12-32777416-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777416
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777415
    reference: chr 12
allele count: 1865
allele frequency: 3.884931050285381e-2
allele num: 48006
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*953+41delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1878+41delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*934+41delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*934+41delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1797+41delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*911+41delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000370413
  ensembl transcript: ENST00000381025
  gene symbol: FGD4
  hgvsc: ENST00000381025.3:c.798+41delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.798+41delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1953+41delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1542+41delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1263+41delT
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.25e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 2.75e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 17819
  bin: 1.25e1
  variant carriers: 517
genotype depth: GenotypeDepth
  all individuals: 15765
  bin: 7.5e0
  variant carriers: 211
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 4.75e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 8753
  bin: 1.75e1
  variant carriers: 291
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 2.25e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 5.75e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 3.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.25e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 4.25e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 3.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.75e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: CT
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

12-32777416-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777416
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777414
    reference: chr 12
allele count: 25
allele frequency: 5.207682373036703e-4
allele num: 48006
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*953+40_*953+41delTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1263+40_1263+41delTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.798+40_798+41delTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1542+40_1542+41delTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000370413
  ensembl transcript: ENST00000381025
  gene symbol: FGD4
  hgvsc: ENST00000381025.3:c.798+40_798+41delTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*934+40_*934+41delTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1953+40_1953+41delTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1797+40_1797+41delTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*911+40_*911+41delTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1878+40_1878+41delTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*934+40_*934+41delTT
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8753
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15765
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17819
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: CTT
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

12-32777417-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777417
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777418
    reference: chr 12
allele count: 1
allele frequency: 7.260055176419341e-5
allele num: 13774
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1878+31_1878+32insC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*934+31_*934+32insC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*934+31_*934+32insC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1263+31_1263+32insC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.798+31_798+32insC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*953+31_*953+32insC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*911+31_*911+32insC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1542+31_1542+32insC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000370413
  ensembl transcript: ENST00000381025
  gene symbol: FGD4
  hgvsc: ENST00000381025.3:c.798+31_798+32insC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1797+31_1797+32insC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1953+31_1953+32insC
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14844
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8911
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4352
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

12-32777420-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777420
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777420
    reference: chr 12
allele count: 1
allele frequency: 1.375818612074184e-5
allele num: 72684
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1263+34T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1953+34T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1542+34T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*911+34T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*953+34T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1797+34T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000370413
  ensembl transcript: ENST00000381025
  gene symbol: FGD4
  hgvsc: ENST00000381025.3:c.798+34T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*934+34T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*934+34T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1878+34T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.798+34T>C
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 16222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6694
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

12-32777427-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777427
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777427
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 57726
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*911+41T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1878+41T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*934+41T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000370413
  ensembl transcript: ENST00000381025
  gene symbol: FGD4
  hgvsc: ENST00000381025.3:c.798+41T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1263+41T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*953+41T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*934+41T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1797+41T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1542+41T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1953+41T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.798+41T>C
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 15631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7713
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21064
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

12-32777435-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777435
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777435
    reference: chr 12
allele count: 2
allele frequency: 3.840393256269442e-5
allele num: 52078
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1797+49A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*934+49A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1542+49A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1263+49A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1953+49A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*911+49A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000370413
  ensembl transcript: ENST00000381025
  gene symbol: FGD4
  hgvsc: ENST00000381025.3:c.798+49A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1878+49A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.798+49A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*953+49A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*934+49A>G
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12676
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8887
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum

12-32777549-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777549
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777549
    reference: chr 12
allele count: 1
allele frequency: 7.785736530675803e-5
allele num: 12844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000370413
  ensembl transcript: ENST00000381025
  gene symbol: FGD4
  hgvsc: ENST00000381025.3:c.799-44C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*953+163C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*935-44C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1953+163C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*934+163C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1542+163C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1878+163C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1797+163C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1263+163C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*911+163C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.798+163C>T
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25504
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

12-32777550-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777550
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777550
    reference: chr 12
allele count: 6
allele frequency: 4.650441791970237e-4
allele num: 12902
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*935-43G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000370413
  ensembl transcript: ENST00000381025
  gene symbol: FGD4
  hgvsc: ENST00000381025.3:c.799-43G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*911+164G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.798+164G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*934+164G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1953+164G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1878+164G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1542+164G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*953+164G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1263+164G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1797+164G>A
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

