16-624687-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 624687
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 624687
    reference: chr 16
allele count: 1
allele frequency: 1.01386973801606e-5
allele num: 98632
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.613G>T
  hgvsp: ENSP00000439650.1:p.Ala205Ser
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.655G>T
  hgvsp: ENSP00000410434.1:p.Ala219Ser
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.613G>T
  hgvsp: ENSP00000386554.2:p.Ala205Ser
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.613G>T
  hgvsp: ENSP00000026218.5:p.Ala205Ser
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.613G>T
  hgvsp: ENSP00000386760.2:p.Ala205Ser
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.613G>T
  hgvsp: ENSP00000413753.1:p.Ala205Ser
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.613G>T
  hgvsp: ENSP00000326674.5:p.Ala205Ser
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9719
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6775
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29065
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2202
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala205Ser
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum

16-624687-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 624687
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 624686
    reference: chr 16
allele count: 1
allele frequency: 1.01386973801606e-5
allele num: 98632
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.657delC
  hgvsp: ENSP00000410434.1:p.Arg220GlyfsTer54
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.615delC
  hgvsp: ENSP00000386554.2:p.Arg206GlyfsTer?
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.615delC
  hgvsp: ENSP00000386760.2:p.Arg206GlyfsTer54
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.615delC
  hgvsp: ENSP00000413753.1:p.Arg206GlyfsTer54
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.615delC
  hgvsp: ENSP00000026218.5:p.Arg206GlyfsTer54
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.615delC
  hgvsp: ENSP00000439650.1:p.Arg206GlyfsTer54
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.615delC
  hgvsp: ENSP00000326674.5:p.Arg206GlyfsTer54
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6775
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26115
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29065
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3835
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2294
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Arg206GlyfsTer54
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: GC
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-624690-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 624690
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 624690
    reference: chr 16
allele count: 9
allele frequency: 9.051958240299317e-5
allele num: 99426
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.616A>C
  hgvsp: ENST00000470411.2:c.616A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.616A>C
  hgvsp: ENST00000422307.1:c.616A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.616A>C
  hgvsp: ENST00000026218.5:c.616A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.616A>C
  hgvsp: ENST00000409439.2:c.616A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.616A>C
  hgvsp: ENST00000321878.5:c.616A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.616A>C
  hgvsp: ENST00000409527.2:c.616A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.658A>C
  hgvsp: ENST00000443147.1:c.658A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6633
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9883
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7989
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26477
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2090
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30035
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4000
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg206Arg
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

16-624694-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 624694
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 624694
    reference: chr 16
allele count: 118
allele frequency: 1.174176086610412e-3
allele num: 100496
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.620G>A
  hgvsp: ENSP00000326674.5:p.Arg207Gln
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.620G>A
  hgvsp: ENSP00000386554.2:p.Arg207Gln
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.620G>A
  hgvsp: ENSP00000386760.2:p.Arg207Gln
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.662G>A
  hgvsp: ENSP00000410434.1:p.Arg221Gln
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.620G>A
  hgvsp: ENSP00000439650.1:p.Arg207Gln
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.620G>A
  hgvsp: ENSP00000413753.1:p.Arg207Gln
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.620G>A
  hgvsp: ENSP00000026218.5:p.Arg207Gln
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10091
  bin: 2.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 27284
  bin: 2.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 7745
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6162
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 9.75e1
  variant carriers: 115
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1942
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2061
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg207Gln
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

16-624700-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 624700
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 624700
    reference: chr 16
allele count: 5
allele frequency: 4.930285759362613e-5
allele num: 101414
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.626C>T
  hgvsp: ENSP00000386760.2:p.Ser209Leu
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.668C>T
  hgvsp: ENSP00000410434.1:p.Ser223Leu
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.626C>T
  hgvsp: ENSP00000326674.5:p.Ser209Leu
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.626C>T
  hgvsp: ENSP00000026218.5:p.Ser209Leu
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.626C>T
  hgvsp: ENSP00000413753.1:p.Ser209Leu
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.626C>T
  hgvsp: ENSP00000386554.2:p.Ser209Leu
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.626C>T
  hgvsp: ENSP00000439650.1:p.Ser209Leu
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5614
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28233
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1942
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9250
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser209Leu
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

16-624703-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 624703
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 624703
    reference: chr 16
allele count: 1
allele frequency: 9.793551925412309e-6
allele num: 102108
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.629G>T
  hgvsp: ENSP00000386554.2:p.Gly210Val
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.629G>T
  hgvsp: ENSP00000386760.2:p.Gly210Val
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.629G>T
  hgvsp: ENSP00000439650.1:p.Gly210Val
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.629G>T
  hgvsp: ENSP00000326674.5:p.Gly210Val
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.671G>T
  hgvsp: ENSP00000410434.1:p.Gly224Val
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.629G>T
  hgvsp: ENSP00000413753.1:p.Gly210Val
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.629G>T
  hgvsp: ENSP00000026218.5:p.Gly210Val
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9018
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly210Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-624708-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 624708
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 624708
    reference: chr 16
allele count: 5
allele frequency: 4.873294346978557e-5
allele num: 102600
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.634A>C
  hgvsp: ENSP00000026218.5:p.Ile212Leu
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.676A>C
  hgvsp: ENSP00000410434.1:p.Ile226Leu
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.634A>C
  hgvsp: ENSP00000386554.2:p.Ile212Leu
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.634A>C
  hgvsp: ENSP00000413753.1:p.Ile212Leu
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.634A>C
  hgvsp: ENSP00000386760.2:p.Ile212Leu
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.634A>C
  hgvsp: ENSP00000439650.1:p.Ile212Leu
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.634A>C
  hgvsp: ENSP00000326674.5:p.Ile212Leu
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10766
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29061
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1573
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4381
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8656
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile212Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

16-624711-T-TGCCTGCTGTTGGCCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 624711
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 624726
    reference: chr 16
allele count: 1
allele frequency: 9.738046547862499e-6
allele num: 102690
alternate allele: TGCCTGCTGTTGGCCA
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsp: ENSP00000413753.1:p.Leu216_Leu220dup
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsp: ENSP00000410434.1:p.Leu230_Leu234dup
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsp: ENSP00000386554.2:p.Leu216_Leu220dup
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsp: ENSP00000439650.1:p.Leu216_Leu220dup
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsp: ENSP00000026218.5:p.Leu216_Leu220dup
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsp: ENSP00000326674.5:p.Leu216_Leu220dup
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsp: ENSP00000386760.2:p.Leu216_Leu220dup
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10910
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1694
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1875
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30030
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu216_Leu220dup
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

16-624713-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 624713
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 624713
    reference: chr 16
allele count: 54379
allele frequency: 5.018086853810235e-1
allele num: 108366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.639C>T
  hgvsp: ENST00000409527.2:c.639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.639C>T
  hgvsp: ENST00000422307.1:c.639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.639C>T
  hgvsp: ENST00000026218.5:c.639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.639C>T
  hgvsp: ENST00000470411.2:c.639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.639C>T
  hgvsp: ENST00000409439.2:c.639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.681C>T
  hgvsp: ENST00000443147.1:c.681C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.639C>T
  hgvsp: ENST00000321878.5:c.639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 3.25e1
  variant carriers: 6014
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 1.75e1
  variant carriers: 5808
genotype depth: GenotypeDepth
  all individuals: 15265
  bin: 2.25e1
  variant carriers: 7035
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 4.75e1
  variant carriers: 1864
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 3.75e1
  variant carriers: 4518
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 291
genotype depth: GenotypeDepth
  all individuals: 10281
  bin: 2.75e1
  variant carriers: 7050
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 2.5e0
  variant carriers: 269
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 4.25e1
  variant carriers: 3032
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.75e1
  variant carriers: 570
genotype depth: GenotypeDepth
  all individuals: 4743
  bin: 1.25e1
  variant carriers: 3472
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 7.5e0
  variant carriers: 1622
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 155
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 5.25e1
  variant carriers: 1000
genotype quality: GenotypeQuality
  all individuals: 1822
  bin: 6.75e1
  variant carriers: 1196
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 5.25e1
  variant carriers: 1074
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 1.75e1
  variant carriers: 370
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 4.75e1
  variant carriers: 993
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 3.25e1
  variant carriers: 596
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 9.25e1
  variant carriers: 949
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 2.75e1
  variant carriers: 375
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 4.25e1
  variant carriers: 544
hgvs: p.Cys213Cys
num of homozygotes: 13686
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

16-624716-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 624716
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 624716
    reference: chr 16
allele count: 2
allele frequency: 1.989258006763477e-5
allele num: 100540
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.642G>T
  hgvsp: ENST00000321878.5:c.642G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.642G>T
  hgvsp: ENST00000026218.5:c.642G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.642G>T
  hgvsp: ENST00000409527.2:c.642G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.642G>T
  hgvsp: ENST00000409439.2:c.642G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.684G>T
  hgvsp: ENST00000443147.1:c.684G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.642G>T
  hgvsp: ENST00000470411.2:c.642G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.642G>T
  hgvsp: ENST00000422307.1:c.642G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17808
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7057
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu214Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP

