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1380C>T
  hgvsp: ENST00000528669.1:c.1380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*106C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.41C>T
  hgvsp: ENST00000561419.1:c.41C>T(p.%3D)
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4145
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His45Tyr
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ

14-24659018-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24659018
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24659018
    reference: chr 14
allele count: 2
allele frequency: 1.73178165696869e-5
allele num: 115488
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1428-4A>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1377-4A>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*103-4A>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.38-4A>G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2055-4A>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2055-4A>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.130-4A>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1167-4A>G
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4604
  bin: 2.25e1
  variant carriers: 0
hgvs: c.38-4A>G
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

14-24659018-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24659018
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24659018
    reference: chr 14
allele count: 1
allele frequency: 8.658908284843448e-6
allele num: 115488
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.38-4A>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1377-4A>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1167-4A>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1428-4A>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*103-4A>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.130-4A>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2055-4A>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2055-4A>C
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
hgvs: c.38-4A>C
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

14-24659022-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24659022
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24659022
    reference: chr 14
allele count: 1
allele frequency: 8.715052638917939e-6
allele num: 114744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1377-8C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*103-8C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.38-8C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1167-8C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1428-8C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2055-8C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.130-8C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2055-8C>T
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6035
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26282
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4113
  bin: 7.75e1
  variant carriers: 0
hgvs: c.38-8C>T
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP

14-24659027-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24659027
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24659027
    reference: chr 14
allele count: 6
allele frequency: 5.246681473967715e-5
allele num: 114358
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1428-13C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.130-13C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2055-13C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1167-13C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.38-13C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1377-13C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*103-13C>T
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2055-13C>T
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21837
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5384
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8561
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4794
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

14-24659036-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24659036
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24659036
    reference: chr 14
allele count: 1
allele frequency: 8.864462370357237e-6
allele num: 112810
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.38-22G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1428-22G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*103-22G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1377-22G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2055-22G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2055-22G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1167-22G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.130-22G>A
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4783
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5603
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24478
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/14-24659037-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24659037
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24659037
    reference: chr 14
allele count: 1
allele frequency: 8.879575201122378e-6
allele num: 112618
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2055-23T>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.38-23T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.130-23T>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1428-23T>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2055-23T>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*103-23T>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1167-23T>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1377-23T>G
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4743
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23862
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

14-24659042-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24659042
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24659042
    reference: chr 14
allele count: 1
allele frequency: 8.944543828264759e-6
allele num: 111800
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1167-28T>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1428-28T>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.38-28T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.130-28T>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1377-28T>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2055-28T>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*103-28T>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2055-28T>C
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5094
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4736
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2828
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

14-24659044-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24659044
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24659044
    reference: chr 14
allele count: 1
allele frequency: 8.992482284809899e-6
allele num: 111204
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1167-30A>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*103-30A>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.38-30A>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2055-30A>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1377-30A>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.130-30A>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2055-30A>C
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1428-30A>C
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1922
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2802
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7275
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1701
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

14-24659047-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24659047
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24659046
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 110884
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1377-34delC
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2055-34delC
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*103-34delC
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2055-34delC
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.130-34delC
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1428-34delC
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1167-34delC
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.38-34delC
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4388
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4863
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4367
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: AG
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

14-24659048-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24659048
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24659048
    reference: chr 14
allele count: 1
allele frequency: 9.022990579997834e-6
allele num: 110828
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1428-34C>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1167-34C>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2055-34C>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.130-34C>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*103-34C>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2055-34C>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.38-34C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1377-34C>G
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4865
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7054
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2256
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum

