15-56958695-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958695
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958695
    reference: chr 15
allele count: 2
allele frequency: 1.649402916144356e-5
allele num: 121256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.1004C>A
  hgvsp: ENSP00000379545.1:p.Ser335Tyr
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1771C>A
  hgvsp: ENSP00000453636.1:p.Pro591Thr
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*529C>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1853C>A
  hgvsp: ENSP00000454111.1:p.Ser618Tyr
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1892C>A
  hgvsp: ENSP00000267807.7:p.Ser631Tyr
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1853C>A
  hgvsp: ENSP00000453045.1:p.Ser618Tyr
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.1004C>A
  hgvsp: ENSP00000454173.1:p.Ser335Tyr
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37466
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser631Tyr
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

15-56958695-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958695
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958695
    reference: chr 15
allele count: 1
allele frequency: 8.247014580721778e-6
allele num: 121256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*529C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1892C>T
  hgvsp: ENSP00000267807.7:p.Ser631Phe
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.1004C>T
  hgvsp: ENSP00000454173.1:p.Ser335Phe
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1771C>T
  hgvsp: ENSP00000453636.1:p.Pro591Ser
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.1004C>T
  hgvsp: ENSP00000379545.1:p.Ser335Phe
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1853C>T
  hgvsp: ENSP00000454111.1:p.Ser618Phe
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1853C>T
  hgvsp: ENSP00000453045.1:p.Ser618Phe
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37466
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser631Phe
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

15-56958707-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958707
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958707
    reference: chr 15
allele count: 4
allele frequency: 3.298969072164949e-5
allele num: 121250
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1841T>C
  hgvsp: ENSP00000453045.1:p.Ile614Thr
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1880T>C
  hgvsp: ENSP00000267807.7:p.Ile627Thr
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.992T>C
  hgvsp: ENSP00000454173.1:p.Ile331Thr
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.992T>C
  hgvsp: ENSP00000379545.1:p.Ile331Thr
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1759T>C
  hgvsp: ENST00000560002.1:c.1759T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1841T>C
  hgvsp: ENSP00000454111.1:p.Ile614Thr
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*517T>C
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3179
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11110
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile627Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum

15-56958717-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958717
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958717
    reference: chr 15
allele count: 1
allele frequency: 8.248375070111188e-6
allele num: 121236
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.1009C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1749C>T
  hgvsp: ENST00000560002.1:c.1749C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1831C>T
  hgvsp: ENSP00000454111.1:p.His611Tyr
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.982C>T
  hgvsp: ENSP00000454173.1:p.His328Tyr
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1831C>T
  hgvsp: ENSP00000453045.1:p.His611Tyr
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1870C>T
  hgvsp: ENSP00000267807.7:p.His624Tyr
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.982C>T
  hgvsp: ENSP00000379545.1:p.His328Tyr
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*507C>T
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16293
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2884
  bin: 7.25e1
  variant carriers: 0
hgvs: p.His624Tyr
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

15-56958720-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958720
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958720
    reference: chr 15
allele count: 1
allele frequency: 8.25000825000825e-6
allele num: 121212
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1828A>G
  hgvsp: ENSP00000454111.1:p.Ile610Val
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.979A>G
  hgvsp: ENSP00000454173.1:p.Ile327Val
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1867A>G
  hgvsp: ENSP00000267807.7:p.Ile623Val
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.1006A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1828A>G
  hgvsp: ENSP00000453045.1:p.Ile610Val
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.979A>G
  hgvsp: ENSP00000379545.1:p.Ile327Val
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1746A>G
  hgvsp: ENST00000560002.1:c.1746A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*504A>G
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile623Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP

15-56958723-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958723
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958723
    reference: chr 15
allele count: 1
allele frequency: 8.252459232851389e-6
allele num: 121176
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1864G>A
  hgvsp: ENSP00000267807.7:p.Gly622Ser
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*501G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1743G>A
  hgvsp: ENST00000560002.1:c.1743G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1825G>A
  hgvsp: ENSP00000453045.1:p.Gly609Ser
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.976G>A
  hgvsp: ENSP00000379545.1:p.Gly326Ser
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.976G>A
  hgvsp: ENSP00000454173.1:p.Gly326Ser
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.1003G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1825G>A
  hgvsp: ENSP00000454111.1:p.Gly609Ser
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3171
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37206
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly622Ser
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-56958726-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958726
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958726
    reference: chr 15
allele count: 6
allele frequency: 4.951475539710834e-5
allele num: 121176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.973C>T
  hgvsp: ENSP00000454173.1:p.Arg325Trp
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.973C>T
  hgvsp: ENSP00000379545.1:p.Arg325Trp
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*498C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1822C>T
  hgvsp: ENSP00000453045.1:p.Arg608Trp
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1740C>T
  hgvsp: ENST00000560002.1:c.1740C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.1000C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1822C>T
  hgvsp: ENSP00000454111.1:p.Arg608Trp
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1861C>T
  hgvsp: ENSP00000267807.7:p.Arg621Trp
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7974
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2787
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3167
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg621Trp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

15-56958727-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958727
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958727
    reference: chr 15
allele count: 1
allele frequency: 8.254230293025175e-6
allele num: 121150
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.972T>C
  hgvsp: ENST00000558067.1:c.972T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*497T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.972T>C
  hgvsp: ENST00000396245.1:c.972T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1860T>C
  hgvsp: ENST00000267807.7:c.1860T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1821T>C
  hgvsp: ENST00000559000.1:c.1821T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.999T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1739T>C
  hgvsp: ENSP00000453636.1:p.Val580Ala
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1821T>C
  hgvsp: ENST00000559237.1:c.1821T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2782
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2865
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val580Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

15-56958728-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958728
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958728
    reference: chr 15
allele count: 3
allele frequency: 2.476718842876956e-5
allele num: 121128
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1820G>A
  hgvsp: ENSP00000453045.1:p.Arg607His
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*496G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1859G>A
  hgvsp: ENSP00000267807.7:p.Arg620His
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.971G>A
  hgvsp: ENSP00000379545.1:p.Arg324His
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1738G>A
  hgvsp: ENSP00000453636.1:p.Val580Ile
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1820G>A
  hgvsp: ENSP00000454111.1:p.Arg607His
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.998G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.971G>A
  hgvsp: ENSP00000454173.1:p.Arg324His
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11061
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg620His
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum

15-56958740-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958740
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958740
    reference: chr 15
allele count: 1
allele frequency: 8.33625102119075e-6
allele num: 119958
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*491-7C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.966-7C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1733-7C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1854-7C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.966-7C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.986C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1815-7C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1815-7C>T
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2770
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10407
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1854-7C>T
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

15-56958745-ATT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958745
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958743
    reference: chr 15
allele count: 2
allele frequency: 1.691904238220117e-5
allele num: 118210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1733-14_1733-13delAA
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.979_980delAA
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1815-14_1815-13delAA
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*491-14_*491-13delAA
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.966-14_966-13delAA
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1854-14_1854-13delAA
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.966-14_966-13delAA
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1815-14_1815-13delAA
  variant of: http://identifiers.org/hgnc/25953
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29733
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: ATT
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

15-56958746-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958746
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958746
    reference: chr 15
allele count: 2
allele frequency: 1.692534231504832e-5
allele num: 118166
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*491-13A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.980A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1733-13A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1854-13A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1815-13A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1815-13A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.966-13A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.966-13A>G
  variant of: http://identifiers.org/hgnc/25953
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13944
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2767
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/15-56958751-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958751
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958751
    reference: chr 15
allele count: 3
allele frequency: 2.728562593225889e-5
allele num: 109948
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.966-18T>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1854-18T>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1815-18T>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1733-18T>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*491-18T>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1815-18T>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.975T>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.966-18T>G
  variant of: http://identifiers.org/hgnc/25953
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9933
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5420
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13722
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5919
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

15-56958755-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958755
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958755
    reference: chr 15
allele count: 2
allele frequency: 1.816167523292348e-5
allele num: 110122
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1815-22A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1815-22A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*491-22A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1854-22A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1733-22A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.966-22A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.971A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.966-22A>G
  variant of: http://identifiers.org/hgnc/25953
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9975
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13899
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2922
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2653
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1665
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

15-56958783-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958783
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958783
    reference: chr 15
allele count: 1
allele frequency: 1.228169290855052e-5
allele num: 81422
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.966-50T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1733-50T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1854-50T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.966-50T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*491-50T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.943T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1815-50T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1815-50T>C
  variant of: http://identifiers.org/hgnc/25953
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9086
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8343
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9974
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2253
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6951
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4893
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2957
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3219
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