16-624737-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 624737
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 624737
    reference: chr 16
allele count: 1
allele frequency: 1.094044024331539e-5
allele num: 91404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.663G>A
  hgvsp: ENST00000409527.2:c.663G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.663G>A
  hgvsp: ENST00000321878.5:c.663G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.663G>A
  hgvsp: ENST00000422307.1:c.663G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.663G>A
  hgvsp: ENST00000409439.2:c.663G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.705G>A
  hgvsp: ENST00000443147.1:c.705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.663G>A
  hgvsp: ENST00000026218.5:c.663G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.663G>A
  hgvsp: ENST00000470411.2:c.663G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14761
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2898
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser221Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

16-624738-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 624738
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 624738
    reference: chr 16
allele count: 1
allele frequency: 1.091798410341515e-5
allele num: 91592
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.664C>T
  hgvsp: ENST00000321878.5:c.664C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.664C>T
  hgvsp: ENST00000470411.2:c.664C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.664C>T
  hgvsp: ENST00000409439.2:c.664C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.664C>T
  hgvsp: ENST00000422307.1:c.664C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.664C>T
  hgvsp: ENST00000026218.5:c.664C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.664C>T
  hgvsp: ENST00000409527.2:c.664C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.706C>T
  hgvsp: ENST00000443147.1:c.706C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11412
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14963
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2882
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3091
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19138
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu222Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

16-624750-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 624750
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 624750
    reference: chr 16
allele count: 3
allele frequency: 3.52013517319065e-5
allele num: 85224
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.676G>A
  hgvsp: ENSP00000326674.5:p.Val226Ile
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.718G>A
  hgvsp: ENSP00000410434.1:p.Val240Ile
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.676G>A
  hgvsp: ENSP00000026218.5:p.Val226Ile
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.676G>A
  hgvsp: ENSP00000439650.1:p.Val226Ile
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.676G>A
  hgvsp: ENSP00000386760.2:p.Val226Ile
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.676G>A
  hgvsp: ENSP00000386554.2:p.Val226Ile
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.676G>A
  hgvsp: ENSP00000413753.1:p.Val226Ile
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11054
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14661
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2305
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3664
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val226Ile
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

16-624756-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 624756
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 624756
    reference: chr 16
allele count: 2
allele frequency: 2.461538461538462e-5
allele num: 81250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.682G>C
  hgvsp: ENSP00000413753.1:p.Ala228Pro
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.682G>C
  hgvsp: ENSP00000439650.1:p.Ala228Pro
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.682G>C
  hgvsp: ENSP00000386554.2:p.Ala228Pro
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.682G>C
  hgvsp: ENSP00000026218.5:p.Ala228Pro
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.682G>C
  hgvsp: ENSP00000326674.5:p.Ala228Pro
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.724G>C
  hgvsp: ENSP00000410434.1:p.Ala242Pro
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.682G>C
  hgvsp: ENSP00000386760.2:p.Ala228Pro
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14986
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10025
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9375
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4171
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2281
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala228Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-624760-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 624760
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 624760
    reference: chr 16
allele count: 1
allele frequency: 1.297117804238981e-5
allele num: 77094
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.686G>A
  hgvsp: ENSP00000026218.5:p.Cys229Tyr
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.686G>A
  hgvsp: ENSP00000439650.1:p.Cys229Tyr
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.728G>A
  hgvsp: ENSP00000410434.1:p.Cys243Tyr
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.686G>A
  hgvsp: ENSP00000386554.2:p.Cys229Tyr
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.686G>A
  hgvsp: ENSP00000386760.2:p.Cys229Tyr
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.686G>A
  hgvsp: ENSP00000326674.5:p.Cys229Tyr
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.686G>A
  hgvsp: ENSP00000413753.1:p.Cys229Tyr
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8267
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4660
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2067
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30280
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Cys229Tyr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

16-624761-CCGGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 624761
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 624757
    reference: chr 16
allele count: 1
allele frequency: 1.302049425796203e-5
allele num: 76802
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.688_689+2delCGGT
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.688_689+2delCGGT
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.688_689+2delCGGT
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.730_731+2delCGGT
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.688_689+2delCGGT
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.688_689+2delCGGT
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.688_689+2delCGGT
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16499
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8251
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2502
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4881
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
hgvs: c.688_689+2delCGGT
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: CCGGT
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

16-624764-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 624764
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 624764
    reference: chr 16
allele count: 1
allele frequency: 1.354242842826576e-5
allele num: 73842
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.689+1G>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.689+1G>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.689+1G>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.689+1G>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.731+1G>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.689+1G>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.689+1G>T
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: splice donor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17494
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19330
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6035
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13013
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5414
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32570
  bin: 2.25e1
  variant carriers: 0
hgvs: c.689+1G>T
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

16-624774-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 624774
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 624774
    reference: chr 16
allele count: 1
allele frequency: 1.684863189109044e-5
allele num: 59352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.689+11C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.689+11C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.689+11C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.689+11C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.689+11C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.731+11C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.689+11C>T
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20578
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22482
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8578
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9117
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3274
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1308
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

16-624775-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 624775
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 624775
    reference: chr 16
allele count: 3
allele frequency: 5.511261344012933e-5
allele num: 54434
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.689+12G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.689+12G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.689+12G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.689+12G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.731+12G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.689+12G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.689+12G>A
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9825
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21219
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22112
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3243
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2564
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2496
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34124
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1675
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

16-624776-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 624776
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 624776
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 54750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.689+13G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.689+13G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.689+13G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.689+13G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.689+13G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.731+13G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.689+13G>A
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 21488
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22008
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9965
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3214
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34899
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2662
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum

16-624785-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 624785
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 624785
    reference: chr 16
allele count: 13
allele frequency: 2.938782891762365e-4
allele num: 44236
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.689+22G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.689+22G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.689+22G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.689+22G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.731+22G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.689+22G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.689+22G>A
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23076
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13703
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19367
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14249
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3132
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 2416
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31663
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

16-624796-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 624796
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 624796
    reference: chr 16
allele count: 368
allele frequency: 1.211163770405477e-2
allele num: 30384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.689+33G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.689+33G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.731+33G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.689+33G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.689+33G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.689+33G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.689+33G>A
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 1.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13871
  bin: 1.25e1
  variant carriers: 258
genotype depth: GenotypeDepth
  all individuals: 18360
  bin: 2.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24890
  bin: 7.5e0
  variant carriers: 312
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 9.25e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 8.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 2.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 24283
  bin: 2.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 2069
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3302
  bin: 1.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 6.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 3.75e1
  variant carriers: 2
num of homozygotes: 1
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

16-624797-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 624797
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 624797
    reference: chr 16
allele count: 2
allele frequency: 7.590708972218005e-5
allele num: 26348
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.689+34T>C
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.689+34T>C
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.689+34T>C
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.731+34T>C
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.689+34T>C
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.689+34T>C
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.689+34T>C
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12328
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19270
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5991
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ

16-624803-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 624803
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 624803
    reference: chr 16
allele count: 1
allele frequency: 4.668970025212438e-5
allele num: 21418
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.689+40C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.689+40C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.689+40C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.689+40C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.689+40C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.689+40C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.731+40C>T
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20027
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9757
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17254
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7445
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1976
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2239
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2187
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ

16-625796-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625796
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625796
    reference: chr 16
allele count: 7
allele frequency: 3.319108582266477e-4
allele num: 21090
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.690-43G>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.690-43G>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.690-43G>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.690-43G>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.732-43G>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.690-43G>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.690-43G>T
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34026
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10949
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5271
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4418
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5715
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5068
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 3363
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

16-625800-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625800
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625800
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 21108
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.690-39C>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.732-39C>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.690-39C>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.690-39C>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.690-39C>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.690-39C>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.690-39C>G
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33749
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11440
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4883
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5503
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6790
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

16-625808-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625808
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625808
    reference: chr 16
allele count: 145
allele frequency: 6.763690642783842e-3
allele num: 21438
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.690-31G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.690-31G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.690-31G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.690-31G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.732-31G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.690-31G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.690-31G>A
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4152
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 13209
  bin: 7.5e0
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3143
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32469
  bin: 2.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3930
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 9.75e1
  variant carriers: 157
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 1.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2744
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 6
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

16-625809-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625809
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625809
    reference: chr 16
allele count: 1
allele frequency: 4.659832246039143e-5
allele num: 21460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.690-30G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.690-30G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.690-30G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.690-30G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.732-30G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.690-30G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.690-30G>A
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32399
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2492
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3911
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27874
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

16-625825-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625825
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625825
    reference: chr 16
allele count: 1
allele frequency: 4.460701222232135e-5
allele num: 22418
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.690-14C>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.690-14C>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.690-14C>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.732-14C>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.690-14C>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.690-14C>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.690-14C>G
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4480
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3662
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27918
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25801
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

16-625835-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625835
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625835
    reference: chr 16
allele count: 1
allele frequency: 4.288900325956424e-5
allele num: 23316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.690-4G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.690-4G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.690-4G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.690-4G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.690-4G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.732-4G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.690-4G>A
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24033
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22891
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20103
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
hgvs: c.690-4G>A
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