12-32777566-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777566
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777566
    reference: chr 12
allele count: 2
allele frequency: 1.75561797752809e-4
allele num: 11392
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1542+180G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1263+180G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*935-27G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*953+180G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.798+180G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*911+180G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000370413
  ensembl transcript: ENST00000381025
  gene symbol: FGD4
  hgvsc: ENST00000381025.3:c.799-27G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1878+180G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*934+180G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1797+180G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1953+180G>A
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18856
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

12-32777571-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777571
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777572
    reference: chr 12
allele count: 173
allele frequency: 3.084878744650499e-2
allele num: 5608
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000370413
  ensembl transcript: ENST00000381025
  gene symbol: FGD4
  hgvsc: ENST00000381025.3:c.799-12dupT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1263+195dupT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1878+195dupT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*953+195dupT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.798+195dupT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*935-12dupT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1953+195dupT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1542+195dupT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1797+195dupT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*934+195dupT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*911+195dupT
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17683
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 1.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 1.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 2.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 2.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-32777571-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777571
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777570
    reference: chr 12
allele count: 407
allele frequency: 7.257489300998574e-2
allele num: 5608
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.798+195delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1542+195delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000370413
  ensembl transcript: ENST00000381025
  gene symbol: FGD4
  hgvsc: ENST00000381025.3:c.799-12delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*935-12delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1953+195delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1878+195delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1797+195delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*934+195delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*953+195delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1263+195delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*911+195delT
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 2.25e1
  variant carriers: 145
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 2.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 1.75e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 1.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 17683
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
reference allele: AT
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

12-32777582-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777582
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777582
    reference: chr 12
allele count: 1
allele frequency: 9.869719699960521e-5
allele num: 10132
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1953+196G>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*953+196G>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1542+196G>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1263+196G>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1878+196G>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*934+196G>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1797+196G>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*935-11G>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*911+196G>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.798+196G>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000370413
  ensembl transcript: ENST00000381025
  gene symbol: FGD4
  hgvsc: ENST00000381025.3:c.799-11G>T
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15531
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

12-32777588-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777588
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777588
    reference: chr 12
allele count: 5
allele frequency: 4.983057604145904e-4
allele num: 10034
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*934+202C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1878+202C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*911+202C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*935-5C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*953+202C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.798+202C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1797+202C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1542+202C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000370413
  ensembl transcript: ENST00000381025
  gene symbol: FGD4
  hgvsc: ENST00000381025.3:c.799-5C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1953+202C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1263+202C>T
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14948
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.799-5C>T
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

12-32777595-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777595
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777595
    reference: chr 12
allele count: 9
allele frequency: 9.067096514205118e-4
allele num: 9926
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.798+209A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1263+209A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000370413
  ensembl transcript: ENST00000381025
  gene symbol: FGD4
  hgvsc: ENST00000381025.3:c.801A>G
  hgvsp: ENST00000381025.3:c.801A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1953+209A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1878+209A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*911+209A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*937A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1542+209A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1797+209A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*953+209A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*934+209A>G
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: splice region
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14656
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.801A>G
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/12-32777595-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777595
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777594
    reference: chr 12
allele count: 1
allele frequency: 1.007455168245013e-4
allele num: 9926
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1542+210delC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*934+210delC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*953+210delC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*911+210delC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1797+210delC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*938delC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.798+210delC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1878+210delC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000370413
  ensembl transcript: ENST00000381025
  gene symbol: FGD4
  hgvsc: ENST00000381025.3:c.802delC
  hgvsp: ENSP00000370413.3:p.Arg268GlufsTer9
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1953+210delC
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1263+210delC
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14656
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg268GlufsTer9
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: AC
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-32777597-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777597
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777597
    reference: chr 12
allele count: 1
allele frequency: 1.017293997965412e-4
allele num: 9830
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1263+211G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.798+211G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*939G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1797+211G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1542+211G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000370413
  ensembl transcript: ENST00000381025
  gene symbol: FGD4
  hgvsc: ENST00000381025.3:c.803G>A
  hgvsp: ENSP00000370413.3:p.Arg268Gln
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*911+211G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*953+211G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*934+211G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1953+211G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1878+211G>A
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14778
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg268Gln
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

12-32777645-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777645
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777645
    reference: chr 12
allele count: 1
allele frequency: 1.215953307392996e-4
allele num: 8224
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*934+259C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*987C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*953+259C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1878+259C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1797+259C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*911+259C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1263+259C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1542+259C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1953+259C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.798+259C>T
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16411
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3542
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