14-24659051-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24659051
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24659051
    reference: chr 14
allele count: 1
allele frequency: 9.056330374932077e-6
allele num: 110420
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.130-37G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1428-37G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2055-37G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.38-37G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*103-37G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1167-37G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2055-37G>A
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1377-37G>A
  variant of: http://identifiers.org/hgnc/11864
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4892
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2468
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4206
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1914
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2510
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1782
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/14-24659494-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24659494
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 24659494
    reference: chr 14
allele count: 1
allele frequency: 9.208781494032709e-6
allele num: 108592
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000380063
  ensembl transcript: ENST00000396854
  gene symbol: TM9SF1
  hgvsc: ENST00000396854.4:c.*49T>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254692
  ensembl protein: ENSP00000433967
  ensembl transcript: ENST00000530611
  gene symbol: TM9SF1
  hgvsc: ENST00000530611.1:c.2054+92T>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000259522
  ensembl protein: ENSP00000454374
  ensembl transcript: ENST00000561419
  gene symbol: RP11-468E2.2
  hgvsc: ENST00000561419.1:c.37+92T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000434387
  ensembl transcript: ENST00000524835
  gene symbol: TM9SF1
  hgvsc: ENST00000524835.1:c.1166+92T>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000432997
  ensembl transcript: ENST00000528669
  gene symbol: TM9SF1
  hgvsc: ENST00000528669.1:c.1376+143T>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000451949
  ensembl transcript: ENST00000556387
  gene symbol: TM9SF1
  hgvsc: ENST00000556387.1:c.2054+92T>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000261789
  ensembl transcript: ENST00000261789
  gene symbol: TM9SF1
  hgvsc: ENST00000261789.4:c.1427+92T>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000436486
  ensembl transcript: ENST00000532632
  gene symbol: TM9SF1
  hgvsc: ENST00000532632.1:c.129+92T>G
  variant of: http://identifiers.org/hgnc/11864
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000100926
  ensembl protein: ENSP00000431747
  ensembl transcript: ENST00000529332
  gene symbol: TM9SF1
  hgvsc: ENST00000529332.1:c.*102+92T>G
  variant of: http://identifiers.org/hgnc/11864
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6991
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1607
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum

GenotypeQuality
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4196
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4682
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3922
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2954
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.1974479516454e-5
allele num: 23824
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.749e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.88e-2

DP
type: SiteQuality
SIO_000300: 4.80194e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.584e0

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

MQRankSum
type: SiteQuality
SIO_000300: 4.04e-1

QD
type: SiteQuality
SIO_000300: 1.552e1

GenotypeQuality
all individuals: 3428
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.799999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 8.66e0

FS
type: SiteQuality
SIO_000300: 8.269e0

MQRankSum
type: SiteQuality
SIO_000300: -5.38e-1

DP
type: SiteQuality
SIO_000300: 4.75379e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.38e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3423
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3755
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 9.75e1
variant carriers: 4

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4554
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.939447383891828e-4
allele num: 3402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.327505625757313e-5
allele num: 23108
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.731343283582089e-3
allele num: 268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3816
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.93e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

DP
type: SiteQuality
SIO_000300: 4.75223e5

VQSLOD
type: SiteQuality
SIO_000300: -1.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 1.5659e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

QD
type: SiteQuality
SIO_000300: 1.3e1

GenotypeQuality
all individuals: 1199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2984
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25213
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1814
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3001
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.557195801800118e-5
allele num: 64218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10922
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.808387e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.88e-1

QD
type: SiteQuality
SIO_000300: 1.139e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

FS
type: SiteQuality
SIO_000300: 3.624e0

MQRankSum
type: SiteQuality
SIO_000300: 7.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQ
type: SiteQuality
SIO_000300: 5.895e1

GenotypeQuality
all individuals: 803
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8631
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2977
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1811
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4087
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.557195801800118e-5
allele num: 64218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10956
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.399999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.361e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

FS
type: SiteQuality
SIO_000300: 5.394e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.103e0

DP
type: SiteQuality
SIO_000300: 1.809825e6

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 167
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 134
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6670
bin: 9.75e1
variant carriers: 714

GenotypeQuality
all individuals: 1801
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1195
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 125
bin: 4.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.631961259079903e-3
allele num: 826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 36
allele frequency: 5.587459258109577e-4
allele num: 64430
num of homozygotes: 0