16-625836-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625836
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625836
    reference: chr 16
allele count: 1
allele frequency: 4.253147329023477e-5
allele num: 23512
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.690-3C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.690-3C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.690-3C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.732-3C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.690-3C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.690-3C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.690-3C>T
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23698
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7587
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20443
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22525
  bin: 7.5e0
  variant carriers: 0
hgvs: c.690-3C>T
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

16-625844-TCA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625844
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625842
    reference: chr 16
allele count: 1
allele frequency: 4.084967320261438e-5
allele num: 24480
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.696_697delCA
  hgvsp: ENSP00000326674.5:p.Phe232LeufsTer82
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.696_697delCA
  hgvsp: ENSP00000026218.5:p.Phe232LeufsTer82
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.696_697delCA
  hgvsp: ENSP00000386760.2:p.Phe232LeufsTer82
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.696_697delCA
  hgvsp: ENSP00000413753.1:p.Phe232LeufsTer82
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.696_697delCA
  hgvsp: ENSP00000439650.1:p.Phe232LeufsTer138
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.738_739delCA
  hgvsp: ENSP00000410434.1:p.Phe246LeufsTer82
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.696_697delCA
  hgvsp: ENSP00000386554.2:p.Phe232LeufsTer?
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20378
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe232LeufsTer82
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: TCA
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

16-625849-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625849
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625849
    reference: chr 16
allele count: 1
allele frequency: 4.013485310643763e-5
allele num: 24916
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.700C>T
  hgvsp: ENSP00000326674.5:p.Leu234Phe
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.700C>T
  hgvsp: ENSP00000386554.2:p.Leu234Phe
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.700C>T
  hgvsp: ENSP00000026218.5:p.Leu234Phe
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.700C>T
  hgvsp: ENSP00000439650.1:p.Leu234Phe
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.742C>T
  hgvsp: ENSP00000410434.1:p.Leu248Phe
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.700C>T
  hgvsp: ENSP00000413753.1:p.Leu234Phe
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.700C>T
  hgvsp: ENSP00000386760.2:p.Leu234Phe
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19953
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7817
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu234Phe
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

16-625854-GCC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625854
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625852
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 25206
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.708_709delCC
  hgvsp: ENSP00000326674.5:p.Leu237ValfsTer77
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.708_709delCC
  hgvsp: ENSP00000386554.2:p.Leu237ValfsTer?
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.708_709delCC
  hgvsp: ENSP00000386760.2:p.Leu237ValfsTer77
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.708_709delCC
  hgvsp: ENSP00000413753.1:p.Leu237ValfsTer77
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.708_709delCC
  hgvsp: ENSP00000439650.1:p.Leu237ValfsTer133
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.750_751delCC
  hgvsp: ENSP00000410434.1:p.Leu251ValfsTer77
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.708_709delCC
  hgvsp: ENSP00000026218.5:p.Leu237ValfsTer77
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: frameshift
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18911
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2770
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24042
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu237ValfsTer77
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: GCC
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum

16-625856-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625856
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625856
    reference: chr 16
allele count: 1
allele frequency: 3.917267314321529e-5
allele num: 25528
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.707C>T
  hgvsp: ENSP00000386554.2:p.Pro236Leu
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.707C>T
  hgvsp: ENSP00000439650.1:p.Pro236Leu
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.707C>T
  hgvsp: ENSP00000326674.5:p.Pro236Leu
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.749C>T
  hgvsp: ENSP00000410434.1:p.Pro250Leu
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.707C>T
  hgvsp: ENSP00000386760.2:p.Pro236Leu
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.707C>T
  hgvsp: ENSP00000413753.1:p.Pro236Leu
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.707C>T
  hgvsp: ENSP00000026218.5:p.Pro236Leu
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18596
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27883
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17776
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro236Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

16-625857-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625857
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625857
    reference: chr 16
allele count: 1
allele frequency: 3.901677721420211e-5
allele num: 25630
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.708C>T
  hgvsp: ENST00000470411.2:c.708C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.708C>T
  hgvsp: ENST00000321878.5:c.708C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.708C>T
  hgvsp: ENST00000026218.5:c.708C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.708C>T
  hgvsp: ENST00000409527.2:c.708C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.708C>T
  hgvsp: ENST00000409439.2:c.708C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.750C>T
  hgvsp: ENST00000443147.1:c.750C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.708C>T
  hgvsp: ENST00000422307.1:c.708C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28010
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18391
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17595
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro236Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

16-625869-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625869
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625869
    reference: chr 16
allele count: 5
allele frequency: 1.880123336090848e-4
allele num: 26594
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.720C>T
  hgvsp: ENST00000409439.2:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.720C>T
  hgvsp: ENST00000470411.2:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.720C>T
  hgvsp: ENST00000409527.2:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.720C>T
  hgvsp: ENST00000422307.1:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.720C>T
  hgvsp: ENST00000026218.5:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.762C>T
  hgvsp: ENST00000443147.1:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.720C>T
  hgvsp: ENST00000321878.5:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29705
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16431
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15851
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3438
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 25367
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu240Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

16-625878-ACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625878
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625876
    reference: chr 16
allele count: 2
allele frequency: 7.219695328857122e-5
allele num: 27702
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.775_776delTC
  hgvsp: ENSP00000410434.1:p.Ser259HisfsTer69
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.733_734delTC
  hgvsp: ENSP00000439650.1:p.Ser245HisfsTer125
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.733_734delTC
  hgvsp: ENSP00000413753.1:p.Ser245HisfsTer69
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.733_734delTC
  hgvsp: ENSP00000326674.5:p.Ser245HisfsTer69
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.733_734delTC
  hgvsp: ENSP00000026218.5:p.Ser245HisfsTer69
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.733_734delTC
  hgvsp: ENSP00000386554.2:p.Ser245HisfsTer?
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.733_734delTC
  hgvsp: ENSP00000386760.2:p.Ser245HisfsTer69
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14979
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30888
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1920
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3042
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7941
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser245HisfsTer69
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: ACT
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-625883-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625883
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625883
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 27988
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.734C>T
  hgvsp: ENSP00000386554.2:p.Ser245Phe
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.734C>T
  hgvsp: ENSP00000386760.2:p.Ser245Phe
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.734C>T
  hgvsp: ENSP00000439650.1:p.Ser245Phe
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.734C>T
  hgvsp: ENSP00000026218.5:p.Ser245Phe
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.776C>T
  hgvsp: ENSP00000410434.1:p.Ser259Phe
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.734C>T
  hgvsp: ENSP00000413753.1:p.Ser245Phe
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.734C>T
  hgvsp: ENSP00000326674.5:p.Ser245Phe
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 14527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31178
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7915
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14269
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser245Phe
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS

16-625885-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625885
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625885
    reference: chr 16
allele count: 1
allele frequency: 3.541578127213486e-5
allele num: 28236
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.736A>G
  hgvsp: ENSP00000326674.5:p.Thr246Ala
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.736A>G
  hgvsp: ENSP00000026218.5:p.Thr246Ala
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.736A>G
  hgvsp: ENSP00000386554.2:p.Thr246Ala
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.778A>G
  hgvsp: ENSP00000410434.1:p.Thr260Ala
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.736A>G
  hgvsp: ENSP00000439650.1:p.Thr246Ala
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.736A>G
  hgvsp: ENSP00000386760.2:p.Thr246Ala
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.736A>G
  hgvsp: ENSP00000413753.1:p.Thr246Ala
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31219
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14388
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26732
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1546
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3598
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr246Ala
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

16-625886-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625886
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625886
    reference: chr 16
allele count: 1
allele frequency: 3.528083545018346e-5
allele num: 28344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.737C>T
  hgvsp: ENSP00000386554.2:p.Thr246Met
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.737C>T
  hgvsp: ENSP00000326674.5:p.Thr246Met
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.779C>T
  hgvsp: ENSP00000410434.1:p.Thr260Met
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.737C>T
  hgvsp: ENSP00000439650.1:p.Thr246Met
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.737C>T
  hgvsp: ENSP00000386760.2:p.Thr246Met
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.737C>T
  hgvsp: ENSP00000026218.5:p.Thr246Met
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.737C>T
  hgvsp: ENSP00000413753.1:p.Thr246Met
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31359
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3035
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Thr246Met
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

