15-75656405-A-AAGAACCTGGAGGCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656405
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656419
    reference: chr 15
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: AAGAACCTGGAGGCC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsp: ENSP00000456667.2:p.Phe125TrpfsTer64
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsp: ENSP00000457788.1:p.Phe242TrpfsTer37
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsp: ENSP00000267978.4:p.Phe242TrpfsTer37
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsp: ENSP00000455998.1:p.Phe242TrpfsTer37
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24513
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe242TrpfsTer37
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

15-75656422-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656422
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656422
    reference: chr 15
allele count: 2
allele frequency: 1.649566164098842e-5
allele num: 121244
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.357C>G
  hgvsp: ENST00000570257.2:c.357C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.708C>G
  hgvsp: ENST00000565683.1:c.708C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+407C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.604C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+407C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*263C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.*47C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.*47C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.708C>G
  hgvsp: ENST00000267978.5:c.708C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.229C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+407C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.708C>G
  hgvsp: ENST00000569482.1:c.708C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala236Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

15-75656433-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656433
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656433
    reference: chr 15
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.593G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.*36G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*252G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.697G>A
  hgvsp: ENSP00000267978.4:p.Val233Met
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.346G>A
  hgvsp: ENSP00000456667.2:p.Val116Met
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+396G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.*36G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+396G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.697G>A
  hgvsp: ENSP00000455998.1:p.Val233Met
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.218G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+396G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.697G>A
  hgvsp: ENSP00000457788.1:p.Val233Met
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6403
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val233Met
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD

15-75656434-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656434
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656434
    reference: chr 15
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+395A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+395A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.345A>G
  hgvsp: ENST00000570257.2:c.345A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.696A>G
  hgvsp: ENST00000569482.1:c.696A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*251A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.696A>G
  hgvsp: ENST00000267978.5:c.696A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.*35A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.696A>G
  hgvsp: ENST00000565683.1:c.696A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.217A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.*35A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+395A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.592A>G
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro232Pro
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

15-75656440-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656440
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656440
    reference: chr 15
allele count: 1
allele frequency: 8.25218682950982e-6
allele num: 121180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.586C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.339C>A
  hgvsp: ENST00000570257.2:c.339C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*245C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.690C>A
  hgvsp: ENST00000267978.5:c.690C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.*29C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+389C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+389C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.690C>A
  hgvsp: ENST00000569482.1:c.690C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+389C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.211C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.690C>A
  hgvsp: ENST00000565683.1:c.690C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.*29C>A
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr230Thr
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

15-75656445-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656445
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656445
    reference: chr 15
allele count: 1
allele frequency: 8.253821519363466e-6
allele num: 121156
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.206G>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.334G>C
  hgvsp: ENSP00000456667.2:p.Glu112Gln
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.*24G>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.685G>C
  hgvsp: ENSP00000457788.1:p.Glu229Gln
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.581G>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*240G>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+384G>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.685G>C
  hgvsp: ENSP00000455998.1:p.Glu229Gln
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.685G>C
  hgvsp: ENSP00000267978.4:p.Glu229Gln
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+384G>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.*24G>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+384G>C
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu229Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

15-75656445-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656445
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656445
    reference: chr 15
allele count: 131
allele frequency: 1.081250619036614e-3
allele num: 121156
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*240G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.685G>A
  hgvsp: ENSP00000455998.1:p.Glu229Lys
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.334G>A
  hgvsp: ENSP00000456667.2:p.Glu112Lys
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.*24G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+384G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.685G>A
  hgvsp: ENSP00000457788.1:p.Glu229Lys
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.581G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+384G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.206G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.685G>A
  hgvsp: ENSP00000267978.4:p.Glu229Lys
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.*24G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+384G>A
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 27182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6379
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
hgvs: p.Glu229Lys
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

15-75656446-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656446
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656446
    reference: chr 15
allele count: 2
allele frequency: 1.651009592365732e-5
allele num: 121138
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.684C>T
  hgvsp: ENST00000565683.1:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+383C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.684C>T
  hgvsp: ENST00000569482.1:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+383C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.580C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.333C>T
  hgvsp: ENST00000570257.2:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*239C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+383C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.684C>T
  hgvsp: ENST00000267978.5:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.*23C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.*23C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.205C>T
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro228Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

15-75656448-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656448
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656448
    reference: chr 15
allele count: 1
allele frequency: 8.254094030639197e-6
allele num: 121152
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.578C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.331C>T
  hgvsp: ENSP00000456667.2:p.Pro111Ser
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+381C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+381C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*237C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.682C>T
  hgvsp: ENSP00000267978.4:p.Pro228Ser
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.203C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.682C>T
  hgvsp: ENSP00000457788.1:p.Pro228Ser
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.682C>T
  hgvsp: ENSP00000455998.1:p.Pro228Ser
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.*21C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.*21C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+381C>T
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro228Ser
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD

15-75656448-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656448
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656448
    reference: chr 15
allele count: 1
allele frequency: 8.254094030639197e-6
allele num: 121152
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*237C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.*21C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.578C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.*21C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.682C>G
  hgvsp: ENSP00000267978.4:p.Pro228Ala
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+381C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.331C>G
  hgvsp: ENSP00000456667.2:p.Pro111Ala
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.682C>G
  hgvsp: ENSP00000455998.1:p.Pro228Ala
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.682C>G
  hgvsp: ENSP00000457788.1:p.Pro228Ala
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+381C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+381C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.203C>G
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro228Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

15-75656451-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656451
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656451
    reference: chr 15
allele count: 2
allele frequency: 1.650927821435647e-5
allele num: 121144
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.679C>T
  hgvsp: ENSP00000455998.1:p.Gln227Ter
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.*18C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.328C>T
  hgvsp: ENSP00000456667.2:p.Gln110Ter
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.575C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.679C>T
  hgvsp: ENSP00000267978.4:p.Gln227Ter
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.679C>T
  hgvsp: ENSP00000457788.1:p.Gln227Ter
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.200C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.*18C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+378C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+378C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*234C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+378C>T
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln227Ter
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

15-75656453-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656453
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656453
    reference: chr 15
allele count: 2
allele frequency: 1.651200422707308e-5
allele num: 121124
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.573C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+376C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.*16C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.677C>G
  hgvsp: ENSP00000267978.4:p.Ala226Gly
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.326C>G
  hgvsp: ENSP00000456667.2:p.Ala109Gly
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+376C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.*16C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*232C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.677C>G
  hgvsp: ENSP00000455998.1:p.Ala226Gly
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.198C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+376C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.677C>G
  hgvsp: ENSP00000457788.1:p.Ala226Gly
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24617
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala226Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

15-75656466-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656466
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656466
    reference: chr 15
allele count: 2
allele frequency: 1.652783287055401e-5
allele num: 121008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.313G>A
  hgvsp: ENSP00000456667.2:p.Val105Met
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.*3G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.664G>A
  hgvsp: ENSP00000267978.4:p.Val222Met
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*219G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.185G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.664G>A
  hgvsp: ENSP00000455998.1:p.Val222Met
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+363G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.538G>A
  hgvsp: ENSP00000456257.1:p.Val180Met
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.664G>A
  hgvsp: ENSP00000457788.1:p.Val222Met
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.*3G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+363G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+363G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.560G>A
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val222Met
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-75656475-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656475
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656475
    reference: chr 15
allele count: 18
allele frequency: 1.488833746898263e-4
allele num: 120900
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.176A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+354A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.655A>G
  hgvsp: ENSP00000457788.1:p.Met219Val
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*210A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.529A>G
  hgvsp: ENSP00000456257.1:p.Met177Val
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.304A>G
  hgvsp: ENSP00000456667.2:p.Met102Val
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.655A>G
  hgvsp: ENSP00000267978.4:p.Met219Val
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+354A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.551A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228A>G
  hgvsp: ENST00000566634.1:c.228A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+354A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.655A>G
  hgvsp: ENSP00000455998.1:p.Met219Val
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228A>G
  hgvsp: ENST00000565784.1:c.228A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6371
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Met219Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

15-75656478-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656478
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656478
    reference: chr 15
allele count: 1
allele frequency: 8.274309922552459e-6
allele num: 120856
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.548C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.301C>T
  hgvsp: ENSP00000456667.2:p.Gln101Ter
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.652C>T
  hgvsp: ENSP00000267978.4:p.Gln218Ter
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.652C>T
  hgvsp: ENSP00000457788.1:p.Gln218Ter
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.173C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+351C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+351C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.526C>T
  hgvsp: ENSP00000456257.1:p.Gln176Ter
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*207C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.652C>T
  hgvsp: ENSP00000455998.1:p.Gln218Ter
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-3C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+351C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-3C>T
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln218Ter
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ

15-75656486-GTGTAC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656486
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656481
    reference: chr 15
allele count: 93
allele frequency: 7.701480671767863e-4
allele num: 120756
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.639_643delGTACA
  hgvsp: ENSP00000455998.1:p.Tyr214SerfsTer9
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-16_228-12delGTACA
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.288_292delGTACA
  hgvsp: ENSP00000456667.2:p.Tyr97SerfsTer9
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.160_164delGTACA
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+338_600+342delGTACA
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.535_539delGTACA
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.639_643delGTACA
  hgvsp: ENSP00000267978.4:p.Tyr214SerfsTer9
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*194_*198delGTACA
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.513_517delGTACA
  hgvsp: ENSP00000456257.1:p.Tyr172SerfsTer9
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.639_643delGTACA
  hgvsp: ENSP00000457788.1:p.Tyr214SerfsTer9
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+338_622+342delGTACA
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.992_996delGTACA
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-16_228-12delGTACA
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+338_600+342delGTACA
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24575
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 6358
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26798
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Tyr214SerfsTer9
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: GTGTAC
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD

15-75656487-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656487
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656487
    reference: chr 15
allele count: 2
allele frequency: 1.658897496723677e-5
allele num: 120562
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.643A>G
  hgvsp: ENSP00000455998.1:p.Thr215Ala
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.643A>G
  hgvsp: ENSP00000267978.4:p.Thr215Ala
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*198A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.517A>G
  hgvsp: ENSP00000456257.1:p.Thr173Ala
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.996A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.643A>G
  hgvsp: ENSP00000457788.1:p.Thr215Ala
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+342A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.539A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-12A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+342A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.292A>G
  hgvsp: ENSP00000456667.2:p.Thr98Ala
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.164A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+342A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-12A>G
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr215Ala
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

15-75656495-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656495
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656495
    reference: chr 15
allele count: 1
allele frequency: 8.296414289743973e-6
allele num: 120534
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.988C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+334C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.635C>T
  hgvsp: ENSP00000455998.1:p.Ala212Val
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-20C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.635C>T
  hgvsp: ENSP00000457788.1:p.Ala212Val
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.509C>T
  hgvsp: ENSP00000456257.1:p.Ala170Val
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+334C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.531C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.156C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.635C>T
  hgvsp: ENSP00000267978.4:p.Ala212Val
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-20C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+334C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.284C>T
  hgvsp: ENSP00000456667.2:p.Ala95Val
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*190C>T
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala212Val
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

15-75656496-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656496
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656496
    reference: chr 15
allele count: 2
allele frequency: 1.659916340216453e-5
allele num: 120488
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+333G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.634G>A
  hgvsp: ENSP00000455998.1:p.Ala212Thr
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-21G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.634G>A
  hgvsp: ENSP00000267978.4:p.Ala212Thr
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.530G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.155G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.634G>A
  hgvsp: ENSP00000457788.1:p.Ala212Thr
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.987G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.283G>A
  hgvsp: ENSP00000456667.2:p.Ala95Thr
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+333G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.508G>A
  hgvsp: ENSP00000456257.1:p.Ala170Thr
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*189G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+333G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-21G>A
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala212Thr
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

15-75656507-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656507
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656507
    reference: chr 15
allele count: 5
allele frequency: 4.170141784820684e-5
allele num: 119900
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.623G>A
  hgvsp: ENSP00000455998.1:p.Arg208His
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.623G>A
  hgvsp: ENSP00000457788.1:p.Arg208His
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*178G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+322G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-32G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.623G>A
  hgvsp: ENSP00000267978.4:p.Arg208His
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+322G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.144G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.519G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.976G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.497G>A
  hgvsp: ENSP00000456257.1:p.Arg166His
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.272G>A
  hgvsp: ENSP00000456667.2:p.Arg91His
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+322G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-32G>A
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24388
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6280
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg208His
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

15-75656523-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656523
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656523
    reference: chr 15
allele count: 49
allele frequency: 4.18031668031668e-4
allele num: 117216
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.607G>A
  hgvsp: ENSP00000457788.1:p.Gly203Arg
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.503G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.607G>A
  hgvsp: ENSP00000267978.4:p.Gly203Arg
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+306G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.256G>A
  hgvsp: ENSP00000456667.2:p.Gly86Arg
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.481G>A
  hgvsp: ENSP00000456257.1:p.Gly161Arg
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*162G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.128G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+306G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-48G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.960G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.607G>A
  hgvsp: ENSP00000455998.1:p.Gly203Arg
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-48G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+306G>A
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23612
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23201
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly203Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

15-75656524-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656524
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656524
    reference: chr 15
allele count: 1
allele frequency: 8.530967411704487e-6
allele num: 117220
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.606C>T
  hgvsp: ENST00000565683.1:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.255C>T
  hgvsp: ENST00000570257.2:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.127C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-49C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.480C>T
  hgvsp: ENST00000568374.1:c.480C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.606C>T
  hgvsp: ENST00000569482.1:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-49C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.606C>T
  hgvsp: ENST00000267978.5:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*161C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.502C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+305C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+305C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+305C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.959C>T
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu202Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum

15-75656524-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656524
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656524
    reference: chr 15
allele count: 2
allele frequency: 1.706193482340897e-5
allele num: 117220
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.606C>A
  hgvsp: ENST00000565683.1:c.606C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-49C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.959C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*161C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.480C>A
  hgvsp: ENST00000568374.1:c.480C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.606C>A
  hgvsp: ENST00000267978.5:c.606C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+305C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.127C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.606C>A
  hgvsp: ENST00000569482.1:c.606C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.255C>A
  hgvsp: ENST00000570257.2:c.255C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-49C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.502C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+305C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+305C>A
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu202Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD

15-75656527-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656527
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656527
    reference: chr 15
allele count: 6
allele frequency: 5.14827018121911e-5
allele num: 116544
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.956C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-52C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.603C>A
  hgvsp: ENST00000569482.1:c.603C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+302C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.603C>A
  hgvsp: ENST00000565683.1:c.603C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*158C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.252C>A
  hgvsp: ENST00000570257.2:c.252C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-52C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.124C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.603C>A
  hgvsp: ENST00000267978.5:c.603C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.499C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+302C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.477C>A
  hgvsp: ENST00000568374.1:c.477C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+302C>A
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4046
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.603C>A
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

15-75656528-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656528
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656528
    reference: chr 15
allele count: 1
allele frequency: 8.6071852782703e-6
allele num: 116182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.498G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.955G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+301G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.602G>A
  hgvsp: ENSP00000457788.1:p.Gly201Asp
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.251G>A
  hgvsp: ENSP00000456667.2:p.Gly84Asp
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.476G>A
  hgvsp: ENSP00000456257.1:p.Gly159Asp
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.123G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-53G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.602G>A
  hgvsp: ENSP00000267978.4:p.Gly201Asp
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+301G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.602G>A
  hgvsp: ENSP00000455998.1:p.Gly201Asp
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*157G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-53G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+301G>A
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly201Asp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

15-75656531-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656531
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656531
    reference: chr 15
allele count: 132
allele frequency: 1.149685578413782e-3
allele num: 114814
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.601-2A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.250-2A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+298A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+298A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+298A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.122-2A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-56A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.497-2A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.601-2A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.475-2A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.954-2A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*156-2A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.601-2A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-56A>G
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6068
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20991
  bin: 2.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 21677
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.601-2A>G
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

15-75656537-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656537
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656536
    reference: chr 15
allele count: 3
allele frequency: 2.658914453858971e-5
allele num: 112828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.475-9delC
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-63delC
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.122-9delC
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+291delC
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.601-9delC
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+291delC
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.601-9delC
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.954-9delC
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+291delC
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.250-9delC
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*156-9delC
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.601-9delC
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.497-9delC
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-63delC
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20188
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8817
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: AG
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD

15-75656538-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656538
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656538
    reference: chr 15
allele count: 1
allele frequency: 8.882730195953028e-6
allele num: 112578
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+291C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.601-9C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.250-9C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+291C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+291C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-63C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.601-9C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.475-9C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.122-9C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*156-9C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.601-9C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.954-9C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-63C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.497-9C>T
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19982
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum

15-75656540-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656540
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656540
    reference: chr 15
allele count: 1
allele frequency: 8.937508937508938e-6
allele num: 111888
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.601-11C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-65C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+289C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.250-11C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-65C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.475-11C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*156-11C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.954-11C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+289C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.601-11C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+289C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.497-11C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.601-11C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.122-11C>T
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4428
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

15-75656540-GTTCTGCCCCTTAATCCCTTTTTCAAGCACAGCT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656540
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656507
    reference: chr 15
allele count: 2
allele frequency: 1.787501787501788e-5
allele num: 111888
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18015
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: GTTCTGCCCCTTAATCCCTTTTTCAAGCACAGCT
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

15-75656545-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656545
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656545
    reference: chr 15
allele count: 1
allele frequency: 9.119428029473991e-6
allele num: 109656
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-70C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.497-16C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+284C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.601-16C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.954-16C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*156-16C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.601-16C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.475-16C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+284C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.122-16C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.601-16C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+284C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.250-16C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-70C>T
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16505
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD

15-75656560-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656560
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656560
    reference: chr 15
allele count: 5
allele frequency: 4.80686035109308e-5
allele num: 104018
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.601-31A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*156-31A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.475-31A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+269A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.601-31A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+269A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.601-31A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.122-31A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-85A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+269A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-85A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.497-31A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.250-31A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.954-31A>G
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8442
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7337
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8688
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

15-75656561-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656561
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656561
    reference: chr 15
allele count: 1
allele frequency: 9.668935643564357e-6
allele num: 103424
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.122-32A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.601-32A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*156-32A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.601-32A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.497-32A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.601-32A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-86A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.250-32A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.954-32A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.475-32A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+268A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+268A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-86A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+268A>G
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9342
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

15-75656563-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656563
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656563
    reference: chr 15
allele count: 2
allele frequency: 1.960822761230612e-5
allele num: 101998
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.497-34G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*156-34G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+266G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.250-34G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.122-34G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-88G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+266G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+266G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.954-34G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.601-34G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.601-34G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.601-34G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.475-34G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-88G>A
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7842
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10682
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

15-75656571-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656571
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656571
    reference: chr 15
allele count: 1
allele frequency: 1.038464733737642e-5
allele num: 96296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-96C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.601-42C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*156-42C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-96C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.601-42C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.250-42C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.601-42C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.954-42C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.122-42C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+258C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.475-42C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.497-42C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+258C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+258C>A
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23459
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

