17-57181896-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57181896
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57181896
    reference: chr 17
allele count: 1
allele frequency: 8.683721495684191e-6
allele num: 115158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.22-141C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.22-141C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-345-141C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.22-141C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.22-141C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.22-141C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.225-141C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464688
  ensembl transcript: ENST00000580122
  gene symbol: TRIM37
  hgvsc: ENST00000580122.1:c.20-141C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.21+1906C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.272-141C>T
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8040
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

17-57181903-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57181903
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57181903
    reference: chr 17
allele count: 1
allele frequency: 8.692930908585139e-6
allele num: 115036
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.21+1899A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.22-148A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.225-148A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464688
  ensembl transcript: ENST00000580122
  gene symbol: TRIM37
  hgvsc: ENST00000580122.1:c.20-148A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.22-148A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-345-148A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.22-148A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.22-148A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.22-148A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.272-148A>G
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

17-57181906-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57181906
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57181905
    reference: chr 17
allele count: 1
allele frequency: 8.698526469616046e-6
allele num: 114962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.21+1895delC
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.22-152delC
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.22-152delC
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.22-152delC
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.22-152delC
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464688
  ensembl transcript: ENST00000580122
  gene symbol: TRIM37
  hgvsc: ENST00000580122.1:c.20-152delC
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.22-152delC
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.225-152delC
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.272-152delC
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-345-152delC
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7939
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2073
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6064
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: AG
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-57183751-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183751
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183751
    reference: chr 17
allele count: 1
allele frequency: 8.506149946411256e-6
allele num: 117562
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.21+51G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.21+51G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.21+51G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.21+51G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-346+51G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.21+51G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.271+51G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.224+51G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464688
  ensembl transcript: ENST00000580122
  gene symbol: TRIM37
  hgvsc: ENST00000580122.1:c.19+51G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.21+51G>A
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6586
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2257
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

17-57183752-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183752
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183752
    reference: chr 17
allele count: 2
allele frequency: 1.70299727520436e-5
allele num: 117440
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.224+50C>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464688
  ensembl transcript: ENST00000580122
  gene symbol: TRIM37
  hgvsc: ENST00000580122.1:c.19+50C>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.21+50C>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.271+50C>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.21+50C>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.21+50C>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.21+50C>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.21+50C>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-346+50C>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.21+50C>A
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17945
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7135
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2637
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2273
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-57183754-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183754
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183754
    reference: chr 17
allele count: 1
allele frequency: 8.504124500382685e-6
allele num: 117590
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464688
  ensembl transcript: ENST00000580122
  gene symbol: TRIM37
  hgvsc: ENST00000580122.1:c.19+48A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.21+48A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-346+48A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.224+48A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.271+48A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.21+48A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.21+48A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.21+48A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.21+48A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.21+48A>G
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15528
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7074
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2608
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

17-57183755-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183755
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183755
    reference: chr 17
allele count: 1
allele frequency: 8.505715841045183e-6
allele num: 117568
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.21+47G>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464688
  ensembl transcript: ENST00000580122
  gene symbol: TRIM37
  hgvsc: ENST00000580122.1:c.19+47G>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.21+47G>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.271+47G>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-346+47G>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.21+47G>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.224+47G>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.21+47G>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.21+47G>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.21+47G>C
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

17-57183760-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183760
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183760
    reference: chr 17
allele count: 1
allele frequency: 8.499065102838687e-6
allele num: 117660
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.21+42C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.224+42C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.21+42C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.21+42C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.21+42C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-346+42C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.271+42C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464688
  ensembl transcript: ENST00000580122
  gene symbol: TRIM37
  hgvsc: ENST00000580122.1:c.19+42C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.21+42C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.21+42C>G
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2376
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7824
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ

17-57183761-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183761
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183761
    reference: chr 17
allele count: 5
allele frequency: 4.247943995106368e-5
allele num: 117704
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.21+41C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.21+41C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.271+41C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-346+41C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.21+41C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.21+41C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.21+41C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.224+41C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.21+41C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464688
  ensembl transcript: ENST00000580122
  gene symbol: TRIM37
  hgvsc: ENST00000580122.1:c.19+41C>T
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17514
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7842
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ

17-57183761-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183761
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183761
    reference: chr 17
allele count: 1
allele frequency: 8.495887990212738e-6
allele num: 117704
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.21+41C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464688
  ensembl transcript: ENST00000580122
  gene symbol: TRIM37
  hgvsc: ENST00000580122.1:c.19+41C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.21+41C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.21+41C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.21+41C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.271+41C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.21+41C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.224+41C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.21+41C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-346+41C>G
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17514
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP

17-57183765-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183765
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183765
    reference: chr 17
allele count: 1
allele frequency: 8.496321092966746e-6
allele num: 117698
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464688
  ensembl transcript: ENST00000580122
  gene symbol: TRIM37
  hgvsc: ENST00000580122.1:c.19+37C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.21+37C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.21+37C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.21+37C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.21+37C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.21+37C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-346+37C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.271+37C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.224+37C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.21+37C>T
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18287
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

17-57183768-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183768
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183768
    reference: chr 17
allele count: 7
allele frequency: 5.949547834364588e-5
allele num: 117656
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.21+34G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.21+34G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464688
  ensembl transcript: ENST00000580122
  gene symbol: TRIM37
  hgvsc: ENST00000580122.1:c.19+34G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.21+34G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-346+34G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.21+34G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.21+34G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.271+34G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.21+34G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.224+34G>A
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7378
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum

17-57183769-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183769
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183769
    reference: chr 17
allele count: 1
allele frequency: 8.499498529586754e-6
allele num: 117654
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.21+33C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.271+33C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.224+33C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464688
  ensembl transcript: ENST00000580122
  gene symbol: TRIM37
  hgvsc: ENST00000580122.1:c.19+33C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.21+33C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.21+33C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-346+33C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.21+33C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.21+33C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.21+33C>T
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7429
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7857
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2271
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

17-57183777-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183777
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183777
    reference: chr 17
allele count: 38
allele frequency: 3.223289112068673e-4
allele num: 117892
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.21+25T>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.271+25T>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.224+25T>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-346+25T>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.21+25T>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.21+25T>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.21+25T>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.21+25T>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.21+25T>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464688
  ensembl transcript: ENST00000580122
  gene symbol: TRIM37
  hgvsc: ENST00000580122.1:c.19+25T>C
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19726
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 19362
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7455
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2215
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD

17-57183778-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183778
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183778
    reference: chr 17
allele count: 12
allele frequency: 1.01813985847856e-4
allele num: 117862
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.271+24G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.21+24G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464688
  ensembl transcript: ENST00000580122
  gene symbol: TRIM37
  hgvsc: ENST00000580122.1:c.19+24G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.21+24G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.224+24G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-346+24G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.21+24G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.21+24G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.21+24G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.21+24G>A
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7479
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19801
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7398
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