16-625887-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625887
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625887
    reference: chr 16
allele count: 2
allele frequency: 7.010164738871364e-5
allele num: 28530
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.738G>A
  hgvsp: ENST00000470411.2:c.738G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.780G>A
  hgvsp: ENST00000443147.1:c.780G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.738G>A
  hgvsp: ENST00000422307.1:c.738G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.738G>A
  hgvsp: ENST00000409527.2:c.738G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.738G>A
  hgvsp: ENST00000409439.2:c.738G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.738G>A
  hgvsp: ENST00000321878.5:c.738G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.738G>A
  hgvsp: ENST00000026218.5:c.738G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14012
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31449
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2044
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27818
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13891
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Thr246Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/16-625894-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625894
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625894
    reference: chr 16
allele count: 1
allele frequency: 3.438316600192546e-5
allele num: 29084
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.745C>A
  hgvsp: ENSP00000413753.1:p.Gln249Lys
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.745C>A
  hgvsp: ENSP00000386760.2:p.Gln249Lys
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.745C>A
  hgvsp: ENSP00000439650.1:p.Gln249Lys
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.745C>A
  hgvsp: ENSP00000326674.5:p.Gln249Lys
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.745C>A
  hgvsp: ENSP00000386554.2:p.Gln249Lys
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.787C>A
  hgvsp: ENSP00000410434.1:p.Gln263Lys
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.745C>A
  hgvsp: ENSP00000026218.5:p.Gln249Lys
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31946
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27721
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7921
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln249Lys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/16-625900-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625900
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625900
    reference: chr 16
allele count: 2
allele frequency: 6.750826976304597e-5
allele num: 29626
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.751C>A
  hgvsp: ENST00000409439.2:c.751C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.751C>A
  hgvsp: ENST00000470411.2:c.751C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.751C>A
  hgvsp: ENST00000409527.2:c.751C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.751C>A
  hgvsp: ENST00000422307.1:c.751C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.751C>A
  hgvsp: ENST00000026218.5:c.751C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.793C>A
  hgvsp: ENST00000443147.1:c.793C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.751C>A
  hgvsp: ENST00000321878.5:c.751C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12775
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32048
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3169
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg251Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD

16-625900-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625900
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625900
    reference: chr 16
allele count: 4
allele frequency: 1.350165395260919e-4
allele num: 29626
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.751C>T
  hgvsp: ENSP00000439650.1:p.Arg251Trp
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.751C>T
  hgvsp: ENSP00000026218.5:p.Arg251Trp
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.793C>T
  hgvsp: ENSP00000410434.1:p.Arg265Trp
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.751C>T
  hgvsp: ENSP00000386760.2:p.Arg251Trp
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.751C>T
  hgvsp: ENSP00000326674.5:p.Arg251Trp
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.751C>T
  hgvsp: ENSP00000386554.2:p.Arg251Trp
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.751C>T
  hgvsp: ENSP00000413753.1:p.Arg251Trp
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12775
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32048
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3169
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27962
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 7902
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg251Trp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS

16-625901-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625901
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625901
    reference: chr 16
allele count: 27
allele frequency: 9.26625025739584e-4
allele num: 29138
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.752G>A
  hgvsp: ENSP00000386760.2:p.Arg251Gln
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.794G>A
  hgvsp: ENSP00000410434.1:p.Arg265Gln
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.752G>A
  hgvsp: ENSP00000326674.5:p.Arg251Gln
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.752G>A
  hgvsp: ENSP00000439650.1:p.Arg251Gln
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.752G>A
  hgvsp: ENSP00000026218.5:p.Arg251Gln
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.752G>A
  hgvsp: ENSP00000413753.1:p.Arg251Gln
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386554
  ensembl transcript: ENST00000409439
  gene symbol: PIGQ
  hgvsc: ENST00000409439.2:c.752G>A
  hgvsp: ENSP00000386554.2:p.Arg251Gln
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12962
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31740
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2639
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25458
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg251Gln
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

16-625907-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625907
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625907
    reference: chr 16
allele count: 2
allele frequency: 6.660893891960301e-5
allele num: 30026
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.758G>A
  hgvsp: ENSP00000026218.5:p.Arg253Gln
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.758G>A
  hgvsp: ENSP00000439650.1:p.Arg253Gln
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.758G>A
  hgvsp: ENSP00000413753.1:p.Arg253Gln
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.758G>A
  hgvsp: ENSP00000326674.5:p.Arg253Gln
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.758G>A
  hgvsp: ENSP00000386760.2:p.Arg253Gln
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.800G>A
  hgvsp: ENSP00000410434.1:p.Arg267Gln
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32289
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2433
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27976
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3428
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg253Gln
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

16-625922-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625922
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625922
    reference: chr 16
allele count: 2
allele frequency: 6.391409945033875e-5
allele num: 31292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.773C>T
  hgvsp: ENSP00000413753.1:p.Thr258Met
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.773C>T
  hgvsp: ENSP00000326674.5:p.Thr258Met
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.773C>T
  hgvsp: ENSP00000026218.5:p.Thr258Met
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.773C>T
  hgvsp: ENSP00000439650.1:p.Thr258Met
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.815C>T
  hgvsp: ENSP00000410434.1:p.Thr272Met
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.773C>T
  hgvsp: ENSP00000386760.2:p.Thr258Met
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10974
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33277
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10844
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8284
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30424
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1810
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr258Met
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

16-625939-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625939
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625939
    reference: chr 16
allele count: 3
allele frequency: 9.30809804529941e-5
allele num: 32230
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.790C>T
  hgvsp: ENSP00000026218.5:p.Arg264Trp
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.790C>T
  hgvsp: ENSP00000386760.2:p.Arg264Trp
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.790C>T
  hgvsp: ENSP00000326674.5:p.Arg264Trp
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.790C>T
  hgvsp: ENSP00000413753.1:p.Arg264Trp
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.832C>T
  hgvsp: ENSP00000410434.1:p.Arg278Trp
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.790C>T
  hgvsp: ENSP00000439650.1:p.Arg264Trp
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4311
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10065
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31764
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg264Trp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

16-625940-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625940
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625940
    reference: chr 16
allele count: 1
allele frequency: 3.086038760646834e-5
allele num: 32404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.833G>A
  hgvsp: ENSP00000410434.1:p.Arg278Gln
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.791G>A
  hgvsp: ENSP00000413753.1:p.Arg264Gln
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.791G>A
  hgvsp: ENSP00000026218.5:p.Arg264Gln
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.791G>A
  hgvsp: ENSP00000326674.5:p.Arg264Gln
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.791G>A
  hgvsp: ENSP00000386760.2:p.Arg264Gln
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.791G>A
  hgvsp: ENSP00000439650.1:p.Arg264Gln
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32251
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8498
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9996
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2466
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg264Gln
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-625943-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625943
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625943
    reference: chr 16
allele count: 1
allele frequency: 3.058665198507371e-5
allele num: 32694
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.836A>G
  hgvsp: ENSP00000410434.1:p.Lys279Arg
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.794A>G
  hgvsp: ENSP00000326674.5:p.Lys265Arg
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.794A>G
  hgvsp: ENSP00000439650.1:p.Lys265Arg
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.794A>G
  hgvsp: ENSP00000026218.5:p.Lys265Arg
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.794A>G
  hgvsp: ENSP00000386760.2:p.Lys265Arg
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.794A>G
  hgvsp: ENSP00000413753.1:p.Lys265Arg
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33701
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10033
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys265Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD

16-625944-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625944
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625944
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 32636
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.795G>A
  hgvsp: ENST00000321878.5:c.795G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.795G>A
  hgvsp: ENST00000470411.2:c.795G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.795G>A
  hgvsp: ENST00000422307.1:c.795G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.795G>A
  hgvsp: ENST00000026218.5:c.795G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.795G>A
  hgvsp: ENST00000409527.2:c.795G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.837G>A
  hgvsp: ENST00000443147.1:c.837G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 10047
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33677
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9928
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2019
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32919
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys265Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/16-625946-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625946
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625946
    reference: chr 16
allele count: 1
allele frequency: 3.078059591233686e-5
allele num: 32488
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.839C>A
  hgvsp: ENSP00000410434.1:p.Ala280Glu
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.797C>A
  hgvsp: ENSP00000026218.5:p.Ala266Glu
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.797C>A
  hgvsp: ENSP00000386760.2:p.Ala266Glu
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.797C>A
  hgvsp: ENSP00000439650.1:p.Ala266Glu
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.797C>A
  hgvsp: ENSP00000326674.5:p.Ala266Glu
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.797C>A
  hgvsp: ENSP00000413753.1:p.Ala266Glu
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33485
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10087
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9992
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32539
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala266Glu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

16-625946-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625946
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625946
    reference: chr 16
allele count: 1
allele frequency: 3.078059591233686e-5
allele num: 32488
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.797C>T
  hgvsp: ENSP00000326674.5:p.Ala266Val
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.797C>T
  hgvsp: ENSP00000439650.1:p.Ala266Val
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.797C>T
  hgvsp: ENSP00000386760.2:p.Ala266Val
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.797C>T
  hgvsp: ENSP00000413753.1:p.Ala266Val
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.839C>T
  hgvsp: ENSP00000410434.1:p.Ala280Val
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.797C>T
  hgvsp: ENSP00000026218.5:p.Ala266Val
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33485
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10087
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9992
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8603
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala266Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

16-625947-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625947
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625947
    reference: chr 16
allele count: 16
allele frequency: 4.921259842519685e-4
allele num: 32512
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.798G>A
  hgvsp: ENST00000026218.5:c.798G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.798G>A
  hgvsp: ENST00000470411.2:c.798G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.798G>A
  hgvsp: ENST00000422307.1:c.798G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.798G>A
  hgvsp: ENST00000321878.5:c.798G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.840G>A
  hgvsp: ENST00000443147.1:c.840G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.798G>A
  hgvsp: ENST00000409527.2:c.798G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10226
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33375
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8508
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32330
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala266Ala
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