15-75656797-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656797
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656797
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 19642
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.600+32C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-322C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-322C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+32C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+32C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.600+32C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.496+32C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.953+32C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+32C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*155+32C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.121+32C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.600+32C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.474+32C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.249+32C>T
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27971
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21734
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

15-75656800-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656800
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656800
    reference: chr 15
allele count: 1
allele frequency: 4.971661529283086e-5
allele num: 20114
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.600+29A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.600+29A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.953+29A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.249+29A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-325A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.496+29A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.121+29A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+29A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-325A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.600+29A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+29A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.474+29A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*155+29A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+29A>G
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20410
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5382
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28915
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

15-75656801-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656801
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656801
    reference: chr 15
allele count: 1
allele frequency: 4.785146904009953e-5
allele num: 20898
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.474+28T>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+28T>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.600+28T>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.600+28T>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-326T>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+28T>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*155+28T>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.953+28T>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+28T>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.121+28T>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-326T>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.496+28T>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.600+28T>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.249+28T>C
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19911
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29449
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff

15-75656806-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656806
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656806
    reference: chr 15
allele count: 1
allele frequency: 4.55083280240284e-5
allele num: 21974
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.121+23C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+23C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.600+23C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+23C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+23C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.953+23C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.474+23C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.496+23C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-331C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*155+23C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.600+23C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-331C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.600+23C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.249+23C>G
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5507
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

15-75656809-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656809
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656809
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 22874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.600+20C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.249+20C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-334C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+20C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.600+20C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+20C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-334C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+20C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.600+20C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*155+20C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.953+20C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.121+20C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.474+20C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.496+20C>T
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32407
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

15-75656817-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656817
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656817
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 26006
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.496+12C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.249+12C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.600+12C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.474+12C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*155+12C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-342C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.121+12C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.600+12C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+12C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-342C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+12C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+12C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.953+12C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.600+12C>G
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34897
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

15-75656818-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656818
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656818
    reference: chr 15
allele count: 1
allele frequency: 3.793626707132018e-5
allele num: 26360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.474+11C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.600+11C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.600+11C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.600+11C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.249+11C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.121+11C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.496+11C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+11C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-343C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+11C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+11C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.953+11C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-343C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*155+11C>A
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5888
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35035
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/15-75656827-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656827
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656826
    reference: chr 15
allele count: 10
allele frequency: 3.259027506192152e-4
allele num: 30684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.600+1delG
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.600+1delG
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.622+1delG
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.600+1delG
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-353delG
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*155+1delG
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.121+1delG
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.953+1delG
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.249+1delG
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-353delG
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.496+1delG
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.474+1delG
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.600+1delG
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.600+1delG
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.600+1delG
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: AC
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/15-75656860-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656860
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656860
    reference: chr 15
allele count: 2
allele frequency: 3.852376916557516e-5
allele num: 51916
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.465T>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.569T>G
  hgvsp: ENSP00000457788.1:p.Val190Gly
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.443T>G
  hgvsp: ENSP00000456257.1:p.Val148Gly
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.218T>G
  hgvsp: ENSP00000456667.2:p.Val73Gly
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-385T>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455788
  ensembl transcript: ENST00000566256
  gene symbol: MAN2C1
  hgvsc: ENST00000566256.1:c.530T>G
  hgvsp: ENSP00000455788.1:p.Val177Gly
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.922T>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.569T>G
  hgvsp: ENSP00000390738.2:p.Val190Gly
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.90T>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.569T>G
  hgvsp: ENSP00000455998.1:p.Val190Gly
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.569T>G
  hgvsp: ENSP00000454589.1:p.Val190Gly
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*124T>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-385T>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.591T>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.569T>G
  hgvsp: ENSP00000267978.4:p.Val190Gly
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7564
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val190Gly
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ

15-75656865-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656865
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656865
    reference: chr 15
allele count: 2
allele frequency: 3.632401017072285e-5
allele num: 55060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.564C>T
  hgvsp: ENST00000563622.1:c.564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-390C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-390C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.438C>T
  hgvsp: ENST00000568374.1:c.438C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455788
  ensembl transcript: ENST00000566256
  gene symbol: MAN2C1
  hgvsc: ENST00000566256.1:c.525C>T
  hgvsp: ENST00000566256.1:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*119C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.917C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.213C>T
  hgvsp: ENST00000570257.2:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.564C>T
  hgvsp: ENST00000421803.2:c.564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.564C>T
  hgvsp: ENST00000565683.1:c.564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.564C>T
  hgvsp: ENST00000569482.1:c.564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.564C>T
  hgvsp: ENST00000267978.5:c.564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.460C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.586C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.85C>T
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30890
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu188Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

15-75656870-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656870
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656870
    reference: chr 15
allele count: 9
allele frequency: 1.532749753056984e-4
allele num: 58718
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-395A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.581A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.559A>G
  hgvsp: ENSP00000457788.1:p.Met187Val
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.559A>G
  hgvsp: ENSP00000267978.4:p.Met187Val
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*114A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.559A>G
  hgvsp: ENSP00000390738.2:p.Met187Val
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-395A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.455A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.208A>G
  hgvsp: ENSP00000456667.2:p.Met70Val
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455803
  ensembl transcript: ENST00000562071
  gene symbol: MAN2C1
  hgvsc: ENST00000562071.1:c.*300A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.912A>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455788
  ensembl transcript: ENST00000566256
  gene symbol: MAN2C1
  hgvsc: ENST00000566256.1:c.520A>G
  hgvsp: ENSP00000455788.1:p.Met174Val
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.433A>G
  hgvsp: ENSP00000456257.1:p.Met145Val
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.559A>G
  hgvsp: ENSP00000455998.1:p.Met187Val
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.559A>G
  hgvsp: ENSP00000454589.1:p.Met187Val
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.80A>G
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7524
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met187Val
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

15-75656871-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656871
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656871
    reference: chr 15
allele count: 1
allele frequency: 1.687194196051966e-5
allele num: 59270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455803
  ensembl transcript: ENST00000562071
  gene symbol: MAN2C1
  hgvsc: ENST00000562071.1:c.*299C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455788
  ensembl transcript: ENST00000566256
  gene symbol: MAN2C1
  hgvsc: ENST00000566256.1:c.519C>T
  hgvsp: ENST00000566256.1:c.519C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.558C>T
  hgvsp: ENST00000267978.5:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.558C>T
  hgvsp: ENST00000563622.1:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.580C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.454C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.558C>T
  hgvsp: ENST00000565683.1:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.79C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*113C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.558C>T
  hgvsp: ENST00000421803.2:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-396C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.432C>T
  hgvsp: ENST00000568374.1:c.432C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.558C>T
  hgvsp: ENST00000569482.1:c.558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.207C>T
  hgvsp: ENST00000570257.2:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.911C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-396C>T
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His186His
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

15-75656876-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656876
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656876
    reference: chr 15
allele count: 1
allele frequency: 1.596831885539091e-5
allele num: 62624
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.906G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.575G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.553G>A
  hgvsp: ENSP00000454589.1:p.Val185Ile
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.202G>A
  hgvsp: ENSP00000456667.2:p.Val68Ile
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.449G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.427G>A
  hgvsp: ENSP00000456257.1:p.Val143Ile
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.553G>A
  hgvsp: ENSP00000457788.1:p.Val185Ile
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455803
  ensembl transcript: ENST00000562071
  gene symbol: MAN2C1
  hgvsc: ENST00000562071.1:c.*294G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.553G>A
  hgvsp: ENSP00000267978.4:p.Val185Ile
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-401G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.553G>A
  hgvsp: ENSP00000455998.1:p.Val185Ile
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-401G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.553G>A
  hgvsp: ENSP00000390738.2:p.Val185Ile
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455788
  ensembl transcript: ENST00000566256
  gene symbol: MAN2C1
  hgvsc: ENST00000566256.1:c.514G>A
  hgvsp: ENSP00000455788.1:p.Val172Ile
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*108G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.74G>A
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val185Ile
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

15-75656881-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656881
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656881
    reference: chr 15
allele count: 1
allele frequency: 1.510300247689241e-5
allele num: 66212
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.548G>A
  hgvsp: ENSP00000455998.1:p.Arg183Gln
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.570G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.422G>A
  hgvsp: ENSP00000456257.1:p.Arg141Gln
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-406G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455788
  ensembl transcript: ENST00000566256
  gene symbol: MAN2C1
  hgvsc: ENST00000566256.1:c.509G>A
  hgvsp: ENSP00000455788.1:p.Arg170Gln
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.548G>A
  hgvsp: ENSP00000457788.1:p.Arg183Gln
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.197G>A
  hgvsp: ENSP00000456667.2:p.Arg66Gln
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-406G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.444G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.548G>A
  hgvsp: ENSP00000267978.4:p.Arg183Gln
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.548G>A
  hgvsp: ENSP00000390738.2:p.Arg183Gln
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.548G>A
  hgvsp: ENSP00000454589.1:p.Arg183Gln
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455803
  ensembl transcript: ENST00000562071
  gene symbol: MAN2C1
  hgvsc: ENST00000562071.1:c.*289G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*103G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.901G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.69G>A
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg183Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