15-56958833-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958833
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958833
    reference: chr 15
allele count: 1
allele frequency: 1.461988304093567e-5
allele num: 68400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1814+44A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*490+44A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1814+44A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.965+44A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.965+44A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1853+44A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1733-100A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.893A>G
  variant of: http://identifiers.org/hgnc/25953
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9574
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14648
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7609
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7906
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3696
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13569
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4209
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/15-56958838-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958838
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958838
    reference: chr 15
allele count: 1
allele frequency: 1.450578780933592e-5
allele num: 68938
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1733-105T>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1814+39T>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1853+39T>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.965+39T>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.888T>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.965+39T>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1814+39T>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*490+39T>G
  variant of: http://identifiers.org/hgnc/25953
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6800
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14663
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17049
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7591
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4269
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4250
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6606
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-56958840-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958840
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958840
    reference: chr 15
allele count: 1
allele frequency: 1.448561578352696e-5
allele num: 69034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1814+37C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1853+37C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.965+37C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1814+37C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.886C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1733-107C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*490+37C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.965+37C>T
  variant of: http://identifiers.org/hgnc/25953
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7641
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6181
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7033
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

15-56958850-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958850
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958850
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 71714
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.876A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.965+27A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1814+27A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.965+27A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1853+27A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*490+27A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1733-117A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1814+27A>G
  variant of: http://identifiers.org/hgnc/25953
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20608
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3738
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4131
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5574
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

15-56958853-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958853
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958853
    reference: chr 15
allele count: 1
allele frequency: 1.358917214763277e-5
allele num: 73588
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1853+24A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1733-120A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1814+24A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.965+24A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.873A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1814+24A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*490+24A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.965+24A>G
  variant of: http://identifiers.org/hgnc/25953
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4869
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12814
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20649
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11409
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5235
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3270
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2825
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

15-56958856-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958856
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958856
    reference: chr 15
allele count: 1
allele frequency: 1.312887301754017e-5
allele num: 76168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1733-123T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1814+21T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.870T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.965+21T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1853+21T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.965+21T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*490+21T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1814+21T>C
  variant of: http://identifiers.org/hgnc/25953
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20078
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13394
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5036
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3832
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum

15-56958872-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958872
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958872
    reference: chr 15
allele count: 1
allele frequency: 1.067372555716847e-5
allele num: 93688
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.965+5T>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1814+5T>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.854T>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.965+5T>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1814+5T>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1853+5T>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1732+126T>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*490+5T>A
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13016
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7734
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1853+5T>A
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

15-56958900-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958900
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958900
    reference: chr 15
allele count: 11
allele frequency: 9.67645454705396e-5
allele num: 113678
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1791C>G
  hgvsp: ENST00000559000.1:c.1791C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1830C>G
  hgvsp: ENST00000267807.7:c.1830C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1791C>G
  hgvsp: ENST00000559237.1:c.1791C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.826C>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*467C>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.942C>G
  hgvsp: ENST00000558067.1:c.942C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.942C>G
  hgvsp: ENST00000396245.1:c.942C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1732+98C>G
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40476
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8191
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4221
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val610Val
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

15-56958914-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958914
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958914
    reference: chr 15
allele count: 1
allele frequency: 8.571624494274155e-6
allele num: 116664
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.928A>G
  hgvsp: ENSP00000379545.1:p.Lys310Glu
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*453A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.812A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1777A>G
  hgvsp: ENSP00000454111.1:p.Lys593Glu
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1816A>G
  hgvsp: ENSP00000267807.7:p.Lys606Glu
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.928A>G
  hgvsp: ENSP00000454173.1:p.Lys310Glu
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1732+84A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1777A>G
  hgvsp: ENSP00000453045.1:p.Lys593Glu
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4649
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys606Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-56958917-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958917
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958917
    reference: chr 15
allele count: 1
allele frequency: 8.523695874531197e-6
allele num: 117320
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.925A>C
  hgvsp: ENSP00000454173.1:p.Asn309His
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.925A>C
  hgvsp: ENSP00000379545.1:p.Asn309His
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1774A>C
  hgvsp: ENSP00000453045.1:p.Asn592His
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1774A>C
  hgvsp: ENSP00000454111.1:p.Asn592His
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1732+81A>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1813A>C
  hgvsp: ENSP00000267807.7:p.Asn605His
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.809A>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*450A>C
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41822
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4723
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1842
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn605His
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

15-56958920-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958920
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958920
    reference: chr 15
allele count: 6
allele frequency: 5.090526530127433e-5
allele num: 117866
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1771A>G
  hgvsp: ENSP00000454111.1:p.Ser591Gly
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1810A>G
  hgvsp: ENSP00000267807.7:p.Ser604Gly
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1771A>G
  hgvsp: ENSP00000453045.1:p.Ser591Gly
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1732+78A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.922A>G
  hgvsp: ENSP00000379545.1:p.Ser308Gly
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*447A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.922A>G
  hgvsp: ENSP00000454173.1:p.Ser308Gly
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.806A>G
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9554
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser604Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

15-56958922-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958922
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958922
    reference: chr 15
allele count: 333
allele frequency: 2.815591443307686e-3
allele num: 118270
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.804G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1769G>A
  hgvsp: ENSP00000453045.1:p.Ser590Asn
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.920G>A
  hgvsp: ENSP00000454173.1:p.Ser307Asn
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1769G>A
  hgvsp: ENSP00000454111.1:p.Ser590Asn
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1732+76G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1808G>A
  hgvsp: ENSP00000267807.7:p.Ser603Asn
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.920G>A
  hgvsp: ENSP00000379545.1:p.Ser307Asn
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*445G>A
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 3.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 9665
  bin: 2.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 41786
  bin: 2.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 3.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser603Asn
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

15-56958930-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958930
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958930
    reference: chr 15
allele count: 1
allele frequency: 8.384900471231407e-6
allele num: 119262
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1800A>G
  hgvsp: ENST00000267807.7:c.1800A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.912A>G
  hgvsp: ENST00000396245.1:c.912A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1732+68A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.912A>G
  hgvsp: ENST00000558067.1:c.912A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.796A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1761A>G
  hgvsp: ENST00000559237.1:c.1761A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1761A>G
  hgvsp: ENST00000559000.1:c.1761A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*437A>G
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3041
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr600Thr
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

15-56958933-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958933
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958933
    reference: chr 15
allele count: 1
allele frequency: 8.37058242512514e-6
allele num: 119466
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*434C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1758C>T
  hgvsp: ENST00000559237.1:c.1758C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1758C>T
  hgvsp: ENST00000559000.1:c.1758C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1797C>T
  hgvsp: ENST00000267807.7:c.1797C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.793C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.909C>T
  hgvsp: ENST00000396245.1:c.909C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.909C>T
  hgvsp: ENST00000558067.1:c.909C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1732+65C>T
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3603
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4986
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser599Ser
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

15-56958937-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958937
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958937
    reference: chr 15
allele count: 1
allele frequency: 8.356452852893003e-6
allele num: 119668
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1754A>C
  hgvsp: ENSP00000453045.1:p.Gln585Pro
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1754A>C
  hgvsp: ENSP00000454111.1:p.Gln585Pro
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*430A>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1793A>C
  hgvsp: ENSP00000267807.7:p.Gln598Pro
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.905A>C
  hgvsp: ENSP00000379545.1:p.Gln302Pro
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.905A>C
  hgvsp: ENSP00000454173.1:p.Gln302Pro
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.789A>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1732+61A>C
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln598Pro
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-56958938-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958938
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958938
    reference: chr 15
allele count: 3
allele frequency: 2.505512126678693e-5
allele num: 119736
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1753C>G
  hgvsp: ENSP00000453045.1:p.Gln585Glu
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1792C>G
  hgvsp: ENSP00000267807.7:p.Gln598Glu
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.904C>G
  hgvsp: ENSP00000379545.1:p.Gln302Glu
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1732+60C>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.904C>G
  hgvsp: ENSP00000454173.1:p.Gln302Glu
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*429C>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.788C>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1753C>G
  hgvsp: ENSP00000454111.1:p.Gln585Glu
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10135
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3060
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1427
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln598Glu
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