16-625947-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625947
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625947
    reference: chr 16
allele count: 1
allele frequency: 3.075787401574803e-5
allele num: 32512
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.798G>T
  hgvsp: ENST00000422307.1:c.798G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.798G>T
  hgvsp: ENST00000409527.2:c.798G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.798G>T
  hgvsp: ENST00000321878.5:c.798G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.798G>T
  hgvsp: ENST00000026218.5:c.798G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.840G>T
  hgvsp: ENST00000443147.1:c.840G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.798G>T
  hgvsp: ENST00000470411.2:c.798G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10226
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33375
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10121
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala266Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/16-625953-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625953
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625953
    reference: chr 16
allele count: 3
allele frequency: 9.176556955830173e-5
allele num: 32692
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.804C>A
  hgvsp: ENSP00000439650.1:p.Asn268Lys
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.804C>A
  hgvsp: ENSP00000326674.5:p.Asn268Lys
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.804C>A
  hgvsp: ENSP00000413753.1:p.Asn268Lys
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.804C>A
  hgvsp: ENSP00000026218.5:p.Asn268Lys
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.804C>A
  hgvsp: ENSP00000386760.2:p.Asn268Lys
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.846C>A
  hgvsp: ENSP00000410434.1:p.Asn282Lys
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32931
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10585
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32063
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10503
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8403
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn268Lys
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

16-625959-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625959
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625959
    reference: chr 16
allele count: 448
allele frequency: 1.357411222882075e-2
allele num: 33004
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.810C>T
  hgvsp: ENST00000470411.2:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.810C>T
  hgvsp: ENST00000026218.5:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.810C>T
  hgvsp: ENST00000422307.1:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.810C>T
  hgvsp: ENST00000321878.5:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.810C>T
  hgvsp: ENST00000409527.2:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.852C>T
  hgvsp: ENST00000443147.1:c.852C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11002
  bin: 2.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 32345
  bin: 7.5e0
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 1.25e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 1.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 31788
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 8332
  bin: 6.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 7.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.75e1
  variant carriers: 5
hgvs: p.Ala270Ala
num of homozygotes: 2
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

16-625963-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625963
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625963
    reference: chr 16
allele count: 1
allele frequency: 3.060162800660995e-5
allele num: 32678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.814C>T
  hgvsp: ENST00000470411.2:c.814C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.814C>T
  hgvsp: ENST00000422307.1:c.814C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.814C>T
  hgvsp: ENST00000409527.2:c.814C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.856C>T
  hgvsp: ENST00000443147.1:c.856C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.814C>T
  hgvsp: ENST00000321878.5:c.814C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.814C>T
  hgvsp: ENST00000026218.5:c.814C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31916
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11601
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31960
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1470
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu272Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

16-625968-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625968
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625968
    reference: chr 16
allele count: 1
allele frequency: 3.080714725816389e-5
allele num: 32460
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.819G>A
  hgvsp: ENSP00000026218.5:p.Met273Ile
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.819G>A
  hgvsp: ENSP00000439650.1:p.Met273Ile
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.819G>A
  hgvsp: ENSP00000326674.5:p.Met273Ile
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.819G>A
  hgvsp: ENSP00000386760.2:p.Met273Ile
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.819G>A
  hgvsp: ENSP00000413753.1:p.Met273Ile
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.861G>A
  hgvsp: ENSP00000410434.1:p.Met287Ile
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4876
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31267
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Met273Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

16-625973-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625973
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625973
    reference: chr 16
allele count: 8
allele frequency: 2.488800398208064e-4
allele num: 32144
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.863+3G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.821+3G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.821+3G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.821+3G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.824G>A
  hgvsp: ENSP00000439650.1:p.Cys275Tyr
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.821+3G>A
  variant of: http://identifiers.org/hgnc/14135
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29979
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13668
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5040
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30269
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1988
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13771
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Cys275Tyr
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

16-625977-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625977
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625977
    reference: chr 16
allele count: 1
allele frequency: 3.176418270757893e-5
allele num: 31482
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.863+7G>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.821+7G>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.821+7G>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.821+7G>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.821+7G>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.828G>T
  hgvsp: ENST00000470411.2:c.828G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28441
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2795
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 7.25e1
  variant carriers: 0
hgvs: c.821+7G>T
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ

16-625994-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 625994
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 625994
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 28796
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.821+24C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.845C>T
  hgvsp: ENSP00000439650.1:p.Ala282Val
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.821+24C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.821+24C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.821+24C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.863+24C>T
  variant of: http://identifiers.org/hgnc/14135
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22010
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22607
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22270
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala282Val
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP

16-626003-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 626003
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 626003
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 26482
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.821+33G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.821+33G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.854G>A
  hgvsp: ENSP00000439650.1:p.Gly285Asp
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.821+33G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.863+33G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.821+33G>A
  variant of: http://identifiers.org/hgnc/14135
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 18551
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26560
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17050
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6994
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26718
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly285Asp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP

16-626005-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 626005
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 626005
    reference: chr 16
allele count: 1
allele frequency: 3.844675124951942e-5
allele num: 26010
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.863+35G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.856G>A
  hgvsp: ENSP00000439650.1:p.Ala286Thr
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.821+35G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.821+35G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.821+35G>A
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.821+35G>A
  variant of: http://identifiers.org/hgnc/14135
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27621
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27701
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15943
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala286Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-626006-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 626006
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 626006
    reference: chr 16
allele count: 3
allele frequency: 1.174536058256989e-4
allele num: 25542
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.821+36C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.821+36C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.821+36C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.857C>T
  hgvsp: ENSP00000439650.1:p.Ala286Val
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.863+36C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.821+36C>T
  variant of: http://identifiers.org/hgnc/14135
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14656
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala286Val
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-626020-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 626020
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 626020
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 22180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.821+50C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.821+50C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.871C>T
  hgvsp: ENSP00000439650.1:p.Pro291Ser
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.863+50C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.821+50C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.821+50C>T
  variant of: http://identifiers.org/hgnc/14135
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11311
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33606
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1894
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8127
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32668
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro291Ser
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

16-626028-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 626028
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 626028
    reference: chr 16
allele count: 7
allele frequency: 3.267668751750537e-4
allele num: 21422
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.863+58A>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.821+58A>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.879A>G
  hgvsp: ENST00000470411.2:c.879A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.821+58A>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.821+58A>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.821+58A>G
  variant of: http://identifiers.org/hgnc/14135
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34774
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9356
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6491
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33516
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2396
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro293Pro
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

16-626032-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 626032
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 626032
    reference: chr 16
allele count: 1
allele frequency: 4.751045229950589e-5
allele num: 21048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.821+62C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.821+62C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.863+62C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.883C>T
  hgvsp: ENSP00000439650.1:p.Pro295Ser
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.821+62C>T
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.821+62C>T
  variant of: http://identifiers.org/hgnc/14135
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33835
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5706
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2482
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6389
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro295Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-626034-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 626034
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 626033
    reference: chr 16
allele count: 2
allele frequency: 9.610764055742432e-5
allele num: 20810
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.821+65delT
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.863+65delT
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.821+65delT
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.886delT
  hgvsp: ENSP00000439650.1:p.Ser296LeufsTer156
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.821+65delT
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.821+65delT
  variant of: http://identifiers.org/hgnc/14135
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7618
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3764
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6353
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2640
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33762
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser296LeufsTer156
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: CT
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

16-626037-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 626037
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 626037
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 20428
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.863+67T>C
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.821+67T>C
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.821+67T>C
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.821+67T>C
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.821+67T>C
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.888T>C
  hgvsp: ENST00000470411.2:c.888T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14135
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6764
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35255
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3007
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33253
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6173
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 1
hgvs: p.Ser296Ser
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

16-626041-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 626041
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 626041
    reference: chr 16
allele count: 1
allele frequency: 4.94168808064835e-5
allele num: 20236
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000326674
  ensembl transcript: ENST00000321878
  gene symbol: PIGQ
  hgvsc: ENST00000321878.5:c.821+71C>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000439650
  ensembl transcript: ENST00000470411
  gene symbol: PIGQ
  hgvsc: ENST00000470411.2:c.892C>G
  hgvsp: ENSP00000439650.1:p.Pro298Ala
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000410434
  ensembl transcript: ENST00000443147
  gene symbol: PIGQ
  hgvsc: ENST00000443147.1:c.863+71C>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000026218
  ensembl transcript: ENST00000026218
  gene symbol: PIGQ
  hgvsc: ENST00000026218.5:c.821+71C>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000386760
  ensembl transcript: ENST00000409527
  gene symbol: PIGQ
  hgvsc: ENST00000409527.2:c.821+71C>G
  variant of: http://identifiers.org/hgnc/14135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000007541
  ensembl protein: ENSP00000413753
  ensembl transcript: ENST00000422307
  gene symbol: PIGQ
  hgvsc: ENST00000422307.1:c.821+71C>G
  variant of: http://identifiers.org/hgnc/14135
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35388
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4146
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2903
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33379
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro298Ala
num of homozygotes: 0
population: East Asian
population: Other
population: African
reference allele: C