African
type: Population
allele count: 492
allele frequency: 4.847290640394088e-2
allele num: 10150
num of homozygotes: 13

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

South Asian
type: Population
allele count: 175
allele frequency: 1.528117359413203e-2
allele num: 11452
num of homozygotes: 3

Latino
type: Population
allele count: 29
allele frequency: 2.530099459082185e-3
allele num: 11462
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.87e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e-1

FS
type: SiteQuality
SIO_000300: 1.893e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.438e1

DP
type: SiteQuality
SIO_000300: 1.831951e6

VQSLOD
type: SiteQuality
SIO_000300: 4.36e0

MQ
type: SiteQuality
SIO_000300: 6.037e1

GenotypeQuality
all individuals: 67
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26901
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2987
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.204819277108434e-3
allele num: 830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.094633904809061e-5
allele num: 64628
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e-1

DP
type: SiteQuality
SIO_000300: 1.803254e6

FS
type: SiteQuality
SIO_000300: 1.157e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.66e-1

QD
type: SiteQuality
SIO_000300: 1.351e1

GenotypeQuality
all individuals: 96
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1824
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26980
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546838262591263e-5
allele num: 64648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.57e-1

DP
type: SiteQuality
SIO_000300: 1.804379e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.44e-1

FS
type: SiteQuality
SIO_000300: 6.986e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.322e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.326e0

QD
type: SiteQuality
SIO_000300: 1.271e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.801e1

GenotypeQuality
all individuals: 3060
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27794
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2992
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1209
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6019
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8820
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64934
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.935248373274083e-5
allele num: 12602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.164e-1

DP
type: SiteQuality
SIO_000300: 1.816682e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 9.039999999999999e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.838219156607619e-5
allele num: 12758
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65024
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.039999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -1.092e0

VQSLOD
type: SiteQuality
SIO_000300: -6.005e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.37e-1

DP
type: SiteQuality
SIO_000300: 1.818559e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3067
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28320
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 3.477051460361613e-4
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65208
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.955e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.349e1

MQ
type: SiteQuality
SIO_000300: 5.925e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.65e-1

DP
type: SiteQuality
SIO_000300: 1.82591e6

MQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeQuality
all individuals: 3086
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8934
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6017
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 99
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523972080831479e-5
allele num: 65618
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.23e1

VQSLOD
type: SiteQuality
SIO_000300: 3.75e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.840854e6

MQ
type: SiteQuality
SIO_000300: 5.958e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.022e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-1

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9101
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1827
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6031
bin: 9.75e1
variant carriers: 271

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 31365
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.928640308582449e-4
allele num: 10370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 67
allele frequency: 1.013615733736762e-2
allele num: 6610
num of homozygotes: 1

Latino
type: Population
allele count: 4
allele frequency: 3.460207612456747e-4
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 198
allele frequency: 2.981119576018549e-3
allele num: 66418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16138
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.54e-1

QD
type: SiteQuality
SIO_000300: 1.368e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.88e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.51e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 1.881598e6

VQSLOD
type: SiteQuality
SIO_000300: 6.09e0

GenotypeQuality
all individuals: 9153
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3143
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 77
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variant carriers: 0

GenotypeQuality
all individuals: 3027
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.21e-1

QD
type: SiteQuality
SIO_000300: 1.086e1

FS
type: SiteQuality
SIO_000300: 2.412e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

DP
type: SiteQuality
SIO_000300: 1.857236e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -6.096e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.32e-1

GenotypeQuality
all individuals: 3143
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4219
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 5810
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502855425308085e-5
allele num: 66540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.411e1

MQ
type: SiteQuality
SIO_000300: 5.964e1

DP
type: SiteQuality
SIO_000300: 1.860576e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.92e-1

FS
type: SiteQuality
SIO_000300: 9.988e0

VQSLOD
type: SiteQuality
SIO_000300: -5.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4216
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5810
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3141
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3025
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31730
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.830384380719951e-4
allele num: 16390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.872e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.86154e6