15-56958939-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958939
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958939
    reference: chr 15
allele count: 1
allele frequency: 8.348639171814994e-6
allele num: 119780
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.903A>G
  hgvsp: ENST00000396245.1:c.903A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.903A>G
  hgvsp: ENST00000558067.1:c.903A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.787A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1752A>G
  hgvsp: ENST00000559237.1:c.1752A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1752A>G
  hgvsp: ENST00000559000.1:c.1752A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1791A>G
  hgvsp: ENST00000267807.7:c.1791A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1732+59A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*428A>G
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44574
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5052
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys597Lys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

15-56958940-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958940
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958940
    reference: chr 15
allele count: 10
allele frequency: 8.344598541364176e-5
allele num: 119838
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*427A>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.902A>C
  hgvsp: ENSP00000379545.1:p.Lys301Thr
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1790A>C
  hgvsp: ENSP00000267807.7:p.Lys597Thr
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1751A>C
  hgvsp: ENSP00000453045.1:p.Lys584Thr
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.786A>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.902A>C
  hgvsp: ENSP00000454173.1:p.Lys301Thr
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1732+58A>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1751A>C
  hgvsp: ENSP00000454111.1:p.Lys584Thr
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2129
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys597Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

15-56958945-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958945
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958945
    reference: chr 15
allele count: 1
allele frequency: 8.330556481172942e-6
allele num: 120040
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.897A>G
  hgvsp: ENST00000396245.1:c.897A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.897A>G
  hgvsp: ENST00000558067.1:c.897A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1746A>G
  hgvsp: ENST00000559237.1:c.1746A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*422A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1732+53A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.781A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1785A>G
  hgvsp: ENST00000267807.7:c.1785A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1746A>G
  hgvsp: ENST00000559000.1:c.1746A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5086
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln595Gln
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/15-56958949-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958949
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958949
    reference: chr 15
allele count: 3
allele frequency: 2.495757212738345e-5
allele num: 120204
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.893T>G
  hgvsp: ENSP00000454173.1:p.Met298Arg
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1742T>G
  hgvsp: ENSP00000454111.1:p.Met581Arg
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.893T>G
  hgvsp: ENSP00000379545.1:p.Met298Arg
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.777T>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1742T>G
  hgvsp: ENSP00000453045.1:p.Met581Arg
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1781T>G
  hgvsp: ENSP00000267807.7:p.Met594Arg
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*418T>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1732+49T>G
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5120
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Met594Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-56958980-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958980
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958980
    reference: chr 15
allele count: 1
allele frequency: 8.274720728175424e-6
allele num: 120850
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1750A>T
  hgvsp: ENSP00000267807.7:p.Lys584Ter
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.862A>T
  hgvsp: ENSP00000454173.1:p.Lys288Ter
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1711A>T
  hgvsp: ENSP00000454111.1:p.Lys571Ter
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1711A>T
  hgvsp: ENSP00000453045.1:p.Lys571Ter
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.862A>T
  hgvsp: ENSP00000379545.1:p.Lys288Ter
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.746A>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*387A>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1732+18A>T
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5239
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys584Ter
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

15-56958985-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958985
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958985
    reference: chr 15
allele count: 1
allele frequency: 8.267605866693123e-6
allele num: 120954
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.857G>A
  hgvsp: ENSP00000454173.1:p.Gly286Glu
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.857G>A
  hgvsp: ENSP00000379545.1:p.Gly286Glu
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1732+13G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1745G>A
  hgvsp: ENSP00000267807.7:p.Gly582Glu
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*382G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1706G>A
  hgvsp: ENSP00000454111.1:p.Gly569Glu
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.741G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1706G>A
  hgvsp: ENSP00000453045.1:p.Gly569Glu
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly582Glu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP

15-56958987-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56958987
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56958987
    reference: chr 15
allele count: 1
allele frequency: 8.266239026567692e-6
allele num: 120974
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.855T>C
  hgvsp: ENST00000396245.1:c.855T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.739T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1732+11T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1704T>C
  hgvsp: ENST00000559237.1:c.1704T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1743T>C
  hgvsp: ENST00000267807.7:c.1743T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*380T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.855T>C
  hgvsp: ENST00000558067.1:c.855T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1704T>C
  hgvsp: ENST00000559000.1:c.1704T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn581Asn
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

15-56959006-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959006
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959006
    reference: chr 15
allele count: 1
allele frequency: 8.260912665631299e-6
allele num: 121052
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*361C>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.836C>G
  hgvsp: ENSP00000454173.1:p.Pro279Arg
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.720C>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.836C>G
  hgvsp: ENSP00000379545.1:p.Pro279Arg
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1724C>G
  hgvsp: ENSP00000453636.1:p.Pro575Arg
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1724C>G
  hgvsp: ENSP00000267807.7:p.Pro575Arg
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1685C>G
  hgvsp: ENSP00000453045.1:p.Pro562Arg
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1685C>G
  hgvsp: ENSP00000454111.1:p.Pro562Arg
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro575Arg
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

15-56959016-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959016
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959016
    reference: chr 15
allele count: 1
allele frequency: 8.260503229856763e-6
allele num: 121058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.826G>A
  hgvsp: ENSP00000379545.1:p.Ala276Thr
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.710G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*351G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1714G>A
  hgvsp: ENSP00000453636.1:p.Ala572Thr
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1714G>A
  hgvsp: ENSP00000267807.7:p.Ala572Thr
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.826G>A
  hgvsp: ENSP00000454173.1:p.Ala276Thr
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1675G>A
  hgvsp: ENSP00000454111.1:p.Ala559Thr
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1675G>A
  hgvsp: ENSP00000453045.1:p.Ala559Thr
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala572Thr
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

15-56959017-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959017
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959017
    reference: chr 15
allele count: 9
allele frequency: 7.434575733544805e-5
allele num: 121056
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1674C>T
  hgvsp: ENST00000559000.1:c.1674C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.825C>T
  hgvsp: ENST00000396245.1:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*350C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1674C>T
  hgvsp: ENST00000559237.1:c.1674C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1713C>T
  hgvsp: ENST00000267807.7:c.1713C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.825C>T
  hgvsp: ENST00000558067.1:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.709C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1713C>T
  hgvsp: ENST00000560002.1:c.1713C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45008
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asn571Asn
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

15-56959023-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959023
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959023
    reference: chr 15
allele count: 13
allele frequency: 1.073758982406872e-4
allele num: 121070
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1707A>C
  hgvsp: ENSP00000267807.7:p.Lys569Asn
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1707A>C
  hgvsp: ENSP00000453636.1:p.Lys569Asn
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1668A>C
  hgvsp: ENSP00000453045.1:p.Lys556Asn
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1668A>C
  hgvsp: ENSP00000454111.1:p.Lys556Asn
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.819A>C
  hgvsp: ENSP00000379545.1:p.Lys273Asn
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.819A>C
  hgvsp: ENSP00000454173.1:p.Lys273Asn
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*344A>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.703A>C
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 41912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3155
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2274
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys569Asn
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

15-56959028-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959028
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959028
    reference: chr 15
allele count: 55147
allele frequency: 4.553614189222664e-1
allele num: 121106
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1702G>A
  hgvsp: ENSP00000267807.7:p.Val568Ile
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*339G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1663G>A
  hgvsp: ENSP00000453045.1:p.Val555Ile
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1663G>A
  hgvsp: ENSP00000454111.1:p.Val555Ile
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1702G>A
  hgvsp: ENSP00000453636.1:p.Val568Ile
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.814G>A
  hgvsp: ENSP00000379545.1:p.Val272Ile
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.814G>A
  hgvsp: ENSP00000454173.1:p.Val272Ile
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.698G>A
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 3.75e1
  variant carriers: 536
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.25e1
  variant carriers: 832
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 4.75e1
  variant carriers: 1236
genotype depth: GenotypeDepth
  all individuals: 19607
  bin: 9.75e1
  variant carriers: 19543
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 8.75e1
  variant carriers: 2082
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 9.25e1
  variant carriers: 2044
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 2.75e1
  variant carriers: 188
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 5.75e1
  variant carriers: 1835
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 6.75e1
  variant carriers: 2297
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 3.25e1
  variant carriers: 312
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 7.25e1
  variant carriers: 2383
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 8.25e1
  variant carriers: 2157
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 5.25e1
  variant carriers: 1518
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 6.25e1
  variant carriers: 2180
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 7.75e1
  variant carriers: 2373
genotype depth: GenotypeDepth
  all individuals: 14085
  bin: 2.25e1
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 7.25e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 28
hgvs: p.Val568Ile
num of homozygotes: 13393
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