GenotypeQuality
all individuals: 1207
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1635
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2294
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3835
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10267
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13986
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54714
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.309243257397224e-4
allele num: 7638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4498
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.83e-1

QD
type: SiteQuality
SIO_000300: 1.731e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.547e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.91e0

FS
type: SiteQuality
SIO_000300: 9.83e-1

DP
type: SiteQuality
SIO_000300: 1.15138e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.11e-1

GenotypeQuality
all individuals: 2202
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1635
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10267
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 727
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13986
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.82768578425997e-5
allele num: 54714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.547e0

MQRankSum
type: SiteQuality
SIO_000300: -2.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.91e0

DP
type: SiteQuality
SIO_000300: 1.15138e6

FS
type: SiteQuality
SIO_000300: 9.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

QD
type: SiteQuality
SIO_000300: 1.731e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.11e-1

GenotypeQuality
all individuals: 2298
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9997
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1616
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 9.75e1
variant carriers: 9

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14072
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 1.004304160688666e-3
allele num: 6970
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4576
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.939864209505335e-4
allele num: 10310
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.160027e6

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

QD
type: SiteQuality
SIO_000300: 9.56e0

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

FS
type: SiteQuality
SIO_000300: 9.340000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-2

GenotypeQuality
all individuals: 9675
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1323
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 183
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1689
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30441
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1233
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 688
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2230
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4059
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 182
bin: 8.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7090
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.457725947521866e-3
allele num: 686
num of homozygotes: 0

East Asian
type: Population
allele count: 109
allele frequency: 1.404639175257732e-2
allele num: 7760
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 4.257734885041158e-4
allele num: 14092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.104377104377104e-4
allele num: 4752
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.380000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.52e-1

DP
type: SiteQuality
SIO_000300: 1.175648e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.3e-2

FS
type: SiteQuality
SIO_000300: 5.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

GenotypeQuality
all individuals: 1294
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2044
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 31363
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 741
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 5
allele frequency: 6.3971340839304e-4
allele num: 7816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.928e1

DP
type: SiteQuality
SIO_000300: 1.19313e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

FS
type: SiteQuality
SIO_000300: 2.095e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.07e-1

QD
type: SiteQuality
SIO_000300: 7.7e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.286e0

GenotypeQuality
all individuals: 30947
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1150
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1673
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1817
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 802
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4299
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.767596422384841e-5
allele num: 56574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4960
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.114e0

FS
type: SiteQuality
SIO_000300: 3.267e0

DP
type: SiteQuality
SIO_000300: 1.200094e6

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.81e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

GenotypeQuality
all individuals: 31535
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1724
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1245
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1531
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.793837278834992e-5
allele num: 56858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5000
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-1

QD
type: SiteQuality
SIO_000300: 8.720000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.581e-1

FS
type: SiteQuality
SIO_000300: 6.327e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.66e-1

DP
type: SiteQuality
SIO_000300: 1.211345e6

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

GenotypeQuality
all individuals: 1558
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4391
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8505
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1570
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1331
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5028
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7412
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.063144511936714e-5
allele num: 14158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.43e-1

QD
type: SiteQuality
SIO_000300: 2.03e0

DP
type: SiteQuality
SIO_000300: 1.213164e6

GenotypeQuality
all individuals: 916
bin: 2.5e0
variant carriers: 85

GenotypeQuality
all individuals: 294
bin: 1.25e1
variant carriers: 222

GenotypeQuality
all individuals: 867
bin: 3.75e1
variant carriers: 686

GenotypeQuality
all individuals: 3209
bin: 2.25e1
variant carriers: 445

GenotypeQuality
all individuals: 11711
bin: 6.25e1
variant carriers: 1194

GenotypeQuality
all individuals: 29761
bin: 9.75e1
variant carriers: 29758

GenotypeQuality
all individuals: 851
bin: 7.5e0
variant carriers: 219

GenotypeQuality
all individuals: 1206
bin: 7.75e1
variant carriers: 1149

GenotypeQuality
all individuals: 665
bin: 8.75e1
variant carriers: 661

GenotypeQuality
all individuals: 844
bin: 5.75e1
variant carriers: 675

GenotypeQuality
all individuals: 813
bin: 7.25e1
variant carriers: 704

GenotypeQuality
all individuals: 1087
bin: 8.25e1
variant carriers: 1062

Other
type: Population
allele count: 321
allele frequency: 4.257294429708223e-1
allele num: 754
num of homozygotes: 61

South Asian
type: Population
allele count: 9733
allele frequency: 6.409192677466087e-1
allele num: 15186
num of homozygotes: 3068

African
type: Population
allele count: 4338
allele frequency: 5.198945349952061e-1
allele num: 8344
num of homozygotes: 1027

Latino
type: Population
allele count: 6343
allele frequency: 5.813932172318973e-1
allele num: 10910
num of homozygotes: 1841

East Asian
type: Population
allele count: 5032
allele frequency: 6.241627387744977e-1
allele num: 8062
num of homozygotes: 1532

European (Non-Finnish)
type: Population
allele count: 25639
allele frequency: 4.310669491240459e-1
allele num: 59478
num of homozygotes: 5409

European (Finnish)
type: Population
allele count: 2973
allele frequency: 5.278764204545454e-1
allele num: 5632
num of homozygotes: 748

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

DP
type: SiteQuality
SIO_000300: 1.542563e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.94e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.215e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.743e1

GenotypeQuality
all individuals: 1880
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4408
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1273
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12166
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1373
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 892
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32926
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5030
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.674511901577962e-4
allele num: 7478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7674
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.47e0

MQRankSum
type: SiteQuality
SIO_000300: -1.64e-1

QD
type: SiteQuality
SIO_000300: 5.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

FS
type: SiteQuality
SIO_000300: 3.7e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.284e0

DP
type: SiteQuality
SIO_000300: 1.223965e6

GenotypeQuality
all individuals: 274
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24962
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3082
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18889
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1009
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 30
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.909052728036348e-5
allele num: 52382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.75e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.079887e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.768e-1

QD
type: SiteQuality
SIO_000300: 6.82e0

GenotypeQuality
all individuals: 161
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1662
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25607
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1783
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52472
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.418842224744608e-4
allele num: 7048
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4546
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.032e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

QD
type: SiteQuality
SIO_000300: 1.335e1

VQSLOD
type: SiteQuality
SIO_000300: 2.35e-1

DP
type: SiteQuality
SIO_000300: 1.077393e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

GenotypeQuality
all individuals: 414
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1817
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20930
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 24349
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.059924485404571e-5
allele num: 49262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8990
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4226
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.623376623376623e-3
allele num: 616
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

QD
type: SiteQuality
SIO_000300: 1.108e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.52e-1

FS
type: SiteQuality
SIO_000300: 8.551e0

DP
type: SiteQuality
SIO_000300: 9.77865e5

VQSLOD
type: SiteQuality
SIO_000300: 3.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.221e0

GenotypeQuality
all individuals: 27149
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1838
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18053
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1928
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5982
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.232625074070939e-5
allele num: 47252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4042
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8252
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
type: SiteQuality
SIO_000300: 1.118e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.79e-1

FS
type: SiteQuality
SIO_000300: 4.088e0

DP
type: SiteQuality
SIO_000300: 9.18731e5

BaseQRankSum
type: SiteQuality
SIO_000300: -8.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.86e-1

GenotypeQuality
all individuals: 263
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4830
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1347
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14663
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2513
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.220248667850799e-5
allele num: 45040
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5942
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5688
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.082e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

MQ
type: SiteQuality
SIO_000300: 5.917e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.29e-1

FS
type: SiteQuality
SIO_000300: 1.974e0

QD
type: SiteQuality
SIO_000300: 7.21e0

VQSLOD
type: SiteQuality
SIO_000300: -1.471e0

DP
type: SiteQuality
SIO_000300: 8.53293e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.976e0

GenotypeQuality
all individuals: 1319
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30484
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14992
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5942
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.225189141076992e-5
allele num: 44940
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3866
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

MQRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 2.089e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 7.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

DP
type: SiteQuality
SIO_000300: 8.51567e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2032
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2589
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 164
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1117
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5706
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.310536044362292e-5
allele num: 43280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7152
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.3706e1

DP
type: SiteQuality
SIO_000300: 8.0799e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.17e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.24e-1

QD
type: SiteQuality
SIO_000300: 1.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.338e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35596
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3826
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2576
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4594
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.955416503715291e-4
allele num: 5114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3026
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.2269e5

FS
type: SiteQuality
SIO_000300: 1.729e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.108e0

QD
type: SiteQuality
SIO_000300: 2.317e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.97e-2

GenotypeQuality
all individuals: 7
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 175
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 10374
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2774
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.346720214190094e-4
allele num: 5976
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4426
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.470355731225296e-4
allele num: 4048
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.22e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-2

FS
type: SiteQuality
SIO_000300: 2.945e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