12-32777660-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777660
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777660
    reference: chr 12
allele count: 2
allele frequency: 2.75709953129308e-4
allele num: 7254
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1954-250G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1002G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*912-250G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*935-250G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.799-250G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1264-250G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1543-250G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1879-250G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1798-250G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*954-250G>A
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-32777665-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777665
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777665
    reference: chr 12
allele count: 1
allele frequency: 1.398601398601399e-4
allele num: 7150
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1879-245C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1007C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*954-245C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1543-245C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1798-245C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1264-245C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1954-245C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*935-245C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*912-245C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.799-245C>T
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20548
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-32777685-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777685
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777685
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 6756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*935-225G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1027G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*954-225G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.799-225G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1543-225G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1264-225G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1954-225G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*912-225G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1798-225G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1879-225G>A
  variant of: http://identifiers.org/hgnc/19125
canonical: false
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25558
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21656
  bin: 7.5e0
  variant carriers: 0
hgvs: c.*1027G>A
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

12-32777861-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777861
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777861
    reference: chr 12
allele count: 3
allele frequency: 2.477250582153887e-5
allele num: 121102
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1879-49T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1264-49T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1543-49T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*954-49T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1798-49T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.799-49T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1954-49T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*935-49T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*912-49T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1028-49T>C
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5877
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

12-32777866-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777866
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777866
    reference: chr 12
allele count: 1
allele frequency: 8.257092842751923e-6
allele num: 121108
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.799-44A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*935-44A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1264-44A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1879-44A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1028-44A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1954-44A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*912-44A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1798-44A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1543-44A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*954-44A>G
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4462
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5074
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4614
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

12-32777874-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777874
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777872
    reference: chr 12
allele count: 1
allele frequency: 8.254230293025175e-6
allele num: 121150
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*954-34_*954-33delTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1954-34_1954-33delTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1879-34_1879-33delTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*935-34_*935-33delTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1264-34_1264-33delTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.799-34_799-33delTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1798-34_1798-33delTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*912-34_*912-33delTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1028-34_*1028-33delTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1543-34_1543-33delTT
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2711
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: CTT
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

12-32777877-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777877
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777877
    reference: chr 12
allele count: 1
allele frequency: 8.253549026081216e-6
allele num: 121160
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1954-33T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.799-33T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*954-33T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*935-33T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*912-33T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1879-33T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1543-33T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1264-33T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1028-33T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1798-33T>G
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4462
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6176
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP

12-32777889-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777889
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777889
    reference: chr 12
allele count: 11575
allele frequency: 9.54828172174286e-2
allele num: 121226
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1798-21T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1543-21T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*912-21T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.799-21T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*935-21T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1879-21T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1264-21T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1954-21T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1028-21T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*954-21T>G
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 7.25e1
  variant carriers: 381
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 6.75e1
  variant carriers: 358
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 2.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 8.75e1
  variant carriers: 492
genotype depth: GenotypeDepth
  all individuals: 5517
  bin: 4.75e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 3.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 4738
  bin: 3.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 5420
  bin: 4.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 5002
  bin: 5.25e1
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10405
  bin: 9.75e1
  variant carriers: 7191
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 5.75e1
  variant carriers: 232
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 7.75e1
  variant carriers: 439
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 9.25e1
  variant carriers: 540
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 6.25e1
  variant carriers: 267
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 8.25e1
  variant carriers: 446
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 717
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

12-32777902-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777902
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777902
    reference: chr 12
allele count: 567
allele frequency: 4.676211526407812e-3
allele num: 121252
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1954-8T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1798-8T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1264-8T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1879-8T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*954-8T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1028-8T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*935-8T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1543-8T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*912-8T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.799-8T>C
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 9.75e1
  variant carriers: 386
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6110
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6562
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 5.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 5825
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3979
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5895
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 8.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 6.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 6556
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 9.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
hgvs: c.1543-8T>C
num of homozygotes: 11
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

12-32777904-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777904
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777904
    reference: chr 12
allele count: 1
allele frequency: 8.246742536698004e-6
allele num: 121260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1954-6C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.799-6C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1543-6C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1798-6C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*912-6C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*954-6C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1028-6C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1879-6C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1264-6C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*935-6C>T
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5856
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1543-6C>T
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