FS
type: SiteQuality
SIO_000300: 1.767e0

QD
type: SiteQuality
SIO_000300: 1.352e1

MQRankSum
type: SiteQuality
SIO_000300: -2.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e0

GenotypeQuality
all individuals: 3150
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5808
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002371873780286e-5
allele num: 66614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

VQSLOD
type: SiteQuality
SIO_000300: 8.44e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.36e0

FS
type: SiteQuality
SIO_000300: 2.891e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-1

DP
type: SiteQuality
SIO_000300: 1.862491e6

QD
type: SiteQuality
SIO_000300: 1.625e1

GenotypeQuality
all individuals: 37
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1217
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31880
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.891e0

VQSLOD
type: SiteQuality
SIO_000300: 8.44e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
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SIO_000300: 1.862491e6

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-1

BaseQRankSum
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SIO_000300: 5.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.05e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
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allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
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allele count: 35
allele frequency: 5.24863535480775e-4
allele num: 66684
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: -7.0e-3

VQSLOD
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FS
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InbreedingCoeff
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SIO_000300: -5.0e-4

QD
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MQRankSum
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SIO_000300: 1.13e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 1.865208e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10402
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.388e0

FS
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SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: -1.63e0

MQ
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ReadPosRankSum
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SIO_000300: 1.54e0

QD
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SIO_000300: 1.652e1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.33e-2

DP
type: SiteQuality
SIO_000300: 1.863971e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.311604253351826e-4
allele num: 8652
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.864104e6

MQRankSum
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SIO_000300: 1.52e-1

BaseQRankSum
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SIO_000300: -3.147e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

FS
type: SiteQuality
SIO_000300: 5.669999999999999e-1

QD
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SIO_000300: 1.282e1

VQSLOD
type: SiteQuality
SIO_000300: 3.21e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.74e-1

BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.31e-1

DP
type: SiteQuality
SIO_000300: 1.864154e6

MQRankSum
type: SiteQuality
SIO_000300: 5.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.247e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.864096e6

InbreedingCoeff
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.888e1

MQRankSum
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FS
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
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allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
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MQRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQ
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FS
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QD
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

Other
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East Asian
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allele num: 8654
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South Asian
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ReadPosRankSum
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MQ
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DP
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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FS
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66736
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African
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European (Finnish)
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South Asian
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
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DP
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MQ
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MQRankSum
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InbreedingCoeff
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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Latino
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African
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East Asian
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European (Non-Finnish)
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European (Finnish)
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MQ
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VQSLOD
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QD
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DP
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
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allele frequency: 1.728011059270779e-4
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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FS
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VQSLOD
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ReadPosRankSum
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DP
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele num: 11574
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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QD
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FS
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ReadPosRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8652
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European (Finnish)
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African
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South Asian
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Other
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Latino
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European (Non-Finnish)
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ClippingRankSum
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BaseQRankSum
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QD
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MQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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DP
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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South Asian
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allele frequency: 4.240368306275745e-4
allele num: 16508
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 30
allele frequency: 4.496133325340207e-4
allele num: 66724
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Other
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East Asian
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allele num: 8652
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DP
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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MQ
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FS
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ClippingRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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European (Non-Finnish)
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allele count: 0
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East Asian
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South Asian
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African
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ClippingRankSum
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BaseQRankSum
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FS
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QD
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InbreedingCoeff
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DP
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VQSLOD
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MQRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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European (Non-Finnish)
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South Asian
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European (Finnish)
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African
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Other
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FS
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ReadPosRankSum
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MQ
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VQSLOD
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MQRankSum
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QD
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Non-Finnish)
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allele num: 66714
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African
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East Asian
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European (Finnish)
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Other
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VQSLOD
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DP
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MQRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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MQ
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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South Asian
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QD
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FS
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ClippingRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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South Asian
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European (Non-Finnish)
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East Asian
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European (Finnish)
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Other
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InbreedingCoeff
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VQSLOD
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FS
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DP
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ReadPosRankSum
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QD
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SIO_000300: 1.043e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.051e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -8.48e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
SIO_000300: 1.858429e6

MQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e-1

QD
type: SiteQuality
SIO_000300: 1.155e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.87e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.494678778067572e-5
allele num: 66714
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.858429e6

QD
type: SiteQuality
SIO_000300: 1.155e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.87e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.41e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.275e1

MQRankSum
type: SiteQuality
SIO_000300: -7.78e-1

FS
type: SiteQuality
SIO_000300: 7.257e0

DP
type: SiteQuality
SIO_000300: 1.857892e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.911e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.74e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.645e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.979e1

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

FS
type: SiteQuality
SIO_000300: 3.657e0

DP
type: SiteQuality
SIO_000300: 1.858201e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.47e-1

QD
type: SiteQuality
SIO_000300: 1.309e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.54e-1

DP
type: SiteQuality
SIO_000300: 1.858186e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.31e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

QD
type: SiteQuality
SIO_000300: 1.058e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.99e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 8.52e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.974e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.592912705272256e-4
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.15e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

East Asian
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Other
type: Population
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MQ
type: SiteQuality
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FS
type: SiteQuality
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QD
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.57e-1

BaseQRankSum
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SIO_000300: -5.023e0

MQRankSum
type: SiteQuality
SIO_000300: 4.63e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 5.16e-1

QD
type: SiteQuality
SIO_000300: 1.297e1

DP
type: SiteQuality
SIO_000300: 1.857896e6

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.637625289128758e-5
allele num: 10376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.26e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

MQRankSum
type: SiteQuality
SIO_000300: 5.94e-1

DP
type: SiteQuality
SIO_000300: 1.857782e6

VQSLOD
type: SiteQuality
SIO_000300: 2.68e-1

FS
type: SiteQuality
SIO_000300: 7.001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.66e-1

QD
type: SiteQuality
SIO_000300: 1.086e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.857706e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.82e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.28e1

FS
type: SiteQuality
SIO_000300: 6.511e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.66e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 3.15173345339937e-4
allele num: 66630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
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East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.389999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.97e0

QD
type: SiteQuality
SIO_000300: 1.348e1

DP
type: SiteQuality
SIO_000300: 1.857054e6

FS
type: SiteQuality
SIO_000300: 1.123e0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 20
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50195253829979e-5
allele num: 66580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.562e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

DP
type: SiteQuality
SIO_000300: 1.854537e6

MQRankSum
type: SiteQuality
SIO_000300: 2.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.19e-1

QD
type: SiteQuality
SIO_000300: 1.552e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 19
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.069434328720563e-5
allele num: 16476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.005e0

VQSLOD
type: SiteQuality
SIO_000300: -5.818e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.84e0

MQRankSum
type: SiteQuality
SIO_000300: -1.319e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.497e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504121292341014e-5
allele num: 66484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.42e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
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SIO_000300: 1.852475e6

MQ
type: SiteQuality
SIO_000300: 5.907e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -6.31e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10308
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66436
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Latino
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allele num: 11554
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South Asian
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allele count: 1
allele frequency: 6.090133982947625e-5
allele num: 16420
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Other
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InbreedingCoeff
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DP
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VQSLOD
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BaseQRankSum
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FS
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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QD
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66238
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Latino
type: Population
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Other
type: Population
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African
type: Population
allele count: 1
allele frequency: 9.735202492211838e-5
allele num: 10272
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South Asian
type: Population
allele count: 0
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16014
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512264464809606e-5
allele num: 66126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.73e-1

QD
type: SiteQuality
SIO_000300: 1.265e1

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.047e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

FS
type: SiteQuality
SIO_000300: 9.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

DP
type: SiteQuality
SIO_000300: 1.838818e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.09e0

GenotypeQuality
all individuals: 273
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1826
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variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.575542201750907e-5
allele num: 65566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15050
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e0

MQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 1.325e1

DP
type: SiteQuality
SIO_000300: 1.814567e6

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.96e-1

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525832341542311e-5
allele num: 65538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15008
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