17-57183785-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183785
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183785
    reference: chr 17
allele count: 1
allele frequency: 8.48147645542136e-6
allele num: 117904
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.21+17G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.21+17G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.21+17G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-346+17G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.21+17G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464688
  ensembl transcript: ENST00000580122
  gene symbol: TRIM37
  hgvsc: ENST00000580122.1:c.19+17G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.224+17G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.271+17G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.21+17G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.21+17G>A
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7500
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7386
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/17-57183788-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183788
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183788
    reference: chr 17
allele count: 1
allele frequency: 8.477593719798572e-6
allele num: 117958
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.21+14G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.21+14G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.21+14G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.21+14G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.271+14G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-346+14G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.224+14G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464688
  ensembl transcript: ENST00000580122
  gene symbol: TRIM37
  hgvsc: ENST00000580122.1:c.19+14G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.21+14G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.21+14G>T
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2412
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

17-57183788-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183788
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183788
    reference: chr 17
allele count: 1
allele frequency: 8.477593719798572e-6
allele num: 117958
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.21+14G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-346+14G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.21+14G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.271+14G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.21+14G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.224+14G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.21+14G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.21+14G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.21+14G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464688
  ensembl transcript: ENST00000580122
  gene symbol: TRIM37
  hgvsc: ENST00000580122.1:c.19+14G>A
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8103
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD

17-57183790-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183790
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183790
    reference: chr 17
allele count: 1
allele frequency: 8.480181815098116e-6
allele num: 117922
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.21+12G>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.271+12G>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.21+12G>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.21+12G>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-346+12G>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.21+12G>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464688
  ensembl transcript: ENST00000580122
  gene symbol: TRIM37
  hgvsc: ENST00000580122.1:c.19+12G>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.21+12G>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.21+12G>C
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.224+12G>C
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7531
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7386
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-57183792-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183792
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183791
    reference: chr 17
allele count: 1
allele frequency: 8.480181815098116e-6
allele num: 117922
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.21+9delG
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.224+9delG
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.271+9delG
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-346+9delG
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.21+9delG
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.21+9delG
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.21+9delG
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464688
  ensembl transcript: ENST00000580122
  gene symbol: TRIM37
  hgvsc: ENST00000580122.1:c.19+9delG
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.21+9delG
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.21+9delG
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7385
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
reference allele: AC
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-57183793-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183793
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183793
    reference: chr 17
allele count: 2
allele frequency: 1.695892548248143e-5
allele num: 117932
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.21+9G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.271+9G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464688
  ensembl transcript: ENST00000580122
  gene symbol: TRIM37
  hgvsc: ENST00000580122.1:c.19+9G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.21+9G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.21+9G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.224+9G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.21+9G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.21+9G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.21+9G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-346+9G>T
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7550
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2315
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/17-57183800-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183800
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183800
    reference: chr 17
allele count: 2
allele frequency: 1.697908177125781e-5
allele num: 117792
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.21+2T>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.21+2T>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.21+2T>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.21+2T>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-346+2T>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464688
  ensembl transcript: ENST00000580122
  gene symbol: TRIM37
  hgvsc: ENST00000580122.1:c.19+2T>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.271+2T>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.21+2T>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.21+2T>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.224+2T>G
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 2.75e1
  variant carriers: 0
hgvs: c.21+2T>G
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

17-57183816-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183816
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183816
    reference: chr 17
allele count: 1
allele frequency: 8.514841368505305e-6
allele num: 117442
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464688
  ensembl transcript: ENST00000580122
  gene symbol: TRIM37
  hgvsc: ENST00000580122.1:c.5G>A
  hgvsp: ENSP00000464688.1:p.Glu3Lys
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.7G>A
  hgvsp: ENSP00000262294.7:p.Glu3Lys
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.7G>A
  hgvsp: ENSP00000464263.1:p.Glu3Lys
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.7G>A
  hgvsp: ENSP00000462340.1:p.Glu3Lys
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.7G>A
  hgvsp: ENSP00000376784.2:p.Glu3Lys
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.7G>A
  hgvsp: ENSP00000464590.1:p.Glu3Lys
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-360G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.7G>A
  hgvsp: ENSP00000376785.3:p.Glu3Lys
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.257G>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.210G>A
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu3Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

17-57183817-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183817
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183817
    reference: chr 17
allele count: 1
allele frequency: 8.51397142711189e-6
allele num: 117454
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.6T>A
  hgvsp: ENSP00000262294.7:p.Asp2Glu
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.6T>A
  hgvsp: ENSP00000462340.1:p.Asp2Glu
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.209T>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.6T>A
  hgvsp: ENSP00000376784.2:p.Asp2Glu
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.6T>A
  hgvsp: ENSP00000376785.3:p.Asp2Glu
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.6T>A
  hgvsp: ENSP00000464590.1:p.Asp2Glu
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-361T>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.6T>A
  hgvsp: ENSP00000464263.1:p.Asp2Glu
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464688
  ensembl transcript: ENST00000580122
  gene symbol: TRIM37
  hgvsc: ENST00000580122.1:c.4T>A
  hgvsp: ENSP00000464688.1:p.Asp2Glu
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.256T>A
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp2Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

17-57183823-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183823
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183823
    reference: chr 17
allele count: 1
allele frequency: 8.554466286848364e-6
allele num: 116898
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.-1A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.-1A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.250A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.-1A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-367A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.-1A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.-1A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464263
  ensembl transcript: ENST00000584889
  gene symbol: TRIM37
  hgvsc: ENST00000584889.1:c.-1A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.203A>G
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20644
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17069
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32354
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

17-57183837-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183837
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183837
    reference: chr 17
allele count: 1
allele frequency: 8.717939776472025e-6
allele num: 114706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.-15C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.-15C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.-15C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-381C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.-15C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.189C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.236C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.-15C>T
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7369
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3000
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

17-57183840-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183840
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183840
    reference: chr 17
allele count: 3
allele frequency: 2.623019620186759e-5
allele num: 114372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.-18C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.-18C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.-18C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.-18C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.-18C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-384C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.233C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.186C>T
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12079
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5964
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2830
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2281
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22211
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5663
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

17-57183840-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183840
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183840
    reference: chr 17
allele count: 1
allele frequency: 8.743398733955863e-6
allele num: 114372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.-18C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.-18C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-384C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.-18C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.186C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.-18C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.-18C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.233C>G
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5964
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3374
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