12-32777917-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777917
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777917
    reference: chr 12
allele count: 20
allele frequency: 1.648777431534517e-4
allele num: 121302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*961A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1961A>G
  hgvsp: ENSP00000449273.1:p.Gln654Arg
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1550A>G
  hgvsp: ENSP00000394487.2:p.Gln517Arg
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1886A>G
  hgvsp: ENSP00000433666.1:p.Gln629Arg
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*942A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.806A>G
  hgvsp: ENSP00000266482.3:p.Gln269Arg
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1271A>G
  hgvsp: ENSP00000446695.1:p.Gln424Arg
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1035A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*919A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1805A>G
  hgvsp: ENSP00000431323.1:p.Gln602Arg
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6593
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5856
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3774
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 6157
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln517Arg
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS

12-32777919-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777919
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777919
    reference: chr 12
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*944G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1037G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1273G>A
  hgvsp: ENSP00000446695.1:p.Glu425Lys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*963G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1888G>A
  hgvsp: ENSP00000433666.1:p.Glu630Lys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.808G>A
  hgvsp: ENSP00000266482.3:p.Glu270Lys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1552G>A
  hgvsp: ENSP00000394487.2:p.Glu518Lys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*921G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1963G>A
  hgvsp: ENSP00000449273.1:p.Glu655Lys
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1807G>A
  hgvsp: ENSP00000431323.1:p.Glu603Lys
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4955
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5970
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu518Lys
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

12-32777925-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777925
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777925
    reference: chr 12
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1279A>G
  hgvsp: ENSP00000446695.1:p.Ile427Val
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1043A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.814A>G
  hgvsp: ENSP00000266482.3:p.Ile272Val
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1558A>G
  hgvsp: ENSP00000394487.2:p.Ile520Val
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1813A>G
  hgvsp: ENSP00000431323.1:p.Ile605Val
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1969A>G
  hgvsp: ENSP00000449273.1:p.Ile657Val
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*927A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1894A>G
  hgvsp: ENSP00000433666.1:p.Ile632Val
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*969A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*950A>G
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5969
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6596
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6594
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile520Val
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

12-32777927-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777927
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777927
    reference: chr 12
allele count: 771
allele frequency: 6.355198733905933e-3
allele num: 121318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*929C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1281C>T
  hgvsp: ENST00000546442.1:c.1281C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1971C>T
  hgvsp: ENST00000534526.2:c.1971C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*971C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1815C>T
  hgvsp: ENST00000531134.1:c.1815C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1896C>T
  hgvsp: ENST00000525053.1:c.1896C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.816C>T
  hgvsp: ENST00000266482.3:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1560C>T
  hgvsp: ENST00000427716.2:c.1560C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1045C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*952C>T
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6091
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4888
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 9.75e1
  variant carriers: 658
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 8.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 8.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 7.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5796
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3055
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile520Ile
num of homozygotes: 5
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

12-32777927-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777927
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777927
    reference: chr 12
allele count: 1
allele frequency: 8.24279991427488e-6
allele num: 121318
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*971C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1896C>G
  hgvsp: ENSP00000433666.1:p.Ile632Met
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1281C>G
  hgvsp: ENSP00000446695.1:p.Ile427Met
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1971C>G
  hgvsp: ENSP00000449273.1:p.Ile657Met
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1560C>G
  hgvsp: ENSP00000394487.2:p.Ile520Met
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.816C>G
  hgvsp: ENSP00000266482.3:p.Ile272Met
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1815C>G
  hgvsp: ENSP00000431323.1:p.Ile605Met
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*929C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1045C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*952C>G
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4888
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5796
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6038
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile520Met
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

12-32777928-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777928
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777928
    reference: chr 12
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*930G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1897G>A
  hgvsp: ENSP00000433666.1:p.Asp633Asn
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1282G>A
  hgvsp: ENSP00000446695.1:p.Asp428Asn
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*953G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1816G>A
  hgvsp: ENSP00000431323.1:p.Asp606Asn
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.817G>A
  hgvsp: ENSP00000266482.3:p.Asp273Asn
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1972G>A
  hgvsp: ENSP00000449273.1:p.Asp658Asn
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1046G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*972G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1561G>A
  hgvsp: ENSP00000394487.2:p.Asp521Asn
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5858
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4931
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6615
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6611
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6160
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp521Asn
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