15-75656882-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656882
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656882
    reference: chr 15
allele count: 3
allele frequency: 4.420215117135701e-5
allele num: 67870
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455788
  ensembl transcript: ENST00000566256
  gene symbol: MAN2C1
  hgvsc: ENST00000566256.1:c.508C>T
  hgvsp: ENSP00000455788.1:p.Arg170Trp
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.68C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-407C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.547C>T
  hgvsp: ENSP00000267978.4:p.Arg183Trp
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.547C>T
  hgvsp: ENSP00000390738.2:p.Arg183Trp
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.443C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-407C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.547C>T
  hgvsp: ENSP00000457788.1:p.Arg183Trp
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.547C>T
  hgvsp: ENSP00000454589.1:p.Arg183Trp
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455803
  ensembl transcript: ENST00000562071
  gene symbol: MAN2C1
  hgvsc: ENST00000562071.1:c.*288C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.196C>T
  hgvsp: ENSP00000456667.2:p.Arg66Trp
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.547C>T
  hgvsp: ENSP00000455998.1:p.Arg183Trp
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*102C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.569C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.421C>T
  hgvsp: ENSP00000456257.1:p.Arg141Trp
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.900C>T
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18149
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg183Trp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP

15-75656882-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656882
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656882
    reference: chr 15
allele count: 8
allele frequency: 1.178724031236187e-4
allele num: 67870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.547C>A
  hgvsp: ENST00000267978.5:c.547C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-407C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.443C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.68C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.547C>A
  hgvsp: ENST00000421803.2:c.547C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455803
  ensembl transcript: ENST00000562071
  gene symbol: MAN2C1
  hgvsc: ENST00000562071.1:c.*288C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.547C>A
  hgvsp: ENST00000569482.1:c.547C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.196C>A
  hgvsp: ENST00000570257.2:c.196C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.547C>A
  hgvsp: ENST00000565683.1:c.547C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.569C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455788
  ensembl transcript: ENST00000566256
  gene symbol: MAN2C1
  hgvsc: ENST00000566256.1:c.508C>A
  hgvsp: ENST00000566256.1:c.508C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.421C>A
  hgvsp: ENST00000568374.1:c.421C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*102C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-407C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.900C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.547C>A
  hgvsp: ENST00000563622.1:c.547C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7509
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Arg183Arg
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

15-75656896-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656896
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656896
    reference: chr 15
allele count: 1
allele frequency: 1.247473865422519e-5
allele num: 80162
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.533T>C
  hgvsp: ENSP00000454589.1:p.Leu178Pro
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*88T>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.54T>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455803
  ensembl transcript: ENST00000562071
  gene symbol: MAN2C1
  hgvsc: ENST00000562071.1:c.*274T>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.533T>C
  hgvsp: ENSP00000390738.2:p.Leu178Pro
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.533T>C
  hgvsp: ENSP00000455998.1:p.Leu178Pro
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.182T>C
  hgvsp: ENSP00000456667.2:p.Leu61Pro
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.429T>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.533T>C
  hgvsp: ENSP00000267978.4:p.Leu178Pro
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.407T>C
  hgvsp: ENSP00000456257.1:p.Leu136Pro
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455788
  ensembl transcript: ENST00000566256
  gene symbol: MAN2C1
  hgvsc: ENST00000566256.1:c.494T>C
  hgvsp: ENSP00000455788.1:p.Leu165Pro
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-421T>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.555T>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-421T>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.533T>C
  hgvsp: ENSP00000457788.1:p.Leu178Pro
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.886T>C
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19926
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu178Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-75656897-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656897
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656897
    reference: chr 15
allele count: 1
allele frequency: 1.247349382562056e-5
allele num: 80170
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.532C>T
  hgvsp: ENST00000421803.2:c.532C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.554C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*87C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.532C>T
  hgvsp: ENST00000563622.1:c.532C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455803
  ensembl transcript: ENST00000562071
  gene symbol: MAN2C1
  hgvsc: ENST00000562071.1:c.*273C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.532C>T
  hgvsp: ENST00000565683.1:c.532C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.532C>T
  hgvsp: ENST00000569482.1:c.532C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455788
  ensembl transcript: ENST00000566256
  gene symbol: MAN2C1
  hgvsc: ENST00000566256.1:c.493C>T
  hgvsp: ENST00000566256.1:c.493C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.885C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-422C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.428C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.532C>T
  hgvsp: ENST00000267978.5:c.532C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.406C>T
  hgvsp: ENST00000568374.1:c.406C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.53C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-422C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.181C>T
  hgvsp: ENST00000570257.2:c.181C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu178Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum

15-75656904-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656904
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656904
    reference: chr 15
allele count: 1
allele frequency: 1.163656674734686e-5
allele num: 85936
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*80G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455788
  ensembl transcript: ENST00000566256
  gene symbol: MAN2C1
  hgvsc: ENST00000566256.1:c.486G>A
  hgvsp: ENST00000566256.1:c.486G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.46G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455803
  ensembl transcript: ENST00000562071
  gene symbol: MAN2C1
  hgvsc: ENST00000562071.1:c.*266G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.525G>A
  hgvsp: ENST00000563622.1:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.525G>A
  hgvsp: ENST00000569482.1:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.399G>A
  hgvsp: ENST00000568374.1:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.525G>A
  hgvsp: ENST00000267978.5:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.525G>A
  hgvsp: ENST00000421803.2:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.525G>A
  hgvsp: ENST00000565683.1:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.174G>A
  hgvsp: ENST00000570257.2:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.547G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-429G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-429G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.421G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.878G>A
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg175Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-75656905-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656905
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656905
    reference: chr 15
allele count: 3
allele frequency: 3.45097317443519e-5
allele num: 86932
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-430G>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.45G>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.524G>T
  hgvsp: ENSP00000457788.1:p.Arg175Leu
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455788
  ensembl transcript: ENST00000566256
  gene symbol: MAN2C1
  hgvsc: ENST00000566256.1:c.485G>T
  hgvsp: ENSP00000455788.1:p.Arg162Leu
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.546G>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.524G>T
  hgvsp: ENSP00000454589.1:p.Arg175Leu
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*79G>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.524G>T
  hgvsp: ENSP00000390738.2:p.Arg175Leu
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.524G>T
  hgvsp: ENSP00000455998.1:p.Arg175Leu
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.398G>T
  hgvsp: ENSP00000456257.1:p.Arg133Leu
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.173G>T
  hgvsp: ENSP00000456667.2:p.Arg58Leu
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.524G>T
  hgvsp: ENSP00000267978.4:p.Arg175Leu
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.420G>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-430G>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455803
  ensembl transcript: ENST00000562071
  gene symbol: MAN2C1
  hgvsc: ENST00000562071.1:c.*265G>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.877G>T
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7096
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26119
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6143
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg175Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

15-75656905-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656905
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656905
    reference: chr 15
allele count: 13
allele frequency: 1.495421708921916e-4
allele num: 86932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.524G>A
  hgvsp: ENSP00000267978.4:p.Arg175Gln
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.524G>A
  hgvsp: ENSP00000454589.1:p.Arg175Gln
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.45G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455788
  ensembl transcript: ENST00000566256
  gene symbol: MAN2C1
  hgvsc: ENST00000566256.1:c.485G>A
  hgvsp: ENSP00000455788.1:p.Arg162Gln
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.173G>A
  hgvsp: ENSP00000456667.2:p.Arg58Gln
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455803
  ensembl transcript: ENST00000562071
  gene symbol: MAN2C1
  hgvsc: ENST00000562071.1:c.*265G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.524G>A
  hgvsp: ENSP00000390738.2:p.Arg175Gln
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-430G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*79G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-430G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.524G>A
  hgvsp: ENSP00000457788.1:p.Arg175Gln
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.398G>A
  hgvsp: ENSP00000456257.1:p.Arg133Gln
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.546G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.420G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.524G>A
  hgvsp: ENSP00000455998.1:p.Arg175Gln
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.877G>A
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26119
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg175Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

15-75656913-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656913
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656913
    reference: chr 15
allele count: 22
allele frequency: 2.312867956265769e-4
allele num: 95120
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.165G>C
  hgvsp: ENSP00000456667.2:p.Gln55His
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.516G>C
  hgvsp: ENSP00000390738.2:p.Gln172His
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.412G>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.390G>C
  hgvsp: ENSP00000456257.1:p.Gln130His
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.37G>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-438G>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455788
  ensembl transcript: ENST00000566256
  gene symbol: MAN2C1
  hgvsc: ENST00000566256.1:c.477G>C
  hgvsp: ENSP00000455788.1:p.Gln159His
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.516G>C
  hgvsp: ENSP00000267978.4:p.Gln172His
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.516G>C
  hgvsp: ENSP00000454589.1:p.Gln172His
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.538G>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-438G>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455803
  ensembl transcript: ENST00000562071
  gene symbol: MAN2C1
  hgvsc: ENST00000562071.1:c.*257G>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*71G>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.516G>C
  hgvsp: ENSP00000457788.1:p.Gln172His
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.869G>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.516G>C
  hgvsp: ENSP00000455998.1:p.Gln172His
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12704
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8025
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln172His
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

15-75656917-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656917
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656917
    reference: chr 15
allele count: 4
allele frequency: 4.077222595967627e-5
allele num: 98106
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-442T>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455788
  ensembl transcript: ENST00000566256
  gene symbol: MAN2C1
  hgvsc: ENST00000566256.1:c.473T>A
  hgvsp: ENSP00000455788.1:p.Phe158Tyr
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.386T>A
  hgvsp: ENSP00000456257.1:p.Phe129Tyr
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.512T>A
  hgvsp: ENSP00000454589.1:p.Phe171Tyr
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.512T>A
  hgvsp: ENSP00000457788.1:p.Phe171Tyr
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.33T>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.161T>A
  hgvsp: ENSP00000456667.2:p.Phe54Tyr
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.865T>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.512T>A
  hgvsp: ENSP00000455998.1:p.Phe171Tyr
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.512T>A
  hgvsp: ENSP00000390738.2:p.Phe171Tyr
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.512T>A
  hgvsp: ENSP00000267978.4:p.Phe171Tyr
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455803
  ensembl transcript: ENST00000562071
  gene symbol: MAN2C1
  hgvsc: ENST00000562071.1:c.*253T>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*67T>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.408T>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.534T>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-442T>A
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe171Tyr
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