17-57183842-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183842
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183842
    reference: chr 17
allele count: 7
allele frequency: 6.131530079534705e-5
allele num: 114164
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.-20C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.-20C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.-20C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.231C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.-20C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.-20C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-386C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.184C>G
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8083
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15427
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5806
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7372
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3604
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5496
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-57183843-G-GCCGCTGGCGAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183843
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183854
    reference: chr 17
allele count: 1
allele frequency: 8.762552356250328e-6
allele num: 114122
alternate allele: GCCGCTGGCGAC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: 5' UTR
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8093
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3067
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5487
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

17-57183843-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183843
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183843
    reference: chr 17
allele count: 1
allele frequency: 8.762552356250328e-6
allele num: 114122
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.-21C>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.-21C>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.230C>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.183C>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-387C>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.-21C>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.-21C>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.-21C>A
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: 5' UTR
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8093
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2418
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3067
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5839
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21622
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum

17-57183846-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183846
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183846
    reference: chr 17
allele count: 1
allele frequency: 8.802351988451315e-6
allele num: 113606
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.227C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.-24C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-390C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.-24C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.-24C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.-24C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.180C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.-24C>T
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7030
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3293
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5999
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7365
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

17-57183849-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183849
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183849
    reference: chr 17
allele count: 2
allele frequency: 1.761524775845972e-5
allele num: 113538
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-393C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.177C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.-27C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.-27C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.-27C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.224C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.-27C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.-27C>T
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8773
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13723
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12480
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4201
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3672
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5137
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

17-57183852-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183852
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183852
    reference: chr 17
allele count: 1
allele frequency: 8.826904404625297e-6
allele num: 113290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-396C>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.-30C>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.-30C>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.-30C>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.221C>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.-30C>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.-30C>A
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.174C>A
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9536
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4615
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1570
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2949
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ

17-57183857-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183857
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183857
    reference: chr 17
allele count: 1
allele frequency: 8.922994556973321e-6
allele num: 112070
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.169C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-401C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.-35C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.-35C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.-35C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.216C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.-35C>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.-35C>T
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10379
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12932
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5232
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13490
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5252
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2464
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-57183861-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183861
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183861
    reference: chr 17
allele count: 1
allele frequency: 8.889837138183629e-6
allele num: 112488
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.-39C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.-39C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.-39C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-405C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.-39C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.-39C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.212C>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.165C>G
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10957
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12954
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5266
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5273
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1628
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3931
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3276
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-57183865-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183865
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183865
    reference: chr 17
allele count: 1
allele frequency: 8.916470504315571e-6
allele num: 112152
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.-43G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.-43G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.-43G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.-43G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.161G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.-43G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.208G>T
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-409G>T
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13867
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11406
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9334
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7353
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12915
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3670
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-57183872-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57183872
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57183872
    reference: chr 17
allele count: 1
allele frequency: 8.962982880702698e-6
allele num: 111570
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376784
  ensembl transcript: ENST00000393065
  gene symbol: TRIM37
  hgvsc: ENST00000393065.2:c.-50A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000462340
  ensembl transcript: ENST00000577554
  gene symbol: TRIM37
  hgvsc: ENST00000577554.1:c.-50A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000365319
  ensembl transcript: ENST00000376149
  gene symbol: TRIM37
  hgvsc: ENST00000376149.3:c.-416A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000580620
  gene symbol: TRIM37
  hgvsc: ENST00000580620.1:n.154A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000464590
  ensembl transcript: ENST00000580973
  gene symbol: TRIM37
  hgvsc: ENST00000580973.1:c.-50A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108395
  ensembl transcript: ENST00000583387
  gene symbol: TRIM37
  hgvsc: ENST00000583387.1:n.201A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000262294
  ensembl transcript: ENST00000262294
  gene symbol: TRIM37
  hgvsc: ENST00000262294.7:c.-50A>G
  variant of: http://identifiers.org/hgnc/7523
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000108395
  ensembl protein: ENSP00000376785
  ensembl transcript: ENST00000393066
  gene symbol: TRIM37
  hgvsc: ENST00000393066.3:c.-50A>G
  variant of: http://identifiers.org/hgnc/7523
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13605
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12860
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7355
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5915
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5110
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

17-57189590-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57189590
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57189590
    reference: chr 17
allele count: 3
allele frequency: 2.513404825737265e-5
allele num: 119360
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224738
  ensembl transcript: ENST00000451775
  gene symbol: AC099850.1
  hgvsc: ENST00000451775.1:n.994+4638C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.247G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.*48G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.*104G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*350G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.*48G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.*48G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.*104G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.*104G>A
  variant of: http://identifiers.org/hgnc/28006
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5533
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9599
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2454
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3234
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS

17-57189591-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57189591
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57189591
    reference: chr 17
allele count: 2
allele frequency: 1.674452872523903e-5
allele num: 119442
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.*47C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.*47C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.*103C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.246C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.*103C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.*103C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*349C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.*47C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224738
  ensembl transcript: ENST00000451775
  gene symbol: AC099850.1
  hgvsc: ENST00000451775.1:n.994+4639G>A
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9622
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

17-57189592-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57189592
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57189592
    reference: chr 17
allele count: 9
allele frequency: 7.528734670659685e-5
allele num: 119542
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.*102C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*348C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.*46C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.245C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224738
  ensembl transcript: ENST00000451775
  gene symbol: AC099850.1
  hgvsc: ENST00000451775.1:n.994+4640G>A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.*46C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.*102C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.*46C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.*102C>T
  variant of: http://identifiers.org/hgnc/28006
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9600
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14298
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20371
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3148
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

17-57189601-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57189601
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57189601
    reference: chr 17
allele count: 2
allele frequency: 1.670257720766314e-5
allele num: 119742
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.*37A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.*37A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.*37A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*339A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.*93A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224738
  ensembl transcript: ENST00000451775
  gene symbol: AC099850.1
  hgvsc: ENST00000451775.1:n.994+4649T>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.*93A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.*93A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.236A>G
  variant of: http://identifiers.org/hgnc/28006
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3076
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2631
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

17-57189602-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57189602
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57189602
    reference: chr 17
allele count: 1
allele frequency: 8.349893956346754e-6
allele num: 119762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.235G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.*36G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.*92G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*338G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.*92G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.*36G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.*92G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.*36G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224738
  ensembl transcript: ENST00000451775
  gene symbol: AC099850.1
  hgvsc: ENST00000451775.1:n.994+4650C>T
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21093
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5353
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

17-57189604-TCTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57189604
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57189601
    reference: chr 17
allele count: 1
allele frequency: 8.345294922722569e-6
allele num: 119828
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.*87_*89delGAG
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.*87_*89delGAG
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.*31_*33delGAG
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.*31_*33delGAG
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*333_*335delGAG
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.*87_*89delGAG
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224738
  ensembl transcript: ENST00000451775
  gene symbol: AC099850.1
  hgvsc: ENST00000451775.1:n.994+4653_994+4655delCTC
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.*31_*33delGAG
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.230_232delGAG
  variant of: http://identifiers.org/hgnc/28006
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5352
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33624
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: TCTC
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