15-56959031-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959031
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959031
    reference: chr 15
allele count: 5
allele frequency: 4.131958217638503e-5
allele num: 121008
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1660A>G
  hgvsp: ENSP00000453045.1:p.Thr554Ala
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.695A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*336A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.811A>G
  hgvsp: ENSP00000379545.1:p.Thr271Ala
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1699A>G
  hgvsp: ENSP00000267807.7:p.Thr567Ala
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1699A>G
  hgvsp: ENSP00000453636.1:p.Thr567Ala
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.811A>G
  hgvsp: ENSP00000454173.1:p.Thr271Ala
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1660A>G
  hgvsp: ENSP00000454111.1:p.Thr554Ala
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48447
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr567Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

15-56959037-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959037
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959037
    reference: chr 15
allele count: 1
allele frequency: 8.265555775970376e-6
allele num: 120984
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1693C>T
  hgvsp: ENSP00000267807.7:p.Pro565Ser
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1654C>T
  hgvsp: ENSP00000453045.1:p.Pro552Ser
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.689C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.805C>T
  hgvsp: ENSP00000454173.1:p.Pro269Ser
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.805C>T
  hgvsp: ENSP00000379545.1:p.Pro269Ser
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1654C>T
  hgvsp: ENSP00000454111.1:p.Pro552Ser
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*330C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1693C>T
  hgvsp: ENSP00000453636.1:p.Pro565Ser
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6472
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro565Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

15-56959044-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959044
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959044
    reference: chr 15
allele count: 2
allele frequency: 1.653630545863443e-5
allele num: 120946
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1686A>G
  hgvsp: ENST00000267807.7:c.1686A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*323A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1647A>G
  hgvsp: ENST00000559000.1:c.1647A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1647A>G
  hgvsp: ENST00000559237.1:c.1647A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.798A>G
  hgvsp: ENST00000396245.1:c.798A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.798A>G
  hgvsp: ENST00000558067.1:c.798A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1686A>G
  hgvsp: ENST00000560002.1:c.1686A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.682A>G
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25367
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Thr562Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP

15-56959073-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959073
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959073
    reference: chr 15
allele count: 2
allele frequency: 1.662703889064397e-5
allele num: 120286
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.653A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1618A>G
  hgvsp: ENSP00000454111.1:p.Thr540Ala
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1657A>G
  hgvsp: ENSP00000267807.7:p.Thr553Ala
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.769A>G
  hgvsp: ENSP00000454173.1:p.Thr257Ala
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1618A>G
  hgvsp: ENSP00000453045.1:p.Thr540Ala
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*294A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.769A>G
  hgvsp: ENSP00000379545.1:p.Thr257Ala
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1657A>G
  hgvsp: ENSP00000453636.1:p.Thr553Ala
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47844
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr553Ala
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ

15-56959076-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959076
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959076
    reference: chr 15
allele count: 1
allele frequency: 8.323483877411729e-6
allele num: 120142
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1654A>G
  hgvsp: ENSP00000267807.7:p.Ile552Val
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*291A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1615A>G
  hgvsp: ENSP00000453045.1:p.Ile539Val
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.766A>G
  hgvsp: ENSP00000379545.1:p.Ile256Val
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1654A>G
  hgvsp: ENSP00000453636.1:p.Ile552Val
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.650A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1615A>G
  hgvsp: ENSP00000454111.1:p.Ile539Val
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.766A>G
  hgvsp: ENSP00000454173.1:p.Ile256Val
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1427
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile552Val
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-56959079-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959079
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959079
    reference: chr 15
allele count: 1
allele frequency: 8.343623802689983e-6
allele num: 119852
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1651A>G
  hgvsp: ENSP00000267807.7:p.Asn551Asp
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1651A>G
  hgvsp: ENSP00000453636.1:p.Asn551Asp
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.763A>G
  hgvsp: ENSP00000379545.1:p.Asn255Asp
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1612A>G
  hgvsp: ENSP00000453045.1:p.Asn538Asp
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*288A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1612A>G
  hgvsp: ENSP00000454111.1:p.Asn538Asp
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.763A>G
  hgvsp: ENSP00000454173.1:p.Asn255Asp
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.647A>G
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn551Asp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-56959081-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959081
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959081
    reference: chr 15
allele count: 1
allele frequency: 8.347802858287698e-6
allele num: 119792
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1610A>G
  hgvsp: ENSP00000453045.1:p.Lys537Arg
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1610A>G
  hgvsp: ENSP00000454111.1:p.Lys537Arg
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.761A>G
  hgvsp: ENSP00000454173.1:p.Lys254Arg
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1649A>G
  hgvsp: ENSP00000453636.1:p.Lys550Arg
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1649A>G
  hgvsp: ENSP00000267807.7:p.Lys550Arg
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.645A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.761A>G
  hgvsp: ENSP00000379545.1:p.Lys254Arg
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*286A>G
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7827
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1140
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys550Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

15-56959087-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959087
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959087
    reference: chr 15
allele count: 4
allele frequency: 3.356549467147772e-5
allele num: 119170
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.755G>A
  hgvsp: ENSP00000454173.1:p.Arg252Lys
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1604G>A
  hgvsp: ENSP00000454111.1:p.Arg535Lys
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1643G>A
  hgvsp: ENSP00000267807.7:p.Arg548Lys
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.755G>A
  hgvsp: ENSP00000379545.1:p.Arg252Lys
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*280G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1643G>A
  hgvsp: ENSP00000453636.1:p.Arg548Lys
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1604G>A
  hgvsp: ENSP00000453045.1:p.Arg535Lys
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.639G>A
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24248
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg548Lys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD

15-56959101-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959101
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959101
    reference: chr 15
allele count: 1
allele frequency: 8.540147232138282e-6
allele num: 117094
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1590G>C
  hgvsp: ENSP00000453045.1:p.Gln530His
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1590G>C
  hgvsp: ENSP00000454111.1:p.Gln530His
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.741G>C
  hgvsp: ENSP00000454173.1:p.Gln247His
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.625G>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.741G>C
  hgvsp: ENSP00000379545.1:p.Gln247His
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1629G>C
  hgvsp: ENSP00000453636.1:p.Gln543His
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*266G>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1629G>C
  hgvsp: ENSP00000267807.7:p.Gln543His
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23763
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22965
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3244
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln543His
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

15-56959106-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959106
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959106
    reference: chr 15
allele count: 8
allele frequency: 6.895125146521409e-5
allele num: 116024
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1585C>T
  hgvsp: ENSP00000454111.1:p.Leu529Phe
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*261C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1624C>T
  hgvsp: ENSP00000267807.7:p.Leu542Phe
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1624C>T
  hgvsp: ENSP00000453636.1:p.Leu542Phe
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.736C>T
  hgvsp: ENSP00000379545.1:p.Leu246Phe
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.736C>T
  hgvsp: ENSP00000454173.1:p.Leu246Phe
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.620C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1585C>T
  hgvsp: ENSP00000453045.1:p.Leu529Phe
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6372
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23677
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22288
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu542Phe
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

15-56959109-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959109
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959109
    reference: chr 15
allele count: 3
allele frequency: 2.609149417289963e-5
allele num: 114980
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1621A>G
  hgvsp: ENSP00000453636.1:p.Thr541Ala
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.733A>G
  hgvsp: ENSP00000454173.1:p.Thr245Ala
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*258A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.617A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1582A>G
  hgvsp: ENSP00000453045.1:p.Thr528Ala
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.733A>G
  hgvsp: ENSP00000379545.1:p.Thr245Ala
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1582A>G
  hgvsp: ENSP00000454111.1:p.Thr528Ala
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1621A>G
  hgvsp: ENSP00000267807.7:p.Thr541Ala
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21699
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4995
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr541Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

15-56959118-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959118
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959118
    reference: chr 15
allele count: 2
allele frequency: 1.774087675412919e-5
allele num: 112734
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1612A>G
  hgvsp: ENSP00000267807.7:p.Ser538Gly
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1612A>G
  hgvsp: ENSP00000453636.1:p.Ser538Gly
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*249A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.724A>G
  hgvsp: ENSP00000454173.1:p.Ser242Gly
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.608A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.724A>G
  hgvsp: ENSP00000379545.1:p.Ser242Gly
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1573A>G
  hgvsp: ENSP00000453045.1:p.Ser525Gly
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1573A>G
  hgvsp: ENSP00000454111.1:p.Ser525Gly
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23149
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6844
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4679
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser538Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