15-75656930-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656930
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656930
    reference: chr 15
allele count: 1
allele frequency: 9.569561139926123e-6
allele num: 104498
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.499C>T
  hgvsp: ENSP00000455998.1:p.Pro167Ser
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455788
  ensembl transcript: ENST00000566256
  gene symbol: MAN2C1
  hgvsc: ENST00000566256.1:c.460C>T
  hgvsp: ENSP00000455788.1:p.Pro154Ser
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.499C>T
  hgvsp: ENSP00000457788.1:p.Pro167Ser
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.20C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*54C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.499C>T
  hgvsp: ENSP00000267978.4:p.Pro167Ser
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.521C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.373C>T
  hgvsp: ENSP00000456257.1:p.Pro125Ser
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.499C>T
  hgvsp: ENSP00000390738.2:p.Pro167Ser
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-455C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.148C>T
  hgvsp: ENSP00000456667.2:p.Pro50Ser
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-455C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457833
  ensembl transcript: ENST00000561615
  gene symbol: MAN2C1
  hgvsc: ENST00000561615.1:c.547C>T
  hgvsp: ENST00000561615.1:c.547C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.499C>T
  hgvsp: ENSP00000454589.1:p.Pro167Ser
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.852C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455803
  ensembl transcript: ENST00000562071
  gene symbol: MAN2C1
  hgvsc: ENST00000562071.1:c.*240C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.395C>T
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro167Ser
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

15-75656930-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656930
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656930
    reference: chr 15
allele count: 1
allele frequency: 9.569561139926123e-6
allele num: 104498
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.373C>G
  hgvsp: ENSP00000456257.1:p.Pro125Ala
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.499C>G
  hgvsp: ENSP00000390738.2:p.Pro167Ala
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455788
  ensembl transcript: ENST00000566256
  gene symbol: MAN2C1
  hgvsc: ENST00000566256.1:c.460C>G
  hgvsp: ENSP00000455788.1:p.Pro154Ala
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.148C>G
  hgvsp: ENSP00000456667.2:p.Pro50Ala
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.499C>G
  hgvsp: ENSP00000267978.4:p.Pro167Ala
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457833
  ensembl transcript: ENST00000561615
  gene symbol: MAN2C1
  hgvsc: ENST00000561615.1:c.547C>G
  hgvsp: ENST00000561615.1:c.547C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.521C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.499C>G
  hgvsp: ENSP00000455998.1:p.Pro167Ala
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-455C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.20C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.499C>G
  hgvsp: ENSP00000454589.1:p.Pro167Ala
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-455C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.395C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.499C>G
  hgvsp: ENSP00000457788.1:p.Pro167Ala
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*54C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.852C>G
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455803
  ensembl transcript: ENST00000562071
  gene symbol: MAN2C1
  hgvsc: ENST00000562071.1:c.*240C>G
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro167Ala
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD

15-75656931-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656931
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656931
    reference: chr 15
allele count: 4
allele frequency: 3.813228088238098e-5
allele num: 104898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455803
  ensembl transcript: ENST00000562071
  gene symbol: MAN2C1
  hgvsc: ENST00000562071.1:c.*239C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.372C>T
  hgvsp: ENST00000568374.1:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.394C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.851C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.498C>T
  hgvsp: ENST00000565683.1:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.498C>T
  hgvsp: ENST00000421803.2:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*53C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.19C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.498C>T
  hgvsp: ENST00000267978.5:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.147C>T
  hgvsp: ENST00000570257.2:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-456C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455788
  ensembl transcript: ENST00000566256
  gene symbol: MAN2C1
  hgvsc: ENST00000566256.1:c.459C>T
  hgvsp: ENST00000566256.1:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-456C>T
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.498C>T
  hgvsp: ENST00000563622.1:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457833
  ensembl transcript: ENST00000561615
  gene symbol: MAN2C1
  hgvsc: ENST00000561615.1:c.546C>T
  hgvsp: ENST00000561615.1:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.498C>T
  hgvsp: ENST00000569482.1:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.520C>T
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35746
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9562
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Asp166Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-75656939-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656939
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656939
    reference: chr 15
allele count: 5
allele frequency: 4.631602349148711e-5
allele num: 107954
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.490G>A
  hgvsp: ENSP00000390738.2:p.Ala164Thr
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457833
  ensembl transcript: ENST00000561615
  gene symbol: MAN2C1
  hgvsc: ENST00000561615.1:c.538G>A
  hgvsp: ENSP00000457833.1:p.Ala180Thr
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.490G>A
  hgvsp: ENSP00000457788.1:p.Ala164Thr
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-464G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.364G>A
  hgvsp: ENSP00000456257.1:p.Ala122Thr
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-464G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.843G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455788
  ensembl transcript: ENST00000566256
  gene symbol: MAN2C1
  hgvsc: ENST00000566256.1:c.451G>A
  hgvsp: ENSP00000455788.1:p.Ala151Thr
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.490G>A
  hgvsp: ENSP00000454589.1:p.Ala164Thr
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.490G>A
  hgvsp: ENSP00000455998.1:p.Ala164Thr
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.11G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.139G>A
  hgvsp: ENSP00000456667.2:p.Ala47Thr
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.386G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.490G>A
  hgvsp: ENSP00000267978.4:p.Ala164Thr
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455803
  ensembl transcript: ENST00000562071
  gene symbol: MAN2C1
  hgvsc: ENST00000562071.1:c.*231G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.512G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*45G>A
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala164Thr
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD

15-75656949-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656949
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656949
    reference: chr 15
allele count: 1
allele frequency: 9.054854307394194e-6
allele num: 110438
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565699
  gene symbol: MAN2C1
  hgvsc: ENST00000565699.1:n.1C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.480C>A
  hgvsp: ENSP00000454589.1:p.Ser160Arg
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.502C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.376C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.480C>A
  hgvsp: ENSP00000457788.1:p.Ser160Arg
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.354C>A
  hgvsp: ENSP00000456257.1:p.Ser118Arg
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457833
  ensembl transcript: ENST00000561615
  gene symbol: MAN2C1
  hgvsc: ENST00000561615.1:c.528C>A
  hgvsp: ENSP00000457833.1:p.Ser176Arg
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.480C>A
  hgvsp: ENSP00000390738.2:p.Ser160Arg
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455803
  ensembl transcript: ENST00000562071
  gene symbol: MAN2C1
  hgvsc: ENST00000562071.1:c.*221C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*35C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.833C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455788
  ensembl transcript: ENST00000566256
  gene symbol: MAN2C1
  hgvsc: ENST00000566256.1:c.441C>A
  hgvsp: ENSP00000455788.1:p.Ser147Arg
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.129C>A
  hgvsp: ENSP00000456667.2:p.Ser43Arg
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-474C>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.480C>A
  hgvsp: ENSP00000267978.4:p.Ser160Arg
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.480C>A
  hgvsp: ENSP00000455998.1:p.Ser160Arg
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-474C>A
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5320
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser160Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-75656950-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656950
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656950
    reference: chr 15
allele count: 1
allele frequency: 9.048136083966702e-6
allele num: 110520
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.479G>A
  hgvsp: ENSP00000457788.1:p.Ser160Asn
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457833
  ensembl transcript: ENST00000561615
  gene symbol: MAN2C1
  hgvsc: ENST00000561615.1:c.527G>A
  hgvsp: ENSP00000457833.1:p.Ser176Asn
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455803
  ensembl transcript: ENST00000562071
  gene symbol: MAN2C1
  hgvsc: ENST00000562071.1:c.*220G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455788
  ensembl transcript: ENST00000566256
  gene symbol: MAN2C1
  hgvsc: ENST00000566256.1:c.440G>A
  hgvsp: ENSP00000455788.1:p.Ser147Asn
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.375G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.501G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.479G>A
  hgvsp: ENSP00000267978.4:p.Ser160Asn
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-475G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.128G>A
  hgvsp: ENSP00000456667.2:p.Ser43Asn
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.479G>A
  hgvsp: ENSP00000454589.1:p.Ser160Asn
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.479G>A
  hgvsp: ENSP00000455998.1:p.Ser160Asn
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.479G>A
  hgvsp: ENSP00000390738.2:p.Ser160Asn
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.832G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*34G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-475G>A
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.353G>A
  hgvsp: ENSP00000456257.1:p.Ser118Asn
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser160Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