17-57189609-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57189609
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57189609
    reference: chr 17
allele count: 1
allele frequency: 8.335139280177371e-6
allele num: 119974
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*331C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224738
  ensembl transcript: ENST00000451775
  gene symbol: AC099850.1
  hgvsc: ENST00000451775.1:n.994+4657G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.*29C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.*85C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.*29C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.*85C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.228C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.*85C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.*29C>T
  variant of: http://identifiers.org/hgnc/28006
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9523
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5352
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

17-57189640-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57189640
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57189640
    reference: chr 17
allele count: 1
allele frequency: 8.297515723792297e-6
allele num: 120518
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.277T>A
  hgvsp: ENSP00000462918.1:p.Ter93ArgextTer25
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.*54T>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.*54T>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*222T>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*300T>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224738
  ensembl transcript: ENST00000451775
  gene symbol: AC099850.1
  hgvsc: ENST00000451775.1:n.994+4688A>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.197T>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: stop_lost
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.364T>A
  hgvsp: ENSP00000333433.7:p.Ter122ArgextTer25
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.187T>A
  hgvsp: ENSP00000462220.1:p.Ter63ArgextTer25
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.*54T>A
  variant of: http://identifiers.org/hgnc/28006
canonical: true
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ter122ArgextTer25
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-57189656-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57189656
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57189656
    reference: chr 17
allele count: 32
allele frequency: 2.655337227827934e-4
allele num: 120512
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.*38T>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.181T>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.261T>G
  hgvsp: ENSP00000462918.1:p.Phe87Leu
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224738
  ensembl transcript: ENST00000451775
  gene symbol: AC099850.1
  hgvsc: ENST00000451775.1:n.994+4704A>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.171T>G
  hgvsp: ENSP00000462220.1:p.Phe57Leu
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*284T>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.348T>G
  hgvsp: ENSP00000333433.7:p.Phe116Leu
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*206T>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.*38T>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.*38T>G
  variant of: http://identifiers.org/hgnc/28006
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 22226
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9653
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5375
  bin: 9.75e1
  variant carriers: 32
hgvs: p.Phe116Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum

17-57189673-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57189673
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57189673
    reference: chr 17
allele count: 1
allele frequency: 8.303992559622666e-6
allele num: 120424
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.*21G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.164G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.331G>A
  hgvsp: ENSP00000333433.7:p.Ala111Thr
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224738
  ensembl transcript: ENST00000451775
  gene symbol: AC099850.1
  hgvsc: ENST00000451775.1:n.994+4721C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*267G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.154G>A
  hgvsp: ENSP00000462220.1:p.Ala52Thr
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.*21G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.244G>A
  hgvsp: ENSP00000462918.1:p.Ala82Thr
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*189G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.*21G>A
  variant of: http://identifiers.org/hgnc/28006
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala111Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD

17-57189675-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57189675
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57189675
    reference: chr 17
allele count: 3
allele frequency: 2.491818529162583e-5
allele num: 120394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.242C>T
  hgvsp: ENSP00000462918.1:p.Ala81Val
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.162C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.*19C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*187C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.*19C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*265C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.152C>T
  hgvsp: ENSP00000462220.1:p.Ala51Val
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.*19C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.329C>T
  hgvsp: ENSP00000333433.7:p.Ala110Val
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224738
  ensembl transcript: ENST00000451775
  gene symbol: AC099850.1
  hgvsc: ENST00000451775.1:n.994+4723G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9955
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala110Val
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

17-57189683-CTCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57189683
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57189680
    reference: chr 17
allele count: 1
allele frequency: 8.312413758707254e-6
allele num: 120302
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.*8_*10delAGA
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*176_*178delAGA
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.141_143delAGA
  hgvsp: ENSP00000462220.1:p.Glu48del
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.151_153delAGA
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.*8_*10delAGA
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.318_320delAGA
  hgvsp: ENSP00000333433.7:p.Glu107del
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.231_233delAGA
  hgvsp: ENSP00000462918.1:p.Glu78del
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224738
  ensembl transcript: ENST00000451775
  gene symbol: AC099850.1
  hgvsc: ENST00000451775.1:n.994+4736_994+4738delCTT
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*254_*256delAGA
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.*8_*10delAGA
  variant of: http://identifiers.org/hgnc/28006
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu107del
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: CTCT
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

17-57189696-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57189696
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57189696
    reference: chr 17
allele count: 1
allele frequency: 8.336807002917883e-6
allele num: 119950
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.221T>C
  hgvsp: ENSP00000462918.1:p.Leu74Pro
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.308T>C
  hgvsp: ENSP00000333433.7:p.Leu103Pro
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.328T>C
  hgvsp: ENSP00000462574.1:p.Ter110ArgextTer28
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*244T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224738
  ensembl transcript: ENST00000451775
  gene symbol: AC099850.1
  hgvsc: ENST00000451775.1:n.994+4744A>G
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.226T>C
  hgvsp: ENSP00000411231.2:p.Ter76ArgextTer28
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.139T>C
  hgvsp: ENSP00000462197.1:p.Ter47ArgextTer28
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.131T>C
  hgvsp: ENSP00000462220.1:p.Leu44Pro
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.141T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*166T>C
  variant of: http://identifiers.org/hgnc/28006
canonical: false
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1668
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ter47ArgextTer28
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

17-57189698-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57189698
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57189698
    reference: chr 17
allele count: 5
allele frequency: 4.171811901344992e-5
allele num: 119852
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.224A>C
  hgvsp: ENSP00000411231.2:p.His75Pro
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.219A>C
  hgvsp: ENST00000578105.1:c.219A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*242A>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*164A>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224738
  ensembl transcript: ENST00000451775
  gene symbol: AC099850.1
  hgvsc: ENST00000451775.1:n.994+4746T>G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.306A>C
  hgvsp: ENST00000330137.7:c.306A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.137A>C
  hgvsp: ENSP00000462197.1:p.His46Pro
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.129A>C
  hgvsp: ENST00000581068.1:c.129A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.326A>C
  hgvsp: ENSP00000462574.1:p.His109Pro
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.139A>C
  variant of: http://identifiers.org/hgnc/28006
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18035
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His46Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

17-57189707-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57189707
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57189707
    reference: chr 17
allele count: 1
allele frequency: 8.380122349786308e-6
allele num: 119330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.121-1G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.131-1G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224738
  ensembl transcript: ENST00000451775
  gene symbol: AC099850.1
  hgvsc: ENST00000451775.1:n.994+4755C>T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.211-1G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.216-1G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*156-1G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.318-1G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*234-1G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.298-1G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.129-1G>A
  variant of: http://identifiers.org/hgnc/28006
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17328
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3037
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 3.25e1
  variant carriers: 0
hgvs: c.298-1G>A
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