12-32777928-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777928
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777928
    reference: chr 12
allele count: 2
allele frequency: 1.648478454386601e-5
allele num: 121324
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1561G>C
  hgvsp: ENSP00000394487.2:p.Asp521His
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*972G>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*930G>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.817G>C
  hgvsp: ENSP00000266482.3:p.Asp273His
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1046G>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1897G>C
  hgvsp: ENSP00000433666.1:p.Asp633His
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1972G>C
  hgvsp: ENSP00000449273.1:p.Asp658His
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1282G>C
  hgvsp: ENSP00000446695.1:p.Asp428His
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1816G>C
  hgvsp: ENSP00000431323.1:p.Asp606His
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*953G>C
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4931
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6615
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5858
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6611
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1624
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp521His
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

12-32777929-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777929
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777929
    reference: chr 12
allele count: 9
allele frequency: 7.417908479493604e-5
allele num: 121328
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1047A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1562A>G
  hgvsp: ENSP00000394487.2:p.Asp521Gly
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*954A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1898A>G
  hgvsp: ENSP00000433666.1:p.Asp633Gly
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*973A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1973A>G
  hgvsp: ENSP00000449273.1:p.Asp658Gly
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1817A>G
  hgvsp: ENSP00000431323.1:p.Asp606Gly
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*931A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1283A>G
  hgvsp: ENSP00000446695.1:p.Asp428Gly
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.818A>G
  hgvsp: ENSP00000266482.3:p.Asp273Gly
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3684
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6616
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6610
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4930
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp521Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

12-32777931-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777931
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777931
    reference: chr 12
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.820G>A
  hgvsp: ENSP00000266482.3:p.Ala274Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*933G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1900G>A
  hgvsp: ENSP00000433666.1:p.Ala634Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.1975G>A
  hgvsp: ENSP00000449273.1:p.Ala659Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1564G>A
  hgvsp: ENSP00000394487.2:p.Ala522Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*975G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1285G>A
  hgvsp: ENSP00000446695.1:p.Ala429Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1819G>A
  hgvsp: ENSP00000431323.1:p.Ala607Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1049G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*956G>A
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4933
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5858
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6612
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3173
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala522Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

12-32777986-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777986
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777986
    reference: chr 12
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2030T>C
  hgvsp: ENSP00000449273.1:p.Ile677Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1340T>C
  hgvsp: ENSP00000446695.1:p.Ile447Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1011T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1619T>C
  hgvsp: ENSP00000394487.2:p.Ile540Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1030T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.875T>C
  hgvsp: ENSP00000266482.3:p.Ile292Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*988T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1955T>C
  hgvsp: ENSP00000433666.1:p.Ile652Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1874T>C
  hgvsp: ENSP00000431323.1:p.Ile625Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1104T>C
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6612
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5859
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4933
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile540Thr
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

12-32777990-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777990
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777990
    reference: chr 12
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1623C>G
  hgvsp: ENSP00000394487.2:p.His541Gln
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1034C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.879C>G
  hgvsp: ENSP00000266482.3:p.His293Gln
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1108C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1344C>G
  hgvsp: ENSP00000446695.1:p.His448Gln
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2034C>G
  hgvsp: ENSP00000449273.1:p.His678Gln
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1959C>G
  hgvsp: ENSP00000433666.1:p.His653Gln
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1015C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1878C>G
  hgvsp: ENSP00000431323.1:p.His626Gln
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*992C>G
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4933
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5859
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6612
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38888
  bin: 9.75e1
  variant carriers: 1
hgvs: p.His541Gln
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

12-32777997-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32777997
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32777997
    reference: chr 12
allele count: 2
allele frequency: 1.648261084555794e-5
allele num: 121340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2041G>A
  hgvsp: ENSP00000449273.1:p.Val681Ile
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1630G>A
  hgvsp: ENSP00000394487.2:p.Val544Ile
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1351G>A
  hgvsp: ENSP00000446695.1:p.Val451Ile
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1885G>A
  hgvsp: ENSP00000431323.1:p.Val629Ile
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*999G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.886G>A
  hgvsp: ENSP00000266482.3:p.Val296Ile
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1041G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1966G>A
  hgvsp: ENSP00000433666.1:p.Val656Ile
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1022G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1115G>A
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5858
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4933
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val544Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