15-56959132-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959132
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959132
    reference: chr 15
allele count: 25
allele frequency: 2.335139174294788e-4
allele num: 107060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1598C>T
  hgvsp: ENSP00000453636.1:p.Pro533Leu
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.710C>T
  hgvsp: ENSP00000379545.1:p.Pro237Leu
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1598C>T
  hgvsp: ENSP00000267807.7:p.Pro533Leu
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*235C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.710C>T
  hgvsp: ENSP00000454173.1:p.Pro237Leu
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.594C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1559C>T
  hgvsp: ENSP00000454111.1:p.Pro520Leu
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1559C>T
  hgvsp: ENSP00000453045.1:p.Pro520Leu
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4886
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17832
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6042
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20810
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.25e1
  variant carriers: 1
hgvs: p.Pro533Leu
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

15-56959133-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959133
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959133
    reference: chr 15
allele count: 1
allele frequency: 9.411941871846999e-6
allele num: 106248
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1597C>T
  hgvsp: ENSP00000267807.7:p.Pro533Ser
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1597C>T
  hgvsp: ENSP00000453636.1:p.Pro533Ser
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.709C>T
  hgvsp: ENSP00000379545.1:p.Pro237Ser
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.709C>T
  hgvsp: ENSP00000454173.1:p.Pro237Ser
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1558C>T
  hgvsp: ENSP00000454111.1:p.Pro520Ser
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*234C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1558C>T
  hgvsp: ENSP00000453045.1:p.Pro520Ser
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.593C>T
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6754
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro533Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

15-56959144-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959144
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959144
    reference: chr 15
allele count: 3
allele frequency: 3.016894609814964e-5
allele num: 99440
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1586C>T
  hgvsp: ENSP00000453636.1:p.Ala529Val
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1547C>T
  hgvsp: ENSP00000453045.1:p.Ala516Val
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.582C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1547C>T
  hgvsp: ENSP00000454111.1:p.Ala516Val
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.698C>T
  hgvsp: ENSP00000454173.1:p.Ala233Val
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*223C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.698C>T
  hgvsp: ENSP00000379545.1:p.Ala233Val
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1586C>T
  hgvsp: ENSP00000267807.7:p.Ala529Val
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14657
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4009
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1311
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala529Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

15-56959155-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959155
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959155
    reference: chr 15
allele count: 1
allele frequency: 1.075592651551005e-5
allele num: 92972
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.687G>A
  hgvsp: ENST00000396245.1:c.687G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1575G>A
  hgvsp: ENST00000560002.1:c.1575G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1536G>A
  hgvsp: ENST00000559237.1:c.1536G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.687G>A
  hgvsp: ENST00000558067.1:c.687G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.571G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1575G>A
  hgvsp: ENST00000267807.7:c.1575G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1536G>A
  hgvsp: ENST00000559000.1:c.1536G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*212G>A
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12592
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12274
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3504
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25901
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23224
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu525Leu
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

15-56959179-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959179
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959179
    reference: chr 15
allele count: 1
allele frequency: 1.620220349967596e-5
allele num: 61720
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*188T>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1551T>A
  hgvsp: ENST00000560002.1:c.1551T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1551T>A
  hgvsp: ENST00000267807.7:c.1551T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1512T>A
  hgvsp: ENST00000559237.1:c.1512T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.663T>A
  hgvsp: ENST00000558067.1:c.663T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.663T>A
  hgvsp: ENST00000396245.1:c.663T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.547T>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1512T>A
  hgvsp: ENST00000559000.1:c.1512T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8012
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20975
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18043
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8471
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr517Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

15-56959194-T-TCTCTAATATGCAAAAGAAAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959194
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959214
    reference: chr 15
allele count: 1
allele frequency: 2.277178120872615e-5
allele num: 43914
alternate allele: TCTCTAATATGCAAAAGAAAC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15680
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16392
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

15-56959200-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959200
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959200
    reference: chr 15
allele count: 1
allele frequency: 2.664677041142613e-5
allele num: 37528
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1507-16C>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1546-16C>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1546-16C>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.658-16C>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.542-16C>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1507-16C>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*183-16C>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.658-16C>A
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20152
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12944
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19687
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26662
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2963
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

15-56959207-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959207
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959207
    reference: chr 15
allele count: 11
allele frequency: 3.566565073600934e-4
allele num: 30842
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.658-23A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1546-23A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*183-23A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1546-23A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1507-23A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.658-23A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.542-23A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1507-23A>G
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18496
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23977
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10488
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2102
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24661
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-56959222-ATC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959222
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959220
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 19176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1546-40_1546-39delGA
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.542-40_542-39delGA
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1546-40_1546-39delGA
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.658-40_658-39delGA
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1507-40_1507-39delGA
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*183-40_*183-39delGA
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1507-40_1507-39delGA
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.658-40_658-39delGA
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16906
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5096
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: ATC
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

15-56959227-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959227
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959227
    reference: chr 15
allele count: 1
allele frequency: 6.241418050181001e-5
allele num: 16022
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.658-43A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.542-43A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1507-43A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.658-43A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1546-43A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1507-43A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1546-43A>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*183-43A>G
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17579
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4320
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6137
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-56959229-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959229
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959229
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 15626
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1546-45G>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.658-45G>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1507-45G>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.658-45G>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1507-45G>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.542-45G>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1546-45G>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*183-45G>T
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17595
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6239
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6724
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

15-56959229-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959229
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959229
    reference: chr 15
allele count: 1
allele frequency: 6.399590426212723e-5
allele num: 15626
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.658-45G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1546-45G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.658-45G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*183-45G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1507-45G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1507-45G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.542-45G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1546-45G>A
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17595
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6239
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25793
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6724
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

15-56959230-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56959230
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56959230
    reference: chr 15
allele count: 6
allele frequency: 3.96930404869013e-4
allele num: 15116
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1507-46T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.658-46T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.658-46T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.542-46T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1546-46T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1546-46T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1507-46T>C
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.*183-46T>C
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17702
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6782
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 24891
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum

15-56960395-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56960395
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56960395
    reference: chr 15
allele count: 5
allele frequency: 5.231219920485457e-4
allele num: 9558
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.657+626G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1545+626G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.657+626G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1545+626G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1506+626G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1506+626G>A
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.1590G>A
  hgvsp: ENSP00000453124.1:p.Trp530Ter
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.541+626G>A
  variant of: http://identifiers.org/hgnc/25953
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Trp530Ter
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-56960435-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56960435
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56960435
    reference: chr 15
allele count: 2
allele frequency: 3.033060357901122e-4
allele num: 6594
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.541+586C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.1550C>T
  hgvsp: ENSP00000453124.1:p.Ala517Val
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1545+586C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.657+586C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1506+586C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.657+586C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1506+586C>T
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1545+586C>T
  variant of: http://identifiers.org/hgnc/25953
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3329
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1692
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala517Val
num of homozygotes: 1
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/15-56960972-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56960972
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 56960972
    reference: chr 15
allele count: 95
allele frequency: 9.475175041391554e-4
allele num: 100262
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000267807
  ensembl transcript: ENST00000267807
  gene symbol: ZNF280D
  hgvsc: ENST00000267807.7:c.1545+49T>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454111
  ensembl transcript: ENST00000559237
  gene symbol: ZNF280D
  hgvsc: ENST00000559237.1:c.1506+49T>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453636
  ensembl transcript: ENST00000560002
  gene symbol: ZNF280D
  hgvsc: ENST00000560002.1:c.1545+49T>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453045
  ensembl transcript: ENST00000559000
  gene symbol: ZNF280D
  hgvsc: ENST00000559000.1:c.1506+49T>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000454173
  ensembl transcript: ENST00000558067
  gene symbol: ZNF280D
  hgvsc: ENST00000558067.1:c.657+49T>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl transcript: ENST00000560121
  gene symbol: ZNF280D
  hgvsc: ENST00000560121.1:n.541+49T>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000453124
  ensembl transcript: ENST00000558002
  gene symbol: ZNF280D
  hgvsc: ENST00000558002.1:c.1545+49T>G
  variant of: http://identifiers.org/hgnc/25953
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137871
  ensembl protein: ENSP00000379545
  ensembl transcript: ENST00000396245
  gene symbol: ZNF280D
  hgvsc: ENST00000396245.1:c.657+49T>G
  variant of: http://identifiers.org/hgnc/25953
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 8696
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15460
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 12534
  bin: 1.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8980
  bin: 2.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3105
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11111
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3178
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2887
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1721
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2796
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998860433035446e-5
allele num: 66692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -8.107e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.229e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.63e-1