17-57189727-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57189727
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57189727
    reference: chr 17
allele count: 2
allele frequency: 1.70590242238144e-5
allele num: 117240
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.298-21A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*156-21A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.121-21A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.211-21A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.318-21A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224738
  ensembl transcript: ENST00000451775
  gene symbol: AC099850.1
  hgvsc: ENST00000451775.1:n.994+4775T>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*234-21A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.216-21A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.131-21A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.129-21A>G
  variant of: http://identifiers.org/hgnc/28006
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12212
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

17-57189730-TTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57189730
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57189728
    reference: chr 17
allele count: 1
allele frequency: 8.54978540038645e-6
allele num: 116962
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224738
  ensembl transcript: ENST00000451775
  gene symbol: AC099850.1
  hgvsc: ENST00000451775.1:n.994+4780_994+4781delAT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.216-26_216-25delTA
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.318-26_318-25delTA
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*156-26_*156-25delTA
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.298-26_298-25delTA
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.129-26_129-25delTA
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.211-26_211-25delTA
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.131-26_131-25delTA
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.121-26_121-25delTA
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*234-26_*234-25delTA
  variant of: http://identifiers.org/hgnc/28006
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 11004
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18917
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1466
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5334
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: TTA
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

17-57189749-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57189749
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57189749
    reference: chr 17
allele count: 1
allele frequency: 8.759328685049578e-6
allele num: 114164
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*234-43T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.211-43T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224738
  ensembl transcript: ENST00000451775
  gene symbol: AC099850.1
  hgvsc: ENST00000451775.1:n.994+4797A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.131-43T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.129-43T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.121-43T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.298-43T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.216-43T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.318-43T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*156-43T>C
  variant of: http://identifiers.org/hgnc/28006
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13996
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9783
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5111
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1573
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4107
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4404
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-57189752-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57189752
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57189752
    reference: chr 17
allele count: 1
allele frequency: 8.827995338818462e-6
allele num: 113276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.211-46G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.131-46G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.298-46G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*156-46G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*234-46G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.318-46G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.216-46G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.129-46G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224738
  ensembl transcript: ENST00000451775
  gene symbol: AC099850.1
  hgvsc: ENST00000451775.1:n.994+4800C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.121-46G>A
  variant of: http://identifiers.org/hgnc/28006
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13941
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3449
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3083
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

17-57196621-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57196621
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57196621
    reference: chr 17
allele count: 1
allele frequency: 1.239188083967385e-5
allele num: 80698
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.210+59A>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.317+39A>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.121-6915A>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*233+59A>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*155+59A>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.131-6915A>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.129-6915A>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.297+59A>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.216-6915A>C
  variant of: http://identifiers.org/hgnc/28006
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17032
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5610
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15127
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

17-57196638-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57196638
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57196638
    reference: chr 17
allele count: 2
allele frequency: 2.22543674196061e-5
allele num: 89870
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.216-6932C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*233+42C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.317+22C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*155+42C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.131-6932C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.210+42C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.121-6932C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.129-6932C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.297+42C>T
  variant of: http://identifiers.org/hgnc/28006
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14572
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25905
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3024
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

17-57196641-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57196641
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57196641
    reference: chr 17
allele count: 1
allele frequency: 1.071788386101048e-5
allele num: 93302
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.297+39T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.216-6935T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.121-6935T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.131-6935T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.210+39T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*233+39T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.317+19T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.129-6935T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*155+39T>C
  variant of: http://identifiers.org/hgnc/28006
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27753
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2720
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2422
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: A
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

17-57196644-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57196644
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57196644
    reference: chr 17
allele count: 2
allele frequency: 2.085418752085419e-5
allele num: 95904
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.129-6938C>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*155+36C>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.216-6938C>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.121-6938C>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.317+16C>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.210+36C>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*233+36C>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.297+36C>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.131-6938C>A
  variant of: http://identifiers.org/hgnc/28006
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11931
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11876
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3715
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-57196655-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57196655
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57196655
    reference: chr 17
allele count: 1
allele frequency: 9.474003334849174e-6
allele num: 105552
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.297+25G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.210+25G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*233+25G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.317+5G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.121-6949G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.129-6949G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.216-6949G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*155+25G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.131-6949G>A
  variant of: http://identifiers.org/hgnc/28006
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7385
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 4.25e1
  variant carriers: 0
hgvs: c.317+5G>A
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD

17-57196659-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57196659
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57196659
    reference: chr 17
allele count: 1
allele frequency: 9.18357975939021e-6
allele num: 108890
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.131-6953G>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.216-6953G>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*155+21G>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.121-6953G>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.317+1G>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.210+21G>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.297+21G>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*233+21G>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.129-6953G>C
  variant of: http://identifiers.org/hgnc/28006
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
hgvs: c.317+1G>C
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

17-57196662-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57196662
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57196662
    reference: chr 17
allele count: 4
allele frequency: 3.60451285008831e-5
allele num: 110972
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.216-6956C>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.297+18C>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.315C>G
  hgvsp: ENSP00000462574.1:p.Asp105Glu
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.129-6956C>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*233+18C>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.131-6956C>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.210+18C>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.121-6956C>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*155+18C>G
  variant of: http://identifiers.org/hgnc/28006
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7389
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4823
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4951
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp105Glu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-57196668-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57196668
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57196668
    reference: chr 17
allele count: 1
allele frequency: 8.732099196646874e-6
allele num: 114520
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.131-6962A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.309A>G
  hgvsp: ENST00000583380.1:c.309A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.121-6962A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.297+12A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*233+12A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.129-6962A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.216-6962A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*155+12A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.210+12A>G
  variant of: http://identifiers.org/hgnc/28006
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3123
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41919
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser103Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

17-57196673-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57196673
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57196673
    reference: chr 17
allele count: 1
allele frequency: 8.599931200550395e-6
allele num: 116280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.304C>T
  hgvsp: ENSP00000462574.1:p.Leu102Phe
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.210+7C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*155+7C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.121-6967C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.131-6967C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*233+7C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.297+7C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.216-6967C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.129-6967C>T
  variant of: http://identifiers.org/hgnc/28006
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42522
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu102Phe
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

17-57196675-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57196675
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57196675
    reference: chr 17
allele count: 1
allele frequency: 8.550370231031004e-6
allele num: 116954
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.131-6969T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*233+5T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.121-6969T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.129-6969T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*155+5T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.216-6969T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.302T>C
  hgvsp: ENSP00000462574.1:p.Met101Thr
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.297+5T>C
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.210+5T>C
  variant of: http://identifiers.org/hgnc/28006
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3154
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met101Thr
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum

17-57196698-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57196698
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57196698
    reference: chr 17
allele count: 11
allele frequency: 9.174158896432086e-5
allele num: 119902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.279G>A
  hgvsp: ENST00000583380.1:c.279G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*215G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.121-6992G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.216-6992G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.279G>A
  hgvsp: ENST00000330137.7:c.279G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*137G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.192G>A
  hgvsp: ENST00000578105.1:c.192G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.131-6992G>A
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.129-6992G>A
  variant of: http://identifiers.org/hgnc/28006
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4404
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln93Gln
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

17-57196699-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57196699
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57196699
    reference: chr 17
allele count: 2
allele frequency: 1.666722224074136e-5
allele num: 119996
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.121-6993A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.191A>G
  hgvsp: ENSP00000462918.1:p.Gln64Arg
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000411231
  ensembl transcript: ENST00000437036
  gene symbol: SKA2
  hgvsc: ENST00000437036.2:c.216-6993A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000464558
  ensembl transcript: ENST00000578519
  gene symbol: SKA2
  hgvsc: ENST00000578519.1:c.*214A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*136A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462574
  ensembl transcript: ENST00000583380
  gene symbol: SKA2
  hgvsc: ENST00000583380.1:c.278A>G
  hgvsp: ENSP00000462574.1:p.Gln93Arg
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000333433
  ensembl transcript: ENST00000330137
  gene symbol: SKA2
  hgvsc: ENST00000330137.7:c.278A>G
  hgvsp: ENSP00000333433.7:p.Gln93Arg
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462197
  ensembl transcript: ENST00000580541
  gene symbol: SKA2
  hgvsc: ENST00000580541.1:c.129-6993A>G
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl transcript: ENST00000583927
  gene symbol: SKA2
  hgvsc: ENST00000583927.1:n.131-6993A>G
  variant of: http://identifiers.org/hgnc/28006
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln93Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-57196709-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57196709
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 57196709
    reference: chr 17
allele count: 1
allele frequency: 8.311584686736373e-6
allele num: 120314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462918
  ensembl transcript: ENST00000578105
  gene symbol: SKA2
  hgvsc: ENST00000578105.1:c.181C>T
  hgvsp: ENSP00000462918.1:p.Gln61Ter
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000463167
  ensembl transcript: ENST00000583976
  gene symbol: SKA2
  hgvsc: ENST00000583976.1:c.*126C>T
  variant of: http://identifiers.org/hgnc/28006
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000182628
  ensembl protein: ENSP00000462220
  ensembl transcript: ENST00000581068
  gene symbol: SKA2
  hgvsc: ENST00000581068.1:c.121-7003C>T
  variant of: http://identifiers.org/hgnc/28006
canonical: true
consequence: stop gained
filter: PASS
hgvs: p.Gln90Ter
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 69
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6104
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37048
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 185
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2083
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2805
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3843
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1330
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62944
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.163602513381429e-4
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.105e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.067e0

FS
type: SiteQuality
SIO_000300: 2.0483e1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.483667e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

QD
type: SiteQuality
SIO_000300: 1.171e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.590634344976777e-5
allele num: 62868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.849e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

DP
type: SiteQuality
SIO_000300: 1.481709e6

QD
type: SiteQuality
SIO_000300: 1.559e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.130456105934282e-5
allele num: 16312
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 6.077e1

FS
type: SiteQuality
SIO_000300: 1.196e0

QD
type: SiteQuality
SIO_000300: 1.65e1

DP
type: SiteQuality
SIO_000300: 1.480895e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.571e0

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.46e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 700
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548275221403357e-5
allele num: 64588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

FS
type: SiteQuality
SIO_000300: 1.976e0

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.784715e6

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1245
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6126
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.099525772556799e-5
allele num: 64526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.64e-1

QD
type: SiteQuality
SIO_000300: 1.151e1

FS
type: SiteQuality
SIO_000300: 1.267e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.95e-1

DP
type: SiteQuality
SIO_000300: 1.78534e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.98e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547748026621266e-5
allele num: 64610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.974e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 9.27e-1

DP
type: SiteQuality
SIO_000300: 1.788081e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-1

QD
type: SiteQuality
SIO_000300: 1.644e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64602
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6136
num of homozygotes: 0

East Asian
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allele num: 8544
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South Asian
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allele count: 0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.45e-1

MQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

DP
type: SiteQuality
SIO_000300: 1.791161e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.116956202593589e-5
allele num: 16348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6156
num of homozygotes: 0

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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QD
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.913e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.411505205576143e-4
allele num: 11334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.805589e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.73e0

QD
type: SiteQuality
SIO_000300: 1.243e1

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.823010411152286e-5
allele num: 11334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.243e1

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-2

DP
type: SiteQuality
SIO_000300: 1.805589e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.824567596187787e-5
allele num: 11332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64660
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.086e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.739e0

VQSLOD
type: SiteQuality
SIO_000300: -2.393e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 1.373e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.427e0

DP
type: SiteQuality
SIO_000300: 1.815125e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.278728606356968e-4
allele num: 16360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.820844e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.724e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.08e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 8.32e0

VQSLOD
type: SiteQuality
SIO_000300: 2.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.17e-1

FS
type: SiteQuality
SIO_000300: 2.231e0

MQRankSum
type: SiteQuality
SIO_000300: 4.54e-1

GenotypeQuality
all individuals: 240
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 99
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.113216774666829e-5
allele num: 16358
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.09e0

DP
type: SiteQuality
SIO_000300: 1.824136e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 2.874e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.109e0

VQSLOD
type: SiteQuality
SIO_000300: -1.318e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.103e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.109e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 35

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Latino
type: Population
allele count: 17
allele frequency: 1.500176491351924e-3
allele num: 11332
num of homozygotes: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.107243190423842e-5
allele num: 16374
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.074149521287431e-4
allele num: 9818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.469821864098052e-4
allele num: 64782
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

VQSLOD
type: SiteQuality
SIO_000300: 3.23e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

DP
type: SiteQuality
SIO_000300: 1.836487e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 1.176e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 12
allele frequency: 1.404823226410677e-3
allele num: 8542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11336
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64758
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.837451e6

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -1.746e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.613944480309877e-4
allele num: 6196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64756
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Other
type: Population
allele count: 0
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South Asian
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num of homozygotes: 0

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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VQSLOD
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MQRankSum
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DP
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ReadPosRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64782
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.818342151675486e-5
allele num: 11340
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.189e0

FS
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MQ
type: SiteQuality
SIO_000300: 5.946e1

ClippingRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ReadPosRankSum
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DP
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VQSLOD
type: SiteQuality
SIO_000300: 4.26e-1

MQRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.168770453482936e-4
allele num: 8556
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6188
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