12-32778003-G-GTGAGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778003
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778008
    reference: chr 12
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: GTGAGT
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1890+5_1890+9dupGTTGA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1635+5_1635+9dupGTTGA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1027+5_*1027+9dupGTTGA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1971+5_1971+9dupGTTGA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1356+5_1356+9dupGTTGA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.891+5_891+9dupGTTGA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1046+5_*1046+9dupGTTGA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2046+5_2046+9dupGTTGA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1120+5_*1120+9dupGTTGA
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1004+5_*1004+9dupGTTGA
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: splice donor
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 6613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4933
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5858
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1635+5_1635+9dupGTTGA
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

12-32778019-TCTTAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778019
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778014
    reference: chr 12
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1971+21_1971+25delAACTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1027+21_*1027+25delAACTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1356+21_1356+25delAACTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1046+21_*1046+25delAACTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2046+21_2046+25delAACTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1890+21_1890+25delAACTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.891+21_891+25delAACTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1004+21_*1004+25delAACTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1635+21_1635+25delAACTT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1120+21_*1120+25delAACTT
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4933
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5858
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6615
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5969
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6612
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: TCTTAA
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/12-32778028-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778028
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778028
    reference: chr 12
allele count: 1
allele frequency: 8.246742536698004e-6
allele num: 121260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1971+26C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1004+26C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1890+26C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1635+26C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2046+26C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1356+26C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1120+26C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.891+26C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1027+26C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1046+26C>A
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6612
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4934
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5858
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

12-32778030-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778030
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778030
    reference: chr 12
allele count: 6
allele frequency: 4.947963912849862e-5
allele num: 121262
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1120+28A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1004+28A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1890+28A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1971+28A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1635+28A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2046+28A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1027+28A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1356+28A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.891+28A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1046+28A>G
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6613
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5857
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4935
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2855
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3090
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

12-32778033-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778033
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778033
    reference: chr 12
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1004+31T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.891+31T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1890+31T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1046+31T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1027+31T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1356+31T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1635+31T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1971+31T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1120+31T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2046+31T>C
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6604
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4934
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6034
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-32778033-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778033
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778033
    reference: chr 12
allele count: 122
allele frequency: 1.006534222163554e-3
allele num: 121208
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1046+31T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1356+31T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2046+31T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.891+31T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1890+31T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1004+31T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1027+31T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1971+31T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1635+31T>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1120+31T>G
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6579
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6604
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6034
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4934
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5854
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 6.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3155
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

12-32778038-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778038
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778038
    reference: chr 12
allele count: 2
allele frequency: 1.650573574317075e-5
allele num: 121170
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1046+36C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1004+36C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.891+36C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1971+36C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1027+36C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2046+36C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1356+36C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1635+36C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1120+36C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1890+36C>T
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6606
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4932
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum

12-32778039-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778039
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778039
    reference: chr 12
allele count: 39886
allele frequency: 3.295927811198519e-1
allele num: 121016
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1356+37A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1120+37A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2046+37A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.891+37A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1635+37A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1046+37A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1027+37A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1890+37A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1004+37A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1971+37A>G
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 1.75e1
  variant carriers: 309
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 8.25e1
  variant carriers: 1236
genotype depth: GenotypeDepth
  all individuals: 6338
  bin: 4.75e1
  variant carriers: 3173
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 4094
  bin: 6.25e1
  variant carriers: 2817
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 9.25e1
  variant carriers: 749
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 8.75e1
  variant carriers: 988
genotype depth: GenotypeDepth
  all individuals: 5358
  bin: 3.25e1
  variant carriers: 1721
genotype depth: GenotypeDepth
  all individuals: 5681
  bin: 3.75e1
  variant carriers: 2134
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.25e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 2.25e1
  variant carriers: 621
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 6.75e1
  variant carriers: 2423
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 2.75e1
  variant carriers: 1093
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 4.25e1
  variant carriers: 2773
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 7.25e1
  variant carriers: 1987
genotype depth: GenotypeDepth
  all individuals: 5697
  bin: 5.25e1
  variant carriers: 3295
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 7.75e1
  variant carriers: 1669
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 9.75e1
  variant carriers: 2868
genotype depth: GenotypeDepth
  all individuals: 4901
  bin: 5.75e1
  variant carriers: 3127
genotype quality: GenotypeQuality
  all individuals: 1734
  bin: 7.75e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 3286
  bin: 6.25e1
  variant carriers: 63
num of homozygotes: 6809
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