QD
type: SiteQuality
SIO_000300: 1.156e1

DP
type: SiteQuality
SIO_000300: 5.86008e5

GenotypeQuality
all individuals: 15
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2055
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2525
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10476
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 861
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6004
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4468
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.14e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.417e0

DP
type: SiteQuality
SIO_000300: 5.81505e5

QD
type: SiteQuality
SIO_000300: 4.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2202
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2700
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3254
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 3.956177723676202e-3
allele num: 3286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4992
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3218
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.78e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

QD
type: SiteQuality
SIO_000300: 1.195e1

DP
type: SiteQuality
SIO_000300: 5.02606e5

BaseQRankSum
type: SiteQuality
SIO_000300: -5.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.38e0

FS
type: SiteQuality
SIO_000300: 7.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 4917
bin: 1.25e1
variant carriers: 9

GenotypeQuality
all individuals: 18510
bin: 7.5e0
variant carriers: 5

GenotypeQuality
all individuals: 52
bin: 6.75e1
variant carriers: 23

GenotypeQuality
all individuals: 1449
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 28
bin: 8.25e1
variant carriers: 25

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 12

GenotypeQuality
all individuals: 138
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 21

GenotypeQuality
all individuals: 20
bin: 7.25e1
variant carriers: 14

GenotypeQuality
all individuals: 407
bin: 9.75e1
variant carriers: 404

Latino
type: Population
allele count: 16
allele frequency: 4.744958481613286e-3
allele num: 3372
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 4.537205081669692e-3
allele num: 2204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 2.594033722438392e-3
allele num: 1542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2100
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 314
allele frequency: 1.653850205414516e-2
allele num: 18986
num of homozygotes: 1

Other
type: Population
allele count: 2
allele frequency: 9.900990099009901e-3
allele num: 202
num of homozygotes: 0

South Asian
type: Population
allele count: 22
allele frequency: 1.112234580384226e-2
allele num: 1978
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.71e-1

DP
type: SiteQuality
SIO_000300: 4.26269e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.41e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 1.276e1

VQSLOD
type: SiteQuality
SIO_000300: 5.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.186e0

GenotypeQuality
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4977
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2329
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21143
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1938
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.215362177929023e-4
allele num: 16456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1680
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1816
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.395e0

VQSLOD
type: SiteQuality
SIO_000300: 5.05e0

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

QD
type: SiteQuality
SIO_000300: 1.185e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.86e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

DP
type: SiteQuality
SIO_000300: 4.07289e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 19888
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6402
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.341065922771986e-5
allele num: 13622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.853e0

DP
type: SiteQuality
SIO_000300: 3.80235e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.13e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.66e-1

QD
type: SiteQuality
SIO_000300: 5.38e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 26440
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1188
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 217
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 7.672073651907058e-4
allele num: 9124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7582
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.151e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.73e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-2

FS
type: SiteQuality
SIO_000300: 9.88e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.236e0

DP
type: SiteQuality
SIO_000300: 4.12702e5

GenotypeQuality
all individuals: 27255
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3685
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2822
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.64e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.2096e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
all individuals: 493
bin: 2.75e1
variant carriers: 10

GenotypeQuality
all individuals: 27729
bin: 7.5e0
variant carriers: 7

GenotypeQuality
all individuals: 6397
bin: 6.25e1
variant carriers: 9

GenotypeQuality
all individuals: 9146
bin: 2.25e1
variant carriers: 9

GenotypeQuality
all individuals: 487
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 366
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 7

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 60
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1312
bin: 6.75e1
variant carriers: 8

African
type: Population
allele count: 138
allele frequency: 4.808362369337979e-2
allele num: 2870
num of homozygotes: 6

Latino
type: Population
allele count: 3
allele frequency: 5.0e-3
allele num: 600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.155636990730761e-4
allele num: 9278
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.36986301369863e-3
allele num: 730
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.301405517959396e-4
allele num: 7684
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.45263e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.92e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.32e0

QD
type: SiteQuality
SIO_000300: 1.499e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 6496
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9463
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1334
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.494060097833683e-4
allele num: 2862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.062e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.05e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.914e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.41e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.06e0

DP
type: SiteQuality
SIO_000300: 4.40457e5

GenotypeQuality
all individuals: 15649
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7237
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2936
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9770
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.264862130027827e-4
allele num: 7906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.0e-1

DP
type: SiteQuality
SIO_000300: 4.85683e5

MQ
type: SiteQuality
SIO_000300: 5.928e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.73e-2

QD
type: SiteQuality
SIO_000300: 1.445e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.68e0

GenotypeQuality
all individuals: 1905
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1519
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22836
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 66
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7560
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 932
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.250625312656328e-4
allele num: 7996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.314e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.3535e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.17e-2

DP
type: SiteQuality
SIO_000300: 5.16722e5

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

QD
type: SiteQuality
SIO_000300: 9.359999999999999e0

GenotypeQuality
all individuals: 314
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1505
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2077
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8016
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.19379e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.04e-2

MQ
type: SiteQuality
SIO_000300: 5.906e1

VQSLOD
type: SiteQuality
SIO_000300: -8.484e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

QD
type: SiteQuality
SIO_000300: 1.173e1

GenotypeQuality
all individuals: 22341
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2424
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1516
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 356
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7719
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.134088417975886e-5
allele num: 10948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 5.766e1

VQSLOD
type: SiteQuality
SIO_000300: 5.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.71e-2

QD
type: SiteQuality
SIO_000300: 3.74e0

FS
type: SiteQuality
SIO_000300: 3.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.166e0

DP
type: SiteQuality
SIO_000300: 5.36641e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.95e-1

GenotypeQuality
all individuals: 1521
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19121
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2323
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23748
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 926
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.933357155619081e-5
allele num: 11194
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.368e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.276e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.45e-1

QD
type: SiteQuality
SIO_000300: 1.074e1

VQSLOD
type: SiteQuality
SIO_000300: -2.424e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.46759e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.52e-2

GenotypeQuality
all individuals: 1642
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1529
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18151
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7809
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1166
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8112
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 968
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.41e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.384e1

DP
type: SiteQuality
SIO_000300: 5.54177e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3505
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1535
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23420
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7742
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1204
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.130870381966186e-4
allele num: 3194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

FS
type: SiteQuality
SIO_000300: 5.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.37e-2

QD
type: SiteQuality
SIO_000300: 1.543e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.611e0

DP
type: SiteQuality
SIO_000300: 5.56339e5

VQSLOD
type: SiteQuality
SIO_000300: 7.57e-1

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7761
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3554
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23491
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.121098626716604e-4
allele num: 3204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8152
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.34e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.359e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.58014e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

QD
type: SiteQuality
SIO_000300: 1.037e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
all individuals: 425
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7877
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 509
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 360
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.234519104084322e-5
allele num: 12144
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.191176470588235e-4
allele num: 1088
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3290
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 2.180232558139535e-3
allele num: 1376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.12e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.196e0

DP
type: SiteQuality
SIO_000300: 5.74375e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

FS
type: SiteQuality
SIO_000300: 1.7268e1

QD
type: SiteQuality
SIO_000300: 6.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

GenotypeQuality
all individuals: 579
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 27091
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14655
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.559575795383656e-4
allele num: 12824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.712e1

MQ
type: SiteQuality
SIO_000300: 5.98e1

FS
type: SiteQuality
SIO_000300: 1.101e0

VQSLOD
type: SiteQuality
SIO_000300: 3.56e0

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.86e-1

DP
type: SiteQuality
SIO_000300: 5.86036e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.39e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.12e-1

GenotypeQuality
all individuals: 3200
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2045
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 67
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27121
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1156
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8294
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.77e-2

DP
type: SiteQuality
SIO_000300: 5.89732e5

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: -1.018e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.69e-1

QD
type: SiteQuality
SIO_000300: 7.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

FS
type: SiteQuality
SIO_000300: 2.808e0

GenotypeQuality
all individuals: 783
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7877
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14171
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 159
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1162
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 6.134969325153375e-4
allele num: 1630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13106
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.9098e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.466e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

VQSLOD
type: SiteQuality
SIO_000300: -2.318e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.506e0

QD
type: SiteQuality
SIO_000300: 3.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.77e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

GenotypeQuality
all individuals: 14018
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27469
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7931
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.581501137225171e-5
allele num: 13190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.76e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.037e1

FS
type: SiteQuality
SIO_000300: 1.321e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.91e-1

DP
type: SiteQuality
SIO_000300: 5.9329e5

GenotypeQuality
all individuals: 67
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2823
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7957
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 158
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13272
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.893518518518518e-4
allele num: 3456
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.202212070209185e-4
allele num: 8318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1674
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.257e0

DP
type: SiteQuality
SIO_000300: 5.95441e5

QD
type: SiteQuality
SIO_000300: 1.213e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.69e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.179e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 845
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13262
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3301
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2216
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1533
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.858776443682104e-4
allele num: 3498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.11e0

MQRankSum
type: SiteQuality
SIO_000300: -4.74e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.01088e5

QD
type: SiteQuality
SIO_000300: 1.577e1

FS
type: SiteQuality
SIO_000300: 2.077e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.64e-2