BaseQRankSum
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MQRankSum
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VQSLOD
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FS
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ReadPosRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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MQ
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SIO_000300: 5.946e1

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.544306143249838e-5
allele num: 64754
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9856
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6186
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 5.886e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.845034e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.711e0

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

InbreedingCoeff
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SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.7e-2

QD
type: SiteQuality
SIO_000300: 1.292e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.74e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.823010411152286e-5
allele num: 11334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9856
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.869e1

MQRankSum
type: SiteQuality
SIO_000300: -2.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.309e0

DP
type: SiteQuality
SIO_000300: 1.845272e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e-1

QD
type: SiteQuality
SIO_000300: 5.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.087849312953528e-5
allele num: 64770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6190
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.92e-1

DP
type: SiteQuality
SIO_000300: 1.846479e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.43e-1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.086e0

MQ
type: SiteQuality
SIO_000300: 5.93e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9850
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6156
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.090999010880316e-5
allele num: 64704
num of homozygotes: 0

Other
type: Population
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MQRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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ClippingRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: 1.11e0

DP
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SIO_000300: 1.846251e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64472
num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.124448799608035e-5
allele num: 16328
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

MQ
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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FS
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QD
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VQSLOD
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MQRankSum
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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Latino
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16324
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European (Non-Finnish)
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allele num: 64484
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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Other
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BaseQRankSum
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DP
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FS
type: SiteQuality
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MQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11280
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6132
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.174536058256989e-4
allele num: 8514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9716
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16278
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64128
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.142e1

InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.927e1

DP
type: SiteQuality
SIO_000300: 1.826562e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.1e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11130
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.185056902523504e-5
allele num: 16168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62726
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6006
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9436
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.907e1

BaseQRankSum
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SIO_000300: 3.13e0

ClippingRankSum
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SIO_000300: -9.22e-1

MQ
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
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InbreedingCoeff
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SIO_000300: -2.5e-3

DP
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SIO_000300: 1.720393e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.92e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.198464736926275e-5
allele num: 62530
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9376
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.67000668002672e-4
allele num: 5988
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16134
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.763e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.077e0

FS
type: SiteQuality
SIO_000300: 7.612e0

MQRankSum
type: SiteQuality
SIO_000300: 4.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.93e-1

QD
type: SiteQuality
SIO_000300: 9.56e0

DP
type: SiteQuality
SIO_000300: 1.694281e6

MQ
type: SiteQuality
SIO_000300: 5.907e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.599232368463138e-5
allele num: 62530
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16134
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5988
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.694281e6

VQSLOD
type: SiteQuality
SIO_000300: -7.763e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

MQ
type: SiteQuality
SIO_000300: 5.907e1

FS
type: SiteQuality
SIO_000300: 7.612e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

QD
type: SiteQuality
SIO_000300: 9.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.077e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.071352046282408e-4
allele num: 9334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.612919764163036e-5
allele num: 62416
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.94e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

QD
type: SiteQuality
SIO_000300: 1.098e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.33e-1

FS
type: SiteQuality
SIO_000300: 6.391e0

DP
type: SiteQuality
SIO_000300: 1.675259e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.284e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.603180710529691e-5
allele num: 62376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.39e-1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.843e1

MQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.77e-1

DP
type: SiteQuality
SIO_000300: 1.673254e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16130
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5970
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.603180710529691e-5
allele num: 62376
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.39e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 5.5119e1

MQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQ
type: SiteQuality
SIO_000300: 5.843e1

DP
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11056
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5920
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 1.07781849536538e-4
allele num: 9278
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62116
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.05e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
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MQ
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VQSLOD
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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African
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.222376180195276e-5
allele num: 62066
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5900
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.636301e6

VQSLOD
type: SiteQuality
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MQRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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QD
type: SiteQuality
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5872
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.218905472636816e-5
allele num: 16080
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61926
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.585e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.61807e6

MQRankSum
type: SiteQuality
SIO_000300: -5.93e-1

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

FS
type: SiteQuality
SIO_000300: 7.48e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2855
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.093135111499781e-4
allele num: 9148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15954
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5764
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.177e0

MQ
type: SiteQuality
SIO_000300: 5.871e1

MQRankSum
type: SiteQuality
SIO_000300: 5.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

FS
type: SiteQuality
SIO_000300: 3.096e0

VQSLOD
type: SiteQuality
SIO_000300: -7.851e-1

DP
type: SiteQuality
SIO_000300: 1.581688e6

QD
type: SiteQuality
SIO_000300: 1.147e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.090988435522584e-4
allele num: 9166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10958
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.572465e6

MQRankSum
type: SiteQuality
SIO_000300: -5.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.918e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

GenotypeQuality
all individuals: 148
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1376
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3797
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.632706374085685e-5
allele num: 61248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15974
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10968
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

FS
type: SiteQuality
SIO_000300: 3.041e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.34e-1

QD
type: SiteQuality
SIO_000300: 1.121e1

DP
type: SiteQuality
SIO_000300: 1.557147e6

MQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1010
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1333
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GenotypeQuality
all individuals: 3098
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.740341106856944e-4
allele num: 5746
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8238
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.447e0

VQSLOD
type: SiteQuality
SIO_000300: -1.846e0

DP
type: SiteQuality
SIO_000300: 1.545591e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.37e-1

QD
type: SiteQuality
SIO_000300: 7.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

GenotypeQuality
all individuals: 63
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 678
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5385
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.128953174797744e-5
allele num: 16316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.036467980445146e-5
allele num: 65866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.42e0

MQRankSum
type: SiteQuality
SIO_000300: -2.905e0

DP
type: SiteQuality
SIO_000300: 1.767581e6

VQSLOD
type: SiteQuality
SIO_000300: -2.562e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.61e-1

MQ
type: SiteQuality
SIO_000300: 5.465e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.026272577996716e-4
allele num: 9744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.175364362952515e-4
allele num: 8508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.353e1

FS
type: SiteQuality
SIO_000300: 2.123e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.947e0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.29e0

MQRankSum
type: SiteQuality
SIO_000300: 5.02e-1

DP
type: SiteQuality
SIO_000300: 1.773048e6

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65938
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.493834696618239e-4
allele num: 16382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.235e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.299e1

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.81e-1

DP
type: SiteQuality
SIO_000300: 1.77507e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 949
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.028284174186906e-5
allele num: 66044
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.799381e6

QD
type: SiteQuality
SIO_000300: 1.249e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.870000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.16e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 258
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 454
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3065
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9738
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66062
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169864295741694e-4
allele num: 8548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 4.455e0

MQRankSum
type: SiteQuality
SIO_000300: 1.96e0

VQSLOD
type: SiteQuality
SIO_000300: -6.674e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.59e-1