FS
type: SiteQuality
SIO_000300: 3.618e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.164e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.868e0

DP
type: SiteQuality
SIO_000300: 1.81446e6

GenotypeQuality
all individuals: 279
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8958
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14918
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.844457570387872e-5
allele num: 10158
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.59e0

DP
type: SiteQuality
SIO_000300: 1.811351e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.258e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 155
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variant carriers: 0

GenotypeQuality
all individuals: 8839
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.906875371507826e-5
allele num: 10094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65042
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.025e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.843e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.59e-1

QD
type: SiteQuality
SIO_000300: 1.218e1

FS
type: SiteQuality
SIO_000300: 2.629e0

VQSLOD
type: SiteQuality
SIO_000300: 6.25e-1

DP
type: SiteQuality
SIO_000300: 1.788049e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

GenotypeQuality
all individuals: 8831
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538461538461538e-5
allele num: 65000
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

QD
type: SiteQuality
SIO_000300: 5.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.018e0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 7.497e0

DP
type: SiteQuality
SIO_000300: 1.786494e6

MQ
type: SiteQuality
SIO_000300: 5.909e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
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GenotypeQuality
all individuals: 1191
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10044
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.089948397861756e-5
allele num: 64726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.35e0

DP
type: SiteQuality
SIO_000300: 1.772164e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.618e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

QD
type: SiteQuality
SIO_000300: 1.243e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5628
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.544974198930878e-5
allele num: 64726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

FS
type: SiteQuality
SIO_000300: 3.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.618e0

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-3

DP
type: SiteQuality
SIO_000300: 1.772164e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e-1

QD
type: SiteQuality
SIO_000300: 1.243e1

GenotypeQuality
all individuals: 130
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variant carriers: 0

GenotypeQuality
all individuals: 217
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 167
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 504
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GenotypeQuality
all individuals: 2958
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.783312577833126e-5
allele num: 12848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.525e0

FS
type: SiteQuality
SIO_000300: 2.879e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.676e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.93e-1

QD
type: SiteQuality
SIO_000300: 9.82e0

DP
type: SiteQuality
SIO_000300: 1.760586e6

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1186
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GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.33038907722452e-5
allele num: 64306
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10000
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.36e-1

QD
type: SiteQuality
SIO_000300: 1.245e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.563e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.753279e6

MQRankSum
type: SiteQuality
SIO_000300: -1.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.89e0

GenotypeQuality
all individuals: 288
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9928
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.567496394758292e-5
allele num: 63796
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11770
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.306e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.09e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.718203e6

VQSLOD
type: SiteQuality
SIO_000300: 4.14e-1

QD
type: SiteQuality
SIO_000300: 1.47e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.514233797698365e-4
allele num: 6604
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9912
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63762
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e0

DP
type: SiteQuality
SIO_000300: 1.70869e6

MQRankSum
type: SiteQuality
SIO_000300: -1.436e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

FS
type: SiteQuality
SIO_000300: 1.064e0

VQSLOD
type: SiteQuality
SIO_000300: 1.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.57e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.143e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.575150426865766e-5
allele num: 63486
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.079e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.42e-1

DP
type: SiteQuality
SIO_000300: 1.677056e6

VQSLOD
type: SiteQuality
SIO_000300: 1.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

QD
type: SiteQuality
SIO_000300: 1.222e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.579030475288173e-5
allele num: 63330
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.896e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.39e0

QD
type: SiteQuality
SIO_000300: 1.517e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.74e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.719e0

VQSLOD
type: SiteQuality
SIO_000300: -9.631e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.65339e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63240
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.795e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.631847e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 63216
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8460
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South Asian
type: Population
allele count: 1
allele frequency: 9.45000945000945e-5
allele num: 10582
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.546e0

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.49e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63086
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 1.019367991845056e-4
allele num: 9810
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-2

DP
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.451e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9000
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.597290994473373e-5
allele num: 62606
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

DP
type: SiteQuality
SIO_000300: 1.539181e6

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
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MQRankSum
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