15-75656955-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75656955
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 75656955
    reference: chr 15
allele count: 1
allele frequency: 8.991026955098812e-6
allele num: 111222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455788
  ensembl transcript: ENST00000566256
  gene symbol: MAN2C1
  hgvsc: ENST00000566256.1:c.435G>C
  hgvsp: ENSP00000455788.1:p.Lys145Asn
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563441
  gene symbol: MAN2C1
  hgvsc: ENST00000563441.1:n.370G>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000267978
  ensembl transcript: ENST00000267978
  gene symbol: MAN2C1
  hgvsc: ENST00000267978.5:c.474G>C
  hgvsp: ENSP00000267978.4:p.Lys158Asn
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455998
  ensembl transcript: ENST00000569482
  gene symbol: MAN2C1
  hgvsc: ENST00000569482.1:c.474G>C
  hgvsp: ENSP00000455998.1:p.Lys158Asn
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454589
  ensembl transcript: ENST00000563622
  gene symbol: MAN2C1
  hgvsc: ENST00000563622.1:c.474G>C
  hgvsp: ENSP00000454589.1:p.Lys158Asn
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000390738
  ensembl transcript: ENST00000421803
  gene symbol: MAN2C1
  hgvsc: ENST00000421803.2:c.474G>C
  hgvsp: ENSP00000390738.2:p.Lys158Asn
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457833
  ensembl transcript: ENST00000561615
  gene symbol: MAN2C1
  hgvsc: ENST00000561615.1:c.522G>C
  hgvsp: ENSP00000457833.1:p.Lys174Asn
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000563539
  gene symbol: MAN2C1
  hgvsc: ENST00000563539.1:n.496G>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000454406
  ensembl transcript: ENST00000569355
  gene symbol: MAN2C1
  hgvsc: ENST00000569355.1:c.*29G>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456419
  ensembl transcript: ENST00000565784
  gene symbol: MAN2C1
  hgvsc: ENST00000565784.1:c.228-480G>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140400
  ensembl transcript: ENST00000565534
  gene symbol: MAN2C1
  hgvsc: ENST00000565534.1:n.827G>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456257
  ensembl transcript: ENST00000568374
  gene symbol: MAN2C1
  hgvsc: ENST00000568374.1:c.348G>C
  hgvsp: ENSP00000456257.1:p.Lys116Asn
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000457788
  ensembl transcript: ENST00000565683
  gene symbol: MAN2C1
  hgvsc: ENST00000565683.1:c.474G>C
  hgvsp: ENSP00000457788.1:p.Lys158Asn
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456667
  ensembl transcript: ENST00000570257
  gene symbol: MAN2C1
  hgvsc: ENST00000570257.2:c.123G>C
  hgvsp: ENSP00000456667.2:p.Lys41Asn
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000455803
  ensembl transcript: ENST00000562071
  gene symbol: MAN2C1
  hgvsc: ENST00000562071.1:c.*215G>C
  variant of: http://identifiers.org/hgnc/6827
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140400
  ensembl protein: ENSP00000456914
  ensembl transcript: ENST00000566634
  gene symbol: MAN2C1
  hgvsc: ENST00000566634.1:c.228-480G>C
  variant of: http://identifiers.org/hgnc/6827
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys158Asn
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 1171
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6276
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49789
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1273
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.171e-1

QD
type: SiteQuality
SIO_000300: 2.09e0

MQRankSum
type: SiteQuality
SIO_000300: -3.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.409e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e0

DP
type: SiteQuality
SIO_000300: 1.562333e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

GenotypeDepth
all individuals: 9
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6267
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49704
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.923816852635629e-4
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.318e1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.27e-1

DP
type: SiteQuality
SIO_000300: 1.56194e6

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

FS
type: SiteQuality
SIO_000300: 2.865e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.277e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

GenotypeDepth
all individuals: 431
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 966
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 156
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49623
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6255
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.527e0

DP
type: SiteQuality
SIO_000300: 1.561444e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.209e0

FS
type: SiteQuality
SIO_000300: 1.323e0

MQRankSum
type: SiteQuality
SIO_000300: -7.45e-1

MQ
type: SiteQuality
SIO_000300: 5.799e1

QD
type: SiteQuality
SIO_000300: 1.54e1

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6402
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1007
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 966
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49644
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6256
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.89e-1

QD
type: SiteQuality
SIO_000300: 1.428e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.27e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

FS
type: SiteQuality
SIO_000300: 8.82e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.77e-1

DP
type: SiteQuality
SIO_000300: 1.561521e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.857e0

VQSLOD
type: SiteQuality
SIO_000300: 4.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeDepth
all individuals: 130
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6250
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49606
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 966
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501005673801447e-5
allele num: 66622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 1.561106e6

QD
type: SiteQuality
SIO_000300: 1.602e1

GenotypeDepth
all individuals: 7
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 124
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1151
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49453
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6216
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-2

DP
type: SiteQuality
SIO_000300: 1.566341e6

MQRankSum
type: SiteQuality
SIO_000300: 1.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 1.272e1

VQSLOD
type: SiteQuality
SIO_000300: 6.05e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

GenotypeDepth
all individuals: 244
bin: 4.75e1
variant carriers: 6

GenotypeDepth
all individuals: 24531
bin: 2.75e1
variant carriers: 3

GenotypeDepth
all individuals: 11
bin: 8.75e1
variant carriers: 8

GenotypeQuality
all individuals: 6216
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49453
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 9.75e1
variant carriers: 131

GenotypeQuality
all individuals: 1246
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 3
allele frequency: 3.325942350332594e-3
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.810467577448528e-4
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.124956732433368e-3
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 91
allele frequency: 1.365997177939896e-3
allele num: 66618
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.312673450508788e-4
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 17
allele frequency: 1.03030303030303e-3
allele num: 16500
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.05e-1

QD
type: SiteQuality
SIO_000300: 1.272e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

DP
type: SiteQuality
SIO_000300: 1.566341e6

GenotypeDepth
all individuals: 8
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1248
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1153
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6226
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 49444
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501321162623108e-5
allele num: 66608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.624639076034648e-5
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.560672e6

FS
type: SiteQuality
SIO_000300: 5.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.166e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: 7.38e-1

QD
type: SiteQuality
SIO_000300: 1.43e1

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1252
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6242
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49543
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501185936890143e-5
allele num: 66614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.560352e6

FS
type: SiteQuality
SIO_000300: 1.364e0

VQSLOD
type: SiteQuality
SIO_000300: 5.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.159999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e-1

QD
type: SiteQuality
SIO_000300: 1.529e1

GenotypeDepth
all individuals: 158
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 429
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6242
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49543
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1252
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1161
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501185936890143e-5
allele num: 66614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

FS
type: SiteQuality
SIO_000300: 1.364e0

DP
type: SiteQuality
SIO_000300: 1.560352e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.529e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.159999999999999e-1

GenotypeDepth
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 67
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6238
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 223
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1158
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49581
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002191599867904e-5
allele num: 66618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.603e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.0801e1

MQRankSum
type: SiteQuality
SIO_000300: -4.36e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: -8.556e-1

DP
type: SiteQuality
SIO_000300: 1.560267e6

QD
type: SiteQuality
SIO_000300: 1.456e1

GenotypeDepth
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6402
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49573
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6231
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1248
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1160
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002371873780286e-5
allele num: 66614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.112e0

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

QD
type: SiteQuality
SIO_000300: 1.021e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e-1

DP
type: SiteQuality
SIO_000300: 1.559993e6

GenotypeDepth
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 67
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49479
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1239
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6200
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 242
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501862309263487e-5
allele num: 66584
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.558722e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.76e0

MQRankSum
type: SiteQuality
SIO_000300: -3.83e-1

FS
type: SiteQuality
SIO_000300: 3.555e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.247e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e-1

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24632
bin: 2.75e1
variant carriers: 2

GenotypeDepth
all individuals: 236
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 26977
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 9.75e1
variant carriers: 4

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 67
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6162
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49437
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.118568232662192e-3
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502945773716484e-5
allele num: 66536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 1.54261473197069e-3
allele num: 10372
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.15e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 1.557687e6

QD
type: SiteQuality
SIO_000300: 1.313e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

GenotypeDepth
all individuals: 27
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 424
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 67
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6146
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49390
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.558117793705204e-4
allele num: 6418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.252e0

MQRankSum
type: SiteQuality
SIO_000300: 4.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.17e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 1.556632e6

FS
type: SiteQuality
SIO_000300: 2.315e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.67e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

GenotypeDepth
all individuals: 10
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 988
bin: 3.75e1
variant carriers: 7

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 248
bin: 4.75e1
variant carriers: 13

GenotypeDepth
all individuals: 31
bin: 6.75e1
variant carriers: 4

GenotypeDepth
all individuals: 9
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 444
bin: 4.25e1
variant carriers: 15

GenotypeQuality
all individuals: 49231
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1216
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6086
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1009
bin: 9.75e1
variant carriers: 93

GenotypeQuality
all individuals: 556
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

East Asian
type: Population
allele count: 90
allele frequency: 1.041907849039129e-2
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66482
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.121076233183856e-3
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.671522719389525e-5
allele num: 11532
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.554e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-1

QD
type: SiteQuality
SIO_000300: 8.140000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.235e1

FS
type: SiteQuality
SIO_000300: 3.916e0

DP
type: SiteQuality
SIO_000300: 1.556783e6

VQSLOD
type: SiteQuality
SIO_000300: 3.09e0

GenotypeDepth
all individuals: 183
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 980
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 67
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 7
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26796
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1213
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6088
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49260
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008514094888535e-5
allele num: 66478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 7.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.094e0

DP
type: SiteQuality
SIO_000300: 1.551405e6

QD
type: SiteQuality
SIO_000300: 1.241e1

VQSLOD
type: SiteQuality
SIO_000300: 8.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

GenotypeDepth
all individuals: 235
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 219
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24609
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6053
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49067
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.686587908269631e-5
allele num: 11512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66384
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.03e-1

DP
type: SiteQuality
SIO_000300: 1.550502e6

FS
type: SiteQuality
SIO_000300: 6.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.049e0

VQSLOD
type: SiteQuality
SIO_000300: 4.46e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-1

QD
type: SiteQuality
SIO_000300: 1.335e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.123e0

GenotypeDepth
all individuals: 24601
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 539
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 233
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1120
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6049
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48980
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013500482160077e-5
allele num: 66368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6312
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.415e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.98e-1

MQ
type: SiteQuality
SIO_000300: 5.926e1

DP
type: SiteQuality
SIO_000300: 1.549941e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