DP
type: SiteQuality
SIO_000300: 1.802252e6

QD
type: SiteQuality
SIO_000300: 1.175e1

GenotypeQuality
all individuals: 666
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.026272577996716e-4
allele num: 9744
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66088
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.234e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.47e-1

MQ
type: SiteQuality
SIO_000300: 5.215e1

FS
type: SiteQuality
SIO_000300: 1.019e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.25e0

DP
type: SiteQuality
SIO_000300: 1.805956e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 121
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510300247689241e-5
allele num: 66212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.844e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.18e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.816388e6

MQRankSum
type: SiteQuality
SIO_000300: 6.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.523e1

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3093
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 1.193e1

FS
type: SiteQuality
SIO_000300: 8.561999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -6.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

DP
type: SiteQuality
SIO_000300: 1.832843e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.226e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3090
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 32
allele frequency: 3.721795766457316e-3
allele num: 8598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 1.834208e6

QD
type: SiteQuality
SIO_000300: 8.6e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502765087761481e-5
allele num: 66544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.409999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.831299e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 2.234e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.752e0

QD
type: SiteQuality
SIO_000300: 1.275e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.053388090349076e-4
allele num: 9740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503216884132043e-5
allele num: 66524
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

FS
type: SiteQuality
SIO_000300: 1.767e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

VQSLOD
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e-1

MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.028383381324558e-4
allele num: 9724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66482
num of homozygotes: 0

QD
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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FS
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BaseQRankSum
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SIO_000300: -1.926e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 38
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070171178827243e-5
allele num: 16474
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9694
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66252
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
type: SiteQuality
SIO_000300: 1.823298e6

MQRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
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SIO_000300: -1.25e0

FS
type: SiteQuality
SIO_000300: 2.856e0

MQ
type: SiteQuality
SIO_000300: 5.892e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Latino
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allele frequency: 8.695652173913044e-5
allele num: 11500
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

African
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allele count: 4
allele frequency: 4.132231404958678e-4
allele num: 9680
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66182
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-2

MQ
type: SiteQuality
SIO_000300: 5.94e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

DP
type: SiteQuality
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MQRankSum
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SIO_000300: 2.48e-1

BaseQRankSum
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SIO_000300: 2.3e0

FS
type: SiteQuality
SIO_000300: 2.041e0

QD
type: SiteQuality
SIO_000300: 1.398e1

VQSLOD
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SIO_000300: 1.41e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 6.082725060827251e-5
allele num: 16440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65880
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

QD
type: SiteQuality
SIO_000300: 9.24e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.085e0

InbreedingCoeff
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BaseQRankSum
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SIO_000300: -3.256e0

VQSLOD
type: SiteQuality
SIO_000300: -2.63e-1

DP
type: SiteQuality
SIO_000300: 1.809143e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.100582909587002e-5
allele num: 64504
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.76e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

MQRankSum
type: SiteQuality
SIO_000300: 3.16e0

VQSLOD
type: SiteQuality
SIO_000300: -2.827e0

QD
type: SiteQuality
SIO_000300: 1.702e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.718166e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9460
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8226
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16294
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.554629687208507e-5
allele num: 64324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.695463e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.069e0

FS
type: SiteQuality
SIO_000300: 1.0017e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
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MQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.84e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.643e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.196554715578138e-5
allele num: 16138
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10952
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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MQ
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QD
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VQSLOD
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FS
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DP
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10858
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61982
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South Asian
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QD
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MQ
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MQRankSum
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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DP
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ReadPosRankSum
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FS
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.27148827912048e-5
allele num: 44024
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Latino
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African
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FS
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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DP
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QD
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MQ
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 2
allele frequency: 4.066197698532103e-5
allele num: 49186
num of homozygotes: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
SIO_000300: 1.231938e6

MQ
type: SiteQuality
SIO_000300: 5.87e1

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

BaseQRankSum
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SIO_000300: -3.092e0

QD
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.17e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.702417432754511e-4
allele num: 5874
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 51030
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
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InbreedingCoeff
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SIO_000300: -2.1e-3

ClippingRankSum
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FS
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MQRankSum
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DP
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 7154
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.396843134515994e-4
allele num: 14318
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 52472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.483e-1

MQ
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FS
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SIO_000300: 0.0e0

MQRankSum
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DP
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InbreedingCoeff
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SIO_000300: -8.0e-4

BaseQRankSum
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QD
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ReadPosRankSum
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SIO_000300: 1.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
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allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.086720278200391e-4
allele num: 9202
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 57854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15328
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8856
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e0

DP
type: SiteQuality
SIO_000300: 1.420663e6

ClippingRankSum
type: SiteQuality
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VQSLOD
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MQRankSum
type: SiteQuality
SIO_000300: -2.081e0

BaseQRankSum
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SIO_000300: -5.943e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.981e1

FS
type: SiteQuality
SIO_000300: 1.192e0

QD
type: SiteQuality
SIO_000300: 1.195e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9502
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.673808248527049e-5
allele num: 59744
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.454983e6

MQ
type: SiteQuality
SIO_000300: 5.901e1

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

ReadPosRankSum
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QD
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FS
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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SIO_000300: 3.07e-1

VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9386
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 60932
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Other
type: Population
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South Asian
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allele count: 4
allele frequency: 2.523340903356043e-4
allele num: 15852
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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FS
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VQSLOD
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MQRankSum
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QD
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MQ
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.590179054161498e-5
allele num: 62886
num of homozygotes: 0

South Asian
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East Asian
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Latino
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allele frequency: 0.0e0
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African
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European (Finnish)
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Other
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ClippingRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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MQ
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VQSLOD
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MQRankSum
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QD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 1.039933444259567e-4
allele num: 9616
num of homozygotes: 0

European (Finnish)
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East Asian
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Other
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European (Non-Finnish)
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Latino
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South Asian
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FS
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MQ
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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African
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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allele num: 8248
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European (Finnish)
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.801e1

ClippingRankSum
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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VQSLOD
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FS
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SIO_000300: 5.798e0

DP
type: SiteQuality
SIO_000300: 1.543864e6

QD
type: SiteQuality
SIO_000300: 7.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.87e-1

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1410
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44063
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2143
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1691
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5982
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3179
bin: 9.75e1
variant carriers: 11

African
type: Population
allele count: 11
allele frequency: 1.126818274943659e-3
allele num: 9762
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.32e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.285e0

FS
type: SiteQuality
SIO_000300: 5.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

DP
type: SiteQuality
SIO_000300: 1.58634e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.95e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.59e-1

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1702
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6004
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43989
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2166
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.020874241005347e-5
allele num: 66206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.322e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.11e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.73e0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 1.586765e6

MQRankSum
type: SiteQuality
SIO_000300: 6.17e-1

FS
type: SiteQuality
SIO_000300: 2.898e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0