DP
type: SiteQuality
SIO_000300: 1.994852e6

FS
type: SiteQuality
SIO_000300: 1.2411e1

MQRankSum
type: SiteQuality
SIO_000300: 4.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

QD
type: SiteQuality
SIO_000300: 1.192e1

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11111
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3178
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2796
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2887
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.229e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.2411e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

QD
type: SiteQuality
SIO_000300: 1.192e1

DP
type: SiteQuality
SIO_000300: 1.994852e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.63e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.107e-1

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37446
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2793
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 595
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2886
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.469812630117973e-4
allele num: 11528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.336e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.31e-1

QD
type: SiteQuality
SIO_000300: 1.268e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

DP
type: SiteQuality
SIO_000300: 1.994519e6

MQ
type: SiteQuality
SIO_000300: 5.955e1

MQRankSum
type: SiteQuality
SIO_000300: 7.0e-3

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2789
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3177
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11104
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37345
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1715
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.993634e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.633e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.166e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.135e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

QD
type: SiteQuality
SIO_000300: 6.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.82e-1

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2789
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2884
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11100
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37294
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3176
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 792
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.71e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

FS
type: SiteQuality
SIO_000300: 5.399e0

QD
type: SiteQuality
SIO_000300: 1.359e1

DP
type: SiteQuality
SIO_000300: 1.993038e6

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11087
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2788
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2876
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.624639076034648e-5
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.777e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 1.552e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

DP
type: SiteQuality
SIO_000300: 1.992568e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.35e-1

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2869
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11087
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1706
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37211
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.624639076034648e-5
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001110410852015e-5
allele num: 66642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.992326e6

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.859e0

QD
type: SiteQuality
SIO_000300: 1.157e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11067
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37091
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1706
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3167
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.990487e6

FS
type: SiteQuality
SIO_000300: 5.356e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.175e0

MQRankSum
type: SiteQuality
SIO_000300: -1.727e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.37e-1

MQ
type: SiteQuality
SIO_000300: 5.862e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.095e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

QD
type: SiteQuality
SIO_000300: 1.299e1

GenotypeQuality
all individuals: 3163
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2780
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 37091
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1703
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2862
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501411326647048e-5
allele num: 66604
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.926040061633282e-4
allele num: 10384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.66e0

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

FS
type: SiteQuality
SIO_000300: 1.308e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-2

QD
type: SiteQuality
SIO_000300: 1.344e1

DP
type: SiteQuality
SIO_000300: 1.990597e6

MQ
type: SiteQuality
SIO_000300: 5.942e1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 3223
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1680
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33878
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3083
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2761
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.171234481143125e-4
allele num: 8538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10078
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -6.038e0

VQSLOD
type: SiteQuality
SIO_000300: -2.542e0

MQ
type: SiteQuality
SIO_000300: 5.871e1

FS
type: SiteQuality
SIO_000300: 3.748e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.053e0

MQRankSum
type: SiteQuality
SIO_000300: -1.645e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.43e-1

QD
type: SiteQuality
SIO_000300: 1.237e1

DP
type: SiteQuality
SIO_000300: 1.93671e6

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7301
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2919
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2499
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8861
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2768
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.083754779819908e-5
allele num: 64856
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 1.8603e1

QD
type: SiteQuality
SIO_000300: 2.43e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.877e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.556e0

DP
type: SiteQuality
SIO_000300: 1.835294e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1095
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29825
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2916
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7315
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8849
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2496
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.754385964912281e-4
allele num: 11400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.358e0

DP
type: SiteQuality
SIO_000300: 1.834824e6

FS
type: SiteQuality
SIO_000300: 1.1393e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.4e-2

QD
type: SiteQuality
SIO_000300: 1.724e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e0

MQRankSum
type: SiteQuality
SIO_000300: 7.86e-1

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23400
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2654
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2914
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2047
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1486
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1668
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15750
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.336781340718742e-5
allele num: 59938
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6174
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7504
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.157407407407407e-3
allele num: 864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.33e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-1

FS
type: SiteQuality
SIO_000300: 3.885e0

QD
type: SiteQuality
SIO_000300: 1.603e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0

VQSLOD
type: SiteQuality
SIO_000300: 4.8e-1

DP
type: SiteQuality
SIO_000300: 1.545713e6

GenotypeQuality
all individuals: 1647
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5908
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1480
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2038
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24442
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15760
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7508
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.665334399147349e-5
allele num: 60048
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.89e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.01e-1

DP
type: SiteQuality
SIO_000300: 1.540398e6

QD
type: SiteQuality
SIO_000300: 1.367e1

VQSLOD
type: SiteQuality
SIO_000300: 9.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e-1

GenotypeQuality
all individuals: 3576
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2470
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2264
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5192
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7256
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2648
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 967
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2491
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5472
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2166
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6096
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.278008109708871e-5
allele num: 43898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.77e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.557e0

FS
type: SiteQuality
SIO_000300: 9.558e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e-1

QD
type: SiteQuality
SIO_000300: 1.318e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.044e0

MQ
type: SiteQuality
SIO_000300: 4.498e1

DP
type: SiteQuality
SIO_000300: 1.070446e6

GenotypeQuality
all individuals: 1117
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4833
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2235
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2921
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6146
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4407
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1691
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2615
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 513
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.992327365728901e-5
allele num: 12512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35538
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.61e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e0

FS
type: SiteQuality
SIO_000300: 3.701e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.216e0

DP
type: SiteQuality
SIO_000300: 8.99324e5

QD
type: SiteQuality
SIO_000300: 2.0e0

GenotypeQuality
all individuals: 545
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2616
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 573
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1952
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6159
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1707
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17418
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1762
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12484
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.489183531053733e-4
allele num: 2866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2994
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

VQSLOD
type: SiteQuality
SIO_000300: -1.906e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.1678e5

QD
type: SiteQuality
SIO_000300: 1.639e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.33e-1

GenotypeQuality
all individuals: 4179
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18459
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4269
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7138
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1657
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6125
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2617
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.788311398616998e-5
allele num: 35864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5968
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12500
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e0

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

QD
type: SiteQuality
SIO_000300: 1.309e1

DP
type: SiteQuality
SIO_000300: 9.24501e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.143e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.404e0

VQSLOD
type: SiteQuality
SIO_000300: 9.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-2

GenotypeQuality
all individuals: 786
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3516
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22658
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10381
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2621
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1376
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 5.763e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.109e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

DP
type: SiteQuality
SIO_000300: 9.83788e5

GenotypeQuality
all individuals: 611
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12032
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3987
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22835
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1009
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1535
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2622
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12668
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38356
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.192748091603053e-4
allele num: 8384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

QD
type: SiteQuality
SIO_000300: 1.203e1

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.245e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.323e0

DP
type: SiteQuality
SIO_000300: 1.011788e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.43e-1

GenotypeQuality
all individuals: 212
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22200
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3064
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1669
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2624
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3708
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.478852410529429e-4
allele num: 6762
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.168e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

FS
type: SiteQuality
SIO_000300: 4.752e0

QD
type: SiteQuality
SIO_000300: 1.186e1

MQ
type: SiteQuality
SIO_000300: 5.461e1

DP
type: SiteQuality
SIO_000300: 1.041984e6

MQRankSum
type: SiteQuality
SIO_000300: -8.179999999999999e-1

GenotypeQuality
all individuals: 231
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2364
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14973
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3009
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2674
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 928
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1817
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26370
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2650
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6698
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.185677021579322e-4
allele num: 8434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

VQSLOD
type: SiteQuality
SIO_000300: -7.779999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.230733e6

FS
type: SiteQuality
SIO_000300: 3.399e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.036e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.81e-1

QD
type: SiteQuality
SIO_000300: 1.39e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4085
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1560
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41709
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2794
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 429
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8132
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.115844998985595e-3
allele num: 9858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10964
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-1

QD
type: SiteQuality
SIO_000300: 1.512e1

FS
type: SiteQuality
SIO_000300: 8.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

MQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

DP
type: SiteQuality
SIO_000300: 1.468394e6

GenotypeQuality
all individuals: 290
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2416
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42991
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2832
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1456
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1814
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.571931589537223e-5
allele num: 63616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16164
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.084e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 9.630000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 1.511064e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e0

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2056
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1275
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43680
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2836
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56137775973519e-5
allele num: 64046
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16232
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e0

VQSLOD
type: SiteQuality
SIO_000300: -1.703e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.836e1

DP
type: SiteQuality
SIO_000300: 1.520185e6

GenotypeQuality
all individuals: 110
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2854
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1527
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43882
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4804
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1734
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11268
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10104
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.684598378776713e-4
allele num: 16284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