GenotypeQuality
all individuals: 1522
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7902
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12843
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2349
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 225
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 66
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27962
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 5.512679162072767e-4
allele num: 1814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13990
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.829654782116582e-4
allele num: 3534
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.06328e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.26e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

FS
type: SiteQuality
SIO_000300: 2.444e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.357e1

GenotypeQuality
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12843
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1522
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2349
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.429592566118656e-4
allele num: 13990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.189060642092747e-4
allele num: 8410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1234
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 5.512679162072767e-4
allele num: 1814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3534
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.26e-2

QD
type: SiteQuality
SIO_000300: 1.357e1

DP
type: SiteQuality
SIO_000300: 6.06328e5

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

FS
type: SiteQuality
SIO_000300: 2.444e0

GenotypeQuality
all individuals: 1505
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 347
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 811
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13016
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5036
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 974
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 68
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 7654
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 173
bin: 5.25e1
variant carriers: 2

African
type: Population
allele count: 24
allele frequency: 6.857142857142857e-3
allele num: 3500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 2.193944712593243e-4
allele num: 13674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.03881e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

FS
type: SiteQuality
SIO_000300: 3.221e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.294e1

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 130
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12393
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7880
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.029866117404737e-3
allele num: 1942
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.52e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.338e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 9.82e0

DP
type: SiteQuality
SIO_000300: 6.10035e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

GenotypeQuality
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 119
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2970
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2136
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.35072872590503e-4
allele num: 8508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15002
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.23549e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.74e-1

QD
type: SiteQuality
SIO_000300: 9.380000000000001e0

FS
type: SiteQuality
SIO_000300: 1.637e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.24e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.422e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.91e0

GenotypeQuality
all individuals: 136
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1480
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8384
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2764
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.169043722235212e-4
allele num: 8554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 7.27802037845706e-4
allele num: 1374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2308
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.648305084745763e-4
allele num: 3776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15586
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 1.069e1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

DP
type: SiteQuality
SIO_000300: 6.3352e5

FS
type: SiteQuality
SIO_000300: 2.241e0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.15e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 904
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1483
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15694
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1382
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.631578947368421e-4
allele num: 3800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.794e0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 6.34474e5

QD
type: SiteQuality
SIO_000300: 1.278e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.77e0

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.13e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.95e-1

GenotypeQuality
all individuals: 165
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32920
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9890
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2056
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8655
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1484
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15876
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 7.142857142857143e-4
allele num: 1400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.01e-2

DP
type: SiteQuality
SIO_000300: 6.35181e5

FS
type: SiteQuality
SIO_000300: 9.788e0

QD
type: SiteQuality
SIO_000300: 1.375e1

GenotypeQuality
all individuals: 205
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 144
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8650
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1481
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.608e0

MQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

DP
type: SiteQuality
SIO_000300: 6.35066e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.08e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.017e0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8603
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15748
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.166316771635176e-4
allele num: 8574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3806
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.312e1

FS
type: SiteQuality
SIO_000300: 5.32e-1

DP
type: SiteQuality
SIO_000300: 6.35425e5

ClippingRankSum
type: SiteQuality
SIO_000300: -6.909999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

GenotypeQuality
all individuals: 575
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32539
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2137
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 205
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 144
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1478
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.350012700025399e-5
allele num: 15748
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3806
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1384
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.35425e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 1.312e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.909999999999999e-1

GenotypeQuality
all individuals: 216
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10121
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 338
bin: 7.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3792
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.668534080298786e-4
allele num: 8568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.645502645502645e-3
allele num: 378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 6.962025316455696e-4
allele num: 15800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2330
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.42e0

QD
type: SiteQuality
SIO_000300: 1.201e1

FS
type: SiteQuality
SIO_000300: 2.471e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.35e-1

DP
type: SiteQuality
SIO_000300: 6.34314e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 60
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32330
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1477
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8508
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 880
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.329113924050633e-5
allele num: 15800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1378
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

FS
type: SiteQuality
SIO_000300: 2.471e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.201e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

DP
type: SiteQuality
SIO_000300: 6.34314e5

GenotypeQuality
all individuals: 686
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 132
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.887979861548143e-4
allele num: 15890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.128e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.45e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.24e-2

FS
type: SiteQuality
SIO_000300: 5.624e0

DP
type: SiteQuality
SIO_000300: 6.30676e5

GenotypeQuality
all individuals: 634
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 10917
bin: 7.5e0
variant carriers: 5

GenotypeQuality
all individuals: 804
bin: 2.75e1
variant carriers: 6

GenotypeQuality
all individuals: 135
bin: 8.25e1
variant carriers: 12

GenotypeQuality
all individuals: 1028
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 24

GenotypeQuality
all individuals: 114
bin: 5.75e1
variant carriers: 18

GenotypeQuality
all individuals: 601
bin: 9.75e1
variant carriers: 428

GenotypeQuality
all individuals: 1443
bin: 6.75e1
variant carriers: 17

European (Non-Finnish)
type: Population
allele count: 220
allele frequency: 1.365441906653426e-2
allele num: 16112
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 7.971014492753623e-3
allele num: 1380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 8.968609865470852e-3
allele num: 446
num of homozygotes: 0

South Asian
type: Population
allele count: 200
allele frequency: 2.308935580697298e-2
allele num: 8662
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2340
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 2.365930599369085e-3
allele num: 3804
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 1.538461538461539e-2
allele num: 260
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.92e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.18e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

QD
type: SiteQuality
SIO_000300: 1.262e1

VQSLOD
type: SiteQuality
SIO_000300: 5.9e0

DP
type: SiteQuality
SIO_000300: 6.4766e5

GenotypeQuality
all individuals: 439
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11591
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2113
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8354
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1382
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3788
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.15e-1

QD
type: SiteQuality
SIO_000300: 1.028e1

MQRankSum
type: SiteQuality
SIO_000300: 7.92e-1

DP
type: SiteQuality
SIO_000300: 6.22808e5

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.41e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

VQSLOD
type: SiteQuality
SIO_000300: 1.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8219
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12473
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.354855109303508e-5
allele num: 15736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.15553e5

BaseQRankSum
type: SiteQuality
SIO_000300: -8.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.54e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.915e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.951e0

QD
type: SiteQuality
SIO_000300: 8.609999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

GenotypeQuality
all individuals: 8024
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 742
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 325
bin: 7.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 2
allele frequency: 4.464285714285714e-3
allele num: 448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 3.865481252415926e-4
allele num: 15522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.77e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.562e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

FS
type: SiteQuality
SIO_000300: 1.1538e1

DP
type: SiteQuality
SIO_000300: 6.05554e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

QD
type: SiteQuality
SIO_000300: 1.169e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15446
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7660
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27794
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.692514808831449e-4
allele num: 3714
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1270
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.92472e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.07e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-1

QD
type: SiteQuality
SIO_000300: 1.452e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 561
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22026
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1911
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7192
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.449e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.827e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.083e1

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.27e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.266e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 5.40205e5

GenotypeQuality
all individuals: 487
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1117
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1373
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1498
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.12e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.336e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.03098e5

GenotypeQuality
all individuals: 371
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6933
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1442
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.054367745876604e-4
allele num: 3274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8196
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.618e0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 4.94418e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.31e-2

QD
type: SiteQuality
SIO_000300: 4.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

GenotypeQuality
all individuals: 1364
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28359
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6891
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1370
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.224889759921607e-4
allele num: 8164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.726221301570861e-4
allele num: 11586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.16e0

VQSLOD
type: SiteQuality
SIO_000300: -1.089e0

DP
type: SiteQuality
SIO_000300: 4.87532e5

FS
type: SiteQuality
SIO_000300: 2.471e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.55e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

GenotypeQuality
all individuals: 49
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2149
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6612
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7996
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

QD
type: SiteQuality
SIO_000300: 5.43e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.31823e5

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.67e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.473e-1

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6518
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 50
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 8.816120906801007e-4
allele num: 7940
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9136
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.01e-2

FS
type: SiteQuality
SIO_000300: 1.1138e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.758e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.463e1

DP
type: SiteQuality
SIO_000300: 4.12872e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

GenotypeQuality
all individuals: 123
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1267
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.118318049653321e-4
allele num: 8942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.404e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 1.721e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.01587e5

QD
type: SiteQuality
SIO_000300: 2.693e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.173e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.25e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.022e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-2

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5185
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 346
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.529724260055654e-4
allele num: 7906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.309e0

DP
type: SiteQuality
SIO_000300: 3.95003e5

QD
type: SiteQuality
SIO_000300: 1.617e1

MQ
type: SiteQuality
SIO_000300: 6.092e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.37e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.69e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.99e-1

GenotypeQuality
all individuals: 343
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4417
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 9.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.83e0

FS
type: SiteQuality
SIO_000300: 3.077e0

DP
type: SiteQuality
SIO_000300: 3.84072e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.55e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.318e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.428e0

GenotypeQuality
all individuals: 161
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6092
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.577287066246057e-3
allele num: 634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2644
num of homozygotes: 0