FS
type: SiteQuality
SIO_000300: 5.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeDepth
all individuals: 7
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26042
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 66
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5898
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 228
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48256
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.718172983479106e-5
allele num: 10290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66090
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.446483180428135e-4
allele num: 16350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e-1

DP
type: SiteQuality
SIO_000300: 1.539725e6

VQSLOD
type: SiteQuality
SIO_000300: 4.41e0

QD
type: SiteQuality
SIO_000300: 1.205e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

GenotypeDepth
all individuals: 846
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 10
bin: 7.75e1
variant carriers: 2

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 933
bin: 3.75e1
variant carriers: 8

GenotypeDepth
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 7.25e1
variant carriers: 2

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 44326
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4219
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5395
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 943
bin: 9.75e1
variant carriers: 49

GenotypeQuality
all individuals: 166
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.342762907522517e-5
allele num: 15766
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 5.015045135406219e-4
allele num: 5982
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 40
allele frequency: 6.168841183183739e-4
allele num: 64842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.561887800534283e-4
allele num: 11230
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.162790697674419e-3
allele num: 860
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.675e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.974e1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

DP
type: SiteQuality
SIO_000300: 1.486113e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-1

QD
type: SiteQuality
SIO_000300: 1.281e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.53e0

GenotypeDepth
all individuals: 1988
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3227
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 65
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23289
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1019
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4261
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5363
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44756
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5988
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11228
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.916699722332408e-5
allele num: 10084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15768
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-2

QD
type: SiteQuality
SIO_000300: 7.51e0

DP
type: SiteQuality
SIO_000300: 1.48377e6

MQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.989999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.061e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

FS
type: SiteQuality
SIO_000300: 2.152e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

GenotypeDepth
all individuals: 23
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23289
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 65
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 388
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 152
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4261
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44756
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5363
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1019
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5988
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.341958396752917e-5
allele num: 15768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542210295795935e-5
allele num: 64842
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.061e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-2

DP
type: SiteQuality
SIO_000300: 1.48377e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.989999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.152e0

QD
type: SiteQuality
SIO_000300: 7.51e0

GenotypeDepth
all individuals: 152
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22994
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5625
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 996
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5220
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 903
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5201
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43727
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5934
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.293968214628706e-5
allele num: 64558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.17e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.465e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.293e0

DP
type: SiteQuality
SIO_000300: 1.464236e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.17e-1

GenotypeDepth
all individuals: 23
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2499
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5585
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 384
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5114
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 913
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43140
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5641
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 204
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9998
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.193032689095681e-4
allele num: 8382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5920
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15480
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

FS
type: SiteQuality
SIO_000300: 1.608e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

QD
type: SiteQuality
SIO_000300: 1.247e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.954e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.931e0

DP
type: SiteQuality
SIO_000300: 1.456078e6

VQSLOD
type: SiteQuality
SIO_000300: 7.88e-1

GenotypeDepth
all individuals: 390
bin: 4.25e1
variant carriers: 14

GenotypeDepth
all individuals: 5365
bin: 3.25e1
variant carriers: 34

GenotypeDepth
all individuals: 9
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 854
bin: 3.75e1
variant carriers: 13

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 6.75e1
variant carriers: 5

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1211
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 9.75e1
variant carriers: 132

GenotypeQuality
all individuals: 104
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7421
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1248
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40271
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 487
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4800
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.319261213720317e-4
allele num: 15160
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.187648456057007e-3
allele num: 842
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.016942315449778e-4
allele num: 9916
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 123
allele frequency: 1.930501930501931e-3
allele num: 63714
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.625815808556925e-4
allele num: 11032
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.76e-1

QD
type: SiteQuality
SIO_000300: 1.201e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.267e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-2

DP
type: SiteQuality
SIO_000300: 1.421407e6

GenotypeDepth
all individuals: 4099
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 369
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 23
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18944
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1796
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1765
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4082
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37156
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10253
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 475
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.679175864606328e-4
allele num: 8154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62784
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10834
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.62e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.16e-1

DP
type: SiteQuality
SIO_000300: 1.359289e6

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

FS
type: SiteQuality
SIO_000300: 1.421e0

QD
type: SiteQuality
SIO_000300: 1.191e1

GenotypeDepth
all individuals: 7
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4199
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 65
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4653
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10583
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4053
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1869
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36803
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1819
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9696
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.595812587769692e-5
allele num: 62664
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14732
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.78e-1

FS
type: SiteQuality
SIO_000300: 2.716e0

VQSLOD
type: SiteQuality
SIO_000300: 1.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.27e-1

DP
type: SiteQuality
SIO_000300: 1.352202e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

QD
type: SiteQuality
SIO_000300: 9.199999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.77e-1

GenotypeDepth
all individuals: 217
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4489
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 365
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11663
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2064
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3919
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35472
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2093
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5692
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9626
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.860592755214051e-5
allele num: 14576
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.933e0

MQRankSum
type: SiteQuality
SIO_000300: -1.567e0

FS
type: SiteQuality
SIO_000300: 1.0643e1

QD
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-2

DP
type: SiteQuality
SIO_000300: 1.328012e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

MQ
type: SiteQuality
SIO_000300: 5.716e1

GenotypeDepth
all individuals: 153
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4428
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 65
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3919
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11663
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2064
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35472
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2093
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10736
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.37211855104281e-4
allele num: 14576
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.51e-1

MQ
type: SiteQuality
SIO_000300: 5.716e1

MQRankSum
type: SiteQuality
SIO_000300: -1.567e0

FS
type: SiteQuality
SIO_000300: 1.0643e1

VQSLOD
type: SiteQuality
SIO_000300: -1.933e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-2

QD
type: SiteQuality
SIO_000300: 1.22e0

DP
type: SiteQuality
SIO_000300: 1.328012e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

GenotypeDepth
all individuals: 3893
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 65
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 281
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 153
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2979
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15169
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3210
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29492
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3089
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1448
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 612
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10530
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.263264274886306e-4
allele num: 7916
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5562
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

FS
type: SiteQuality
SIO_000300: 1.856e0

MQRankSum
type: SiteQuality
SIO_000300: 6.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.74e-1

DP
type: SiteQuality
SIO_000300: 1.245602e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

VQSLOD
type: SiteQuality
SIO_000300: 8.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.620000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.145e1

GenotypeDepth
all individuals: 24401
bin: 1.25e1
variant carriers: 2

GenotypeDepth
all individuals: 352
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2307
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 613
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3489
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7052
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 875
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 364
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14555
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5735
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 183
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21542
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8990
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.885607709045695e-4
allele num: 12868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10036
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

QD
type: SiteQuality
SIO_000300: 1.17e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e0

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.020441e6

GenotypeDepth
all individuals: 23
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 350
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 103
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13107
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5926
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21554
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7461
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3834
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 715
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1459
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.850525985241011e-5
allele num: 12738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8954
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58340
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.714e1

DP
type: SiteQuality
SIO_000300: 1.002677e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.66e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.93e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.341e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.97e-1

GenotypeDepth
all individuals: 216
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24948
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 23
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1968
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 65
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7962
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21388
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11270
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4290
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1783
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6116
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 871
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1120
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57700
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.610565308423257e-4
allele num: 12418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5094
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.037e0

DP
type: SiteQuality
SIO_000300: 9.7878e5

VQSLOD
type: SiteQuality
SIO_000300: 9.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

QD
type: SiteQuality
SIO_000300: 1.306e1

MQRankSum
type: SiteQuality
SIO_000300: -2.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 14481
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 4253
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 65
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6431
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5773
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9094
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1916
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1673
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2701
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19483
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5958
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6820
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.819240285256877e-5
allele num: 54968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9264
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

DP
type: SiteQuality
SIO_000300: 9.05358e5

QD
type: SiteQuality
SIO_000300: 1.098e1

VQSLOD
type: SiteQuality
SIO_000300: 3.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.628e0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1909
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 530
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 54
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1343
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4976
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2753
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20642
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18884
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4737
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2096
bin: 2.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1058
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3164
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.74e-1

QD
type: SiteQuality
SIO_000300: 1.725e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.45486e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.56e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeDepth
all individuals: 548
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2038
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3782
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4593
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1527
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18151
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3019
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22508
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 215
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 9.140767824497258e-4
allele num: 1094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3232
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.124e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.933e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.53e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

DP
type: SiteQuality
SIO_000300: 4.57245e5

GenotypeDepth
all individuals: 201
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 762
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 191
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24281
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17837
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4207
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2236
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3211
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3080
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3538
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 8.488964346349745e-4
allele num: 1178
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.036e0

FS
type: SiteQuality
SIO_000300: 2.066e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

VQSLOD
type: SiteQuality
SIO_000300: -3.145e0

MQ
type: SiteQuality
SIO_000300: 3.7e1

DP
type: SiteQuality
SIO_000300: 4.61615e5

QD
type: SiteQuality
SIO_000300: 4.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.27e-2

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 559
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26351
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2284
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15940
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3325
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1869
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 49
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3455
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3556
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.411843876177658e-5
allele num: 11888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3840
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

DP
type: SiteQuality
SIO_000300: 4.83471e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.781e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.37e-1

QD
type: SiteQuality
SIO_000300: 1.242e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.99e-2

GenotypeDepth
all individuals: 16183
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1678
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28487
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14942
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3031
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2436
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2332
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3978
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.79e-2

QD
type: SiteQuality
SIO_000300: 9.9e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

VQSLOD
type: SiteQuality
SIO_000300: 2.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.96251e5

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5850
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3881
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5031
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2026
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1981
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32110
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2494
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11537
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1142
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13980
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.36914e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.003e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.23e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
type: SiteQuality
SIO_000300: 2.083e1