DP
type: SiteQuality
SIO_000300: 1.52969e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-2

QD
type: SiteQuality
SIO_000300: 1.273e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: 4.3e0

GenotypeQuality
all individuals: 179
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 170
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3174
bin: 9.75e1
variant carriers: 331

GenotypeQuality
all individuals: 43901
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1523
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4797
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 289
allele frequency: 4.46483747373625e-3
allele num: 64728
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.771793054571226e-4
allele num: 11288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.959747434885557e-4
allele num: 10136
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.453385672227674e-4
allele num: 16304
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.257336343115124e-3
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 33
allele frequency: 5.067567567567568e-3
allele num: 6512
num of homozygotes: 1

DP
type: SiteQuality
SIO_000300: 1.542874e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.158e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-2

FS
type: SiteQuality
SIO_000300: 6.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.221e0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4965
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44394
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1392
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2066
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529800514012973e-5
allele num: 65368
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.05e-1

FS
type: SiteQuality
SIO_000300: 1.229e0

DP
type: SiteQuality
SIO_000300: 1.55642e6

QD
type: SiteQuality
SIO_000300: 1.599e1

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.3e0

GenotypeQuality
all individuals: 106
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2077
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1407
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3046
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44519
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1621
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.793527963418924e-5
allele num: 11372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.559806e6

FS
type: SiteQuality
SIO_000300: 3.872e0

MQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.391e0

VQSLOD
type: SiteQuality
SIO_000300: -2.448e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

QD
type: SiteQuality
SIO_000300: 4.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.32e-1

GenotypeQuality
all individuals: 115
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2124
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5029
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1436
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3058
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44477
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523136442562525e-5
allele num: 65654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.313e0

QD
type: SiteQuality
SIO_000300: 1.175e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.67e0

VQSLOD
type: SiteQuality
SIO_000300: 8.56e-1

DP
type: SiteQuality
SIO_000300: 1.562925e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1659
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44552
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5025
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.565654106044926e-5
allele num: 65708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

FS
type: SiteQuality
SIO_000300: 4.261e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 1.564072e6

QD
type: SiteQuality
SIO_000300: 1.793e1

VQSLOD
type: SiteQuality
SIO_000300: -3.736e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.622e0

GenotypeQuality
all individuals: 82
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3064
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2123
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1439
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1662
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65746
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.079766536964981e-5
allele num: 16448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

MQRankSum
type: SiteQuality
SIO_000300: 7.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.564628e6

FS
type: SiteQuality
SIO_000300: 3.158e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.65e-1

QD
type: SiteQuality
SIO_000300: 1.414e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.35e0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1667
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3073
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 100
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44550
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5060
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65786
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.078288353999514e-4
allele num: 16452
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e0

FS
type: SiteQuality
SIO_000300: 2.891e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.212e1

DP
type: SiteQuality
SIO_000300: 1.565562e6

GenotypeQuality
all individuals: 600
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1463
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44640
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2157
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3079
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 77
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516806212838248e-5
allele num: 65928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.159e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.933e1

DP
type: SiteQuality
SIO_000300: 1.568862e6

QD
type: SiteQuality
SIO_000300: 1.115e1

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2178
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3091
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1688
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44655
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1487
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66046
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.819505094614265e-4
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.572253e6

MQRankSum
type: SiteQuality
SIO_000300: -1.085e0

FS
type: SiteQuality
SIO_000300: 1.743e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.17e-1

QD
type: SiteQuality
SIO_000300: 1.497e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.06e-1

GenotypeQuality
all individuals: 1733
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45001
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3120
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.583398e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.17e-1

FS
type: SiteQuality
SIO_000300: 1.936e0

MQRankSum
type: SiteQuality
SIO_000300: -4.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.85e0

QD
type: SiteQuality
SIO_000300: 1.116e1

MQ
type: SiteQuality
SIO_000300: 5.982e1

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1562
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1740
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5249
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45036
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3124
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2251
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.715356458079135e-5
allele num: 11474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.402e0

MQRankSum
type: SiteQuality
SIO_000300: -8.29e-1

FS
type: SiteQuality
SIO_000300: 2.921e0

VQSLOD
type: SiteQuality
SIO_000300: -3.068e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.608e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-1

QD
type: SiteQuality
SIO_000300: 1.888e1

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 1.584122e6

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1564
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2255
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45039
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3128
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 634
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5249
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.712319219376198e-5
allele num: 11478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.14e0

DP
type: SiteQuality
SIO_000300: 1.584336e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.919e1

VQSLOD
type: SiteQuality
SIO_000300: -1.298e0

MQRankSum
type: SiteQuality
SIO_000300: -1.483e0

QD
type: SiteQuality
SIO_000300: 1.099e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.33e0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45041
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1569
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3133
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5261
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1746
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2267
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501185936890143e-5
allele num: 66614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.853e0

MQRankSum
type: SiteQuality
SIO_000300: -4.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.99e0

VQSLOD
type: SiteQuality
SIO_000300: 9.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.401e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-2

DP
type: SiteQuality
SIO_000300: 1.585444e6

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3137
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2269
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45032
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1572
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.697164724299878e-5
allele num: 11498
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.914e1

QD
type: SiteQuality
SIO_000300: 4.87e0

FS
type: SiteQuality
SIO_000300: 3.487e0

MQRankSum
type: SiteQuality
SIO_000300: -5.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.328e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.281e0

DP
type: SiteQuality
SIO_000300: 1.585963e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.11e-1

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2270
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1573
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1747
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3145
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5255
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.944768572539868e-4
allele num: 10284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.00468243486613e-5
allele num: 66632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.262e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

FS
type: SiteQuality
SIO_000300: 1.745e0

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

DP
type: SiteQuality
SIO_000300: 1.586763e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e-1

MQ
type: SiteQuality
SIO_000300: 5.918e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-2

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1573
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44962
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5249
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 7.874015748031496e-4
allele num: 16510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.946e1

VQSLOD
type: SiteQuality
SIO_000300: 9.27e-1

DP
type: SiteQuality
SIO_000300: 1.587391e6

FS
type: SiteQuality
SIO_000300: 1.134e0

MQRankSum
type: SiteQuality
SIO_000300: -3.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

QD
type: SiteQuality
SIO_000300: 1.266e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.02e-1

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 21

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 21

GenotypeQuality
all individuals: 53
bin: 2.25e1
variant carriers: 23

GenotypeQuality
all individuals: 16988
bin: 6.25e1
variant carriers: 44

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 22

GenotypeQuality
all individuals: 131
bin: 8.25e1
variant carriers: 72

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 12

GenotypeQuality
all individuals: 969
bin: 6.75e1
variant carriers: 45

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 93

GenotypeQuality
all individuals: 41620
bin: 9.75e1
variant carriers: 41175

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 24

GenotypeQuality
all individuals: 80
bin: 8.75e1
variant carriers: 51

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 30

GenotypeQuality
all individuals: 207
bin: 7.75e1
variant carriers: 61

African
type: Population
allele count: 6859
allele frequency: 6.651474010861133e-1
allele num: 10312
num of homozygotes: 2305

East Asian
type: Population
allele count: 3090
allele frequency: 3.578874218207088e-1
allele num: 8634
num of homozygotes: 553

Latino
type: Population
allele count: 8040
allele frequency: 6.976744186046512e-1
allele num: 11524
num of homozygotes: 2866

Other
type: Population
allele count: 414
allele frequency: 4.579646017699115e-1
allele num: 904
num of homozygotes: 98

South Asian
type: Population
allele count: 7827
allele frequency: 4.741912031988368e-1
allele num: 16506
num of homozygotes: 1865

European (Finnish)
type: Population
allele count: 2320
allele frequency: 3.509833585476551e-1
allele num: 6610
num of homozygotes: 398

European (Non-Finnish)
type: Population
allele count: 26597
allele frequency: 3.992584364116729e-1
allele num: 66616
num of homozygotes: 5308

QD
type: SiteQuality
SIO_000300: 1.73e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.703e0

FS
type: SiteQuality
SIO_000300: 5.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.99e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.08e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.23e-1

DP
type: SiteQuality
SIO_000300: 4.91444e6

VQSLOD
type: SiteQuality
SIO_000300: 5.06e0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6480
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.476245654692932e-4
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5004651441947e-5
allele num: 66646
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.625398e6

FS
type: SiteQuality
SIO_000300: 1.109e0

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 1.459e1

MQ
type: SiteQuality
SIO_000300: 5.986e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

GenotypeQuality
all individuals: 1485
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48456
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1415
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.514692517418964e-4
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.624345e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.889e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

FS
type: SiteQuality
SIO_000300: 4.288e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.192e0

VQSLOD
type: SiteQuality
SIO_000300: -1.299e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.11e-1

QD
type: SiteQuality
SIO_000300: 1.281e1

MQRankSum
type: SiteQuality
SIO_000300: 8.97e-1

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6456
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48413
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1484
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500915558490679e-5
allele num: 66626
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.63e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e-1

QD
type: SiteQuality
SIO_000300: 1.22e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.318e0

FS
type: SiteQuality
SIO_000300: 5.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
SIO_000300: 1.622699e6

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1400
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 222
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6277
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.751620248730075e-4
allele num: 11418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.61e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

DP
type: SiteQuality
SIO_000300: 1.60927e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 108
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6259
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1326
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47725
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511761504505049e-5
allele num: 66148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.808e-1

DP
type: SiteQuality
SIO_000300: 1.606238e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.67e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.742e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-1

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6115
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47353
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1059
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1412
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515610791148833e-5
allele num: 65980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.864e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

DP
type: SiteQuality
SIO_000300: 1.599251e6

VQSLOD
type: SiteQuality
SIO_000300: 9.0e-2

MQ
type: SiteQuality
SIO_000300: 5.924e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
all individuals: 6107
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1304
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1412
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47318
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516576177621402e-5
allele num: 65938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10036
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.95e0

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

DP
type: SiteQuality
SIO_000300: 1.596744e6

QD
type: SiteQuality
SIO_000300: 1.095e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.55e0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1390
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 185
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1580
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5937
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46521
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1374
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10002
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.547986517651233e-4
allele num: 11274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.52e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.91e-1

FS
type: SiteQuality
SIO_000300: 3.309e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.627e0

DP
type: SiteQuality
SIO_000300: 1.582999e6

QD
type: SiteQuality
SIO_000300: 1.27e1

GenotypeQuality
all individuals: 197
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5462
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44900
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1372
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558166349839509e-5
allele num: 64178
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

FS
type: SiteQuality
SIO_000300: 3.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.248e0

MQRankSum
type: SiteQuality
SIO_000300: -1.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.88e-1

QD
type: SiteQuality
SIO_000300: 1.32e1

DP
type: SiteQuality
SIO_000300: 1.542091e6

GenotypeQuality
all individuals: 270
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1373
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 499
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4147
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44111
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5182
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.260040951330918e-4
allele num: 63490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9820
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 1.522552e6

QD
type: SiteQuality
SIO_000300: 1.539e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.81e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.34e-1

GenotypeQuality
all individuals: 603
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5009
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1142
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42891
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10708
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.591292447726043e-5
allele num: 62842
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16190
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.050861361771944e-4
allele num: 9752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.81e0

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

DP
type: SiteQuality
SIO_000300: 1.504372e6

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 1.357e1

GenotypeQuality
all individuals: 1043
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1353
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41335
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 961
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7930
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.235191420376606e-5
allele num: 16038
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.627339300244101e-5
allele num: 61450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.71e-1

DP
type: SiteQuality
SIO_000300: 1.464596e6

QD
type: SiteQuality
SIO_000300: 1.638e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 2.2975e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.278e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

MQ
type: SiteQuality
SIO_000300: 5.931e1

GenotypeQuality
all individuals: 426
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11631
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36571
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3899
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 9.75e1
variant carriers: 24

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7552
num of homozygotes: 0

African
type: Population
allele count: 25
allele frequency: 2.709733362237156e-3
allele num: 9226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15666
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.57e0

QD
type: SiteQuality
SIO_000300: 1.325e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.37e-1

DP
type: SiteQuality
SIO_000300: 1.373652e6

GenotypeQuality
all individuals: 394
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12079
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 160
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3806
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36295
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7472
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.40861317610869e-5
allele num: 15604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9180
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.64e-1

MQ
type: SiteQuality
SIO_000300: 4.248e1

MQRankSum
type: SiteQuality
SIO_000300: -5.36e-1

FS
type: SiteQuality
SIO_000300: 1.395e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.599e0

VQSLOD
type: SiteQuality
SIO_000300: -2.079e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

DP
type: SiteQuality
SIO_000300: 1.36497e6

QD
type: SiteQuality
SIO_000300: 5.91e0

GenotypeQuality
all individuals: 563
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18006
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1051
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29665
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2992
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7016
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8748
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8342
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.004008016032064e-4
allele num: 14970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.251584e6

VQSLOD
type: SiteQuality
SIO_000300: 4.66e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.173e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.18e-1

QD
type: SiteQuality
SIO_000300: 1.344e1

GenotypeQuality
all individuals: 189
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1038
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2476
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5716
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.211240310077519e-4
allele num: 8256
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14346
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.28e0

FS
type: SiteQuality
SIO_000300: 3.358e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

MQ
type: SiteQuality
SIO_000300: 5.866e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.627e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

DP
type: SiteQuality
SIO_000300: 1.159618e6

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.102e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

GenotypeQuality
all individuals: 1210
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 242
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1775
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34758
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7912
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 2.41196333815726e-4
allele num: 4146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10058
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5954
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.62e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

FS
type: SiteQuality
SIO_000300: 7.16e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.093e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.849e-1

DP
type: SiteQuality
SIO_000300: 7.76431e5

GenotypeQuality
all individuals: 785
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30688
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3989
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1391
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2924
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.343671270958214e-5
allele num: 23022
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7424
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

QD
type: SiteQuality
SIO_000300: 3.06e0

MQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.16e0

VQSLOD
type: SiteQuality
SIO_000300: 2.96e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-2

DP
type: SiteQuality
SIO_000300: 6.27552e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.82e-1

GenotypeQuality
all individuals: 1414
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 76
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1281
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20447
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.122011541632317e-4
allele num: 2426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1762
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.73576e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.79e0

QD
type: SiteQuality
SIO_000300: 1.306e1

GenotypeQuality
all individuals: 464
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21416
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1315
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2309
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 151
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 128
bin: 9.25e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 3.691399040236249e-4
allele num: 16254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 2.147766323024055e-3
allele num: 2328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1884
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.898e0

QD
type: SiteQuality
SIO_000300: 1.119e1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.73e0

DP
type: SiteQuality
SIO_000300: 5.15931e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.45e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
all individuals: 75
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3568
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27977
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2928
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10469
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1278
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 130
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 970
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10588
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.537e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.712e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.537e0

VQSLOD
type: SiteQuality
SIO_000300: -8.839e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.67e-2

DP
type: SiteQuality
SIO_000300: 4.14239e5

QD
type: SiteQuality
SIO_000300: 8.529999999999999e0

GenotypeQuality
all individuals: 488
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5713
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7032
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 215
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.577287066246057e-3
allele num: 634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9012
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1002
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.13e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.91706e5

VQSLOD
type: SiteQuality
SIO_000300: 4.08e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.308e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.08e-1

GenotypeQuality
all individuals: 213
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25793
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6116
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4379
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 946
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2132
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.91e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -8.28e-1

DP
type: SiteQuality
SIO_000300: 3.8937e5

VQSLOD
type: SiteQuality
SIO_000300: -1.242e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.23e0

GenotypeQuality
all individuals: 106
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4379
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6116
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.616805170821791e-4
allele num: 2166
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.91e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.242e0

MQRankSum
type: SiteQuality
SIO_000300: -8.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e-1

DP
type: SiteQuality
SIO_000300: 3.8937e5

QD
type: SiteQuality
SIO_000300: 7.61e0

GenotypeQuality
all individuals: 5080
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5857
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6451
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1992
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 2.814258911819887e-3
allele num: 2132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.86519e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

FS
type: SiteQuality
SIO_000300: 8.733000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 3.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.31e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.476e1

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

GenotypeQuality
all individuals: 97
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2786
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 9.75e1
variant carriers: 5

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2408
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 7.509762691498949e-4
allele num: 6658
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.936e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.97e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.094e-1

DP
type: SiteQuality
SIO_000300: 1.22841e5

QD
type: SiteQuality
SIO_000300: 1.108e1

FS
type: SiteQuality
SIO_000300: 2.352e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.795e0

MQRankSum
type: SiteQuality
SIO_000300: -3.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.35e-1

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 4.357298474945534e-4
allele num: 4590
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1640
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.1904e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.18e-2

QD
type: SiteQuality
SIO_000300: 3.023e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.82e-1