GenotypeDepth
all individuals: 3981
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1787
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11945
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 202
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5117
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2096
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1955
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11270
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 94
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2519
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32246
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1178
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.71591526344378e-4
allele num: 3682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4784
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 5.312e0

DP
type: SiteQuality
SIO_000300: 5.40258e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

QD
type: SiteQuality
SIO_000300: 1.375e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 36440
bin: 7.5e0
variant carriers: 7

GenotypeDepth
all individuals: 8458
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6371
bin: 1.25e1
variant carriers: 4

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2596
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34435
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 333
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8112
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1404
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1910
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2137
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 189
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 6559
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 3.632401017072285e-4
allele num: 16518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 980
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1838
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.040816326530612e-3
allele num: 1470
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.759398496240601e-3
allele num: 266
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.85656e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.004e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.71e-2

QD
type: SiteQuality
SIO_000300: 1.291e1

GenotypeDepth
all individuals: 206
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 733
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2231
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 639
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13415
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2759
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2633
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2398
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32059
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1912
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.036802476954472e-5
allele num: 28422
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

DP
type: SiteQuality
SIO_000300: 7.60278e5

QD
type: SiteQuality
SIO_000300: 1.263e1

VQSLOD
type: SiteQuality
SIO_000300: 3.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 7568
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1928
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 13111
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 206
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2435
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1158
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2621
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30950
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2019
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2780
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14577
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.298370604921169e-5
allele num: 30318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.860411899313501e-4
allele num: 3496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2068
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3580
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.87296e5

MQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.608e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

QD
type: SiteQuality
SIO_000300: 1.136e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.051e0

GenotypeDepth
all individuals: 2536
bin: 1.75e1
variant carriers: 4

GenotypeDepth
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 793
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29511
bin: 7.5e0
variant carriers: 2

GenotypeDepth
all individuals: 1577
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3806
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1652
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29965
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16138
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2790
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1225
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2614
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 109
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10070
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 2.769742106234997e-4
allele num: 32494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2258
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.15064e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

FS
type: SiteQuality
SIO_000300: 2.624e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

QD
type: SiteQuality
SIO_000300: 1.203e1

GenotypeDepth
all individuals: 204
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29240
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 802
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14845
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29699
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 347
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2605
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2778
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1609
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16426
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1465
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.048222886057428e-5
allele num: 32806
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4002
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.111e1

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.701e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

DP
type: SiteQuality
SIO_000300: 8.20353e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 832
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7635
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1263
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27757
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4112
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28386
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17323
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 206
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1372
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2606
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2842
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.881180131381814e-5
allele num: 34708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2470
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.4647e5

MQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

FS
type: SiteQuality
SIO_000300: 4.232e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e0

VQSLOD
type: SiteQuality
SIO_000300: 2.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.92e-1

GenotypeDepth
all individuals: 4466
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 894
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2936
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17438
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7599
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25963
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18798
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2570
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1181
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26772
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1589
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2808
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 942
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.718129926610492e-5
allele num: 36790
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6122
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4860
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4406
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.59e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.211000000000001e-1

FS
type: SiteQuality
SIO_000300: 9.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.65e-1

QD
type: SiteQuality
SIO_000300: 6.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

DP
type: SiteQuality
SIO_000300: 8.7961e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7509
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25165
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4628
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20179
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1600
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2748
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 851
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26212
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2509
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2770
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10928
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.947440924022465e-5
allele num: 37748
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

FS
type: SiteQuality
SIO_000300: 1.183e0

QD
type: SiteQuality
SIO_000300: 1.16e1

DP
type: SiteQuality
SIO_000300: 8.94389e5

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 924
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 52
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18149
bin: 2.25e1
variant carriers: 4

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2992
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 212
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4628
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 426
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26212
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2748
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20179
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 699
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 299
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1600
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2509
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.660322108345535e-4
allele num: 10928
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.649146974674155e-5
allele num: 37748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6260
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 6.57030223390276e-4
allele num: 4566
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

QD
type: SiteQuality
SIO_000300: 1.16e1

FS
type: SiteQuality
SIO_000300: 1.183e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

DP
type: SiteQuality
SIO_000300: 8.94389e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

GenotypeDepth
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23439
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6703
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3050
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2348
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1744
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1647
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 182
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25846
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21363
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1158
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2501
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11934
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7122
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.223605799163924e-5
allele num: 44972
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

VQSLOD
type: SiteQuality
SIO_000300: -3.221e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.027e0

DP
type: SiteQuality
SIO_000300: 9.92501e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.74e-1

QD
type: SiteQuality
SIO_000300: 3.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19723
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 508
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 990
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 212
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1740
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2579
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2583
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1894
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2413
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1609
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20753
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 865
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21951
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45002
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11932
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.405678942929435e-4
allele num: 7114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5556
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.56e0

MQRankSum
type: SiteQuality
SIO_000300: -1.183e0

FS
type: SiteQuality
SIO_000300: 2.345e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.661e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.049e0

DP
type: SiteQuality
SIO_000300: 9.96887e5

QD
type: SiteQuality
SIO_000300: 1.886e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.774e0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1026
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17047
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 25624
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6269
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18695
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 347
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1586
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2094
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2296
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29282
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6030
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.071251035625518e-5
allele num: 48280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

QD
type: SiteQuality
SIO_000300: 7.63e0

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.573e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

DP
type: SiteQuality
SIO_000300: 1.049763e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.48e-1

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 356
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1061
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 216
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3067
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 320
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1112
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1585
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18069
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2272
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 52
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29710
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.140243153628883e-5
allele num: 48858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3720
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.84e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.061071e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e-1

QD
type: SiteQuality
SIO_000300: 1.076e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

GenotypeDepth
all individuals: 6143
bin: 1.25e1
variant carriers: 2

GenotypeDepth
all individuals: 7096
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 356
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 5.25e1
variant carriers: 2

GenotypeDepth
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18069
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 730
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2272
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 29710
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1112
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1585
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 2.456097261451553e-4
allele num: 48858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6112
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.021819348628268e-5
allele num: 12466
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.84e0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e-1

QD
type: SiteQuality
SIO_000300: 1.076e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.061071e6

GenotypeDepth
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 30473
bin: 2.25e1
variant carriers: 7

GenotypeDepth
all individuals: 221
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1133
bin: 3.25e1
variant carriers: 4

GenotypeDepth
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 236
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1658
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 9.75e1
variant carriers: 22

GenotypeQuality
all individuals: 34438
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14223
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2183
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1885
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1312
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4204
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 2.687515269973125e-3
allele num: 8186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.449e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.01e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.135396e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.54e-1

GenotypeDepth
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11337
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 199
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1127
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32111
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36883
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 12837
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1650
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1176
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7082
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54814
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.939879464941937e-4
allele num: 13606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9076
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4374
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.162699e6

QD
type: SiteQuality
SIO_000300: 9.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

MQ
type: SiteQuality
SIO_000300: 5.931e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

FS
type: SiteQuality
SIO_000300: 3.305e0

VQSLOD
type: SiteQuality
SIO_000300: 3.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.69e-1

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8202
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3564
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35609
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 9483
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2090
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1233
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41007
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2561
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9512
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1252
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1160
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8938
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.719927075092016e-5
allele num: 58142
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14292
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.762e0

DP
type: SiteQuality
SIO_000300: 1.228238e6

MQRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

QD
type: SiteQuality
SIO_000300: 6.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.194e0

MQ
type: SiteQuality
SIO_000300: 5.889e1

VQSLOD
type: SiteQuality
SIO_000300: -1.469e0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9483
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8202
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 35609
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2090
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3564
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1233
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 219
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1160
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41007
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1252
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9512
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 63
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2561
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8938
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.719927075092016e-5
allele num: 58142
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.469e0

MQRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

FS
type: SiteQuality
SIO_000300: 1.762e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.194e0

MQ
type: SiteQuality
SIO_000300: 5.889e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

DP
type: SiteQuality
SIO_000300: 1.228238e6

QD
type: SiteQuality
SIO_000300: 6.92e0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3489
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2085
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 129
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8041
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40825
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 148
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9332
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 745
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2594
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1212
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7672
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.017677782241864e-4
allele num: 9956
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8962
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14326
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.987e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.064e0

VQSLOD
type: SiteQuality
SIO_000300: -6.469999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.232045e6

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.37e-1

GenotypeDepth
all individuals: 80
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1804
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 2945
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6528
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 226
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10416
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 37186
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2783
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 43392
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7743
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 5
allele frequency: 5.428881650380022e-4
allele num: 9210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14650
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

FS
type: SiteQuality
SIO_000300: 3.238e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.806e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

DP
type: SiteQuality
SIO_000300: 1.266389e6

QD
type: SiteQuality
SIO_000300: 1.182e1

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2530
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 240
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1406
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38192
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6529
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 943
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2884
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44836
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 792
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.632866333561935e-5
allele num: 61242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5284
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.22e-1

QD
type: SiteQuality
SIO_000300: 1.161e1

VQSLOD
type: SiteQuality
SIO_000300: 2.23e-1

DP
type: SiteQuality
SIO_000300: 1.294744e6

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.187e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeDepth
all individuals: 11260
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5279
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 89
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2567
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 240
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44309
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6526
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2894
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.631321370309951e-5
allele num: 61300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9456
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.315e0

DP
type: SiteQuality
SIO_000300: 1.295996e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.093e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

QD
type: SiteQuality
SIO_000300: 1.099e1

GenotypeDepth
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11581
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 259
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4923
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1531
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 84
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1467
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 84
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45083
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6224
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 7.5e0
variant carriers: 0