12-32778048-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778048
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778048
    reference: chr 12
allele count: 2
allele frequency: 1.65371258475277e-5
allele num: 120940
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1890+46C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2046+46C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1046+46C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1635+46C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1027+46C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1971+46C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1004+46C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1356+46C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.891+46C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1120+46C>G
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7649
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3765
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31656
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

12-32778050-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778050
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778050
    reference: chr 12
allele count: 345
allele frequency: 2.853881278538813e-3
allele num: 120888
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1120+48G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.891+48G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1004+48G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1635+48G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1356+48G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2046+48G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1890+48G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1027+48G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1971+48G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1046+48G>A
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7073
  bin: 3.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 2.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 6689
  bin: 4.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 6.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 9.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 5.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 7543
  bin: 3.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 7638
  bin: 4.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5096
  bin: 2.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5211
  bin: 5.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4917
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 3
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

12-32778051-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778051
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778051
    reference: chr 12
allele count: 2
allele frequency: 1.654451301225948e-5
allele num: 120886
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1027+49G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.891+49G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1120+49G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1635+49G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1004+49G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2046+49G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1971+49G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1890+49G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1356+49G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1046+49G>A
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5209
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5093
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7635
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6692
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31639
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

12-32778053-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778053
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778053
    reference: chr 12
allele count: 12
allele frequency: 9.936571551595648e-5
allele num: 120766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1356+51G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1890+51G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1120+51G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2046+51G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.891+51G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1004+51G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1027+51G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1635+51G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1971+51G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1046+51G>A
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5096
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6820
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7634
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6691
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7494
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP

12-32778540-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778540
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778540
    reference: chr 12
allele count: 5
allele frequency: 5.472974452155257e-5
allele num: 91358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2047-48G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1047-48G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.892-48G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1972-48G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1636-48G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1891-48G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1357-48G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1121-48G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1005-48G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1028-48G>A
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10702
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13075
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2405
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3082
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/12-32778542-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778542
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778542
    reference: chr 12
allele count: 4
allele frequency: 4.363953742090334e-5
allele num: 91660
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2047-46A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1121-46A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.892-46A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1636-46A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1047-46A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1005-46A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1891-46A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1357-46A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1972-46A>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1028-46A>C
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9133
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13043
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5377
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

12-32778543-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778543
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778543
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 91898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1972-45T>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1047-45T>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1028-45T>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1357-45T>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1005-45T>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1636-45T>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1891-45T>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2047-45T>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.892-45T>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1121-45T>A
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10415
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12967
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2706
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5628
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

12-32778547-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778547
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778547
    reference: chr 12
allele count: 21
allele frequency: 2.276077343275817e-4
allele num: 92264
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1028-41A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1005-41A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1891-41A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2047-41A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1357-41A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1047-41A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1972-41A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1121-41A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1636-41A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.892-41A>G
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16005
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4805
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4043
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11770
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2385
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

12-32778548-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778548
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778547
    reference: chr 12
allele count: 1
allele frequency: 1.086932892763201e-5
allele num: 92002
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1357-33delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1005-33delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1028-33delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1047-33delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1121-33delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1972-33delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.892-33delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2047-33delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1891-33delT
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1636-33delT
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17007
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4907
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
reference allele: GT
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

http://identifiers.org/exac.variant/12-32778556-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778556
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778556
    reference: chr 12
allele count: 1
allele frequency: 1.037344398340249e-5
allele num: 96400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1005-32C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1357-32C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1121-32C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.892-32C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1028-32C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2047-32C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1891-32C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1972-32C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1636-32C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1047-32C>A
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26612
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

12-32778575-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778575
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778575
    reference: chr 12
allele count: 1
allele frequency: 8.509769215058888e-6
allele num: 117512
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1357-13C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1636-13C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1972-13C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1028-13C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.892-13C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1047-13C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1005-13C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2047-13C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1891-13C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1121-13C>T
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-32778581-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778581
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778581
    reference: chr 12
allele count: 15796
allele frequency: 1.317672967516976e-1
allele num: 119878
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1636-7T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.892-7T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1028-7T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1047-7T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1357-7T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1972-7T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1121-7T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1005-7T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2047-7T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1891-7T>C
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.75e1
  variant carriers: 197
genotype depth: GenotypeDepth
  all individuals: 31166
  bin: 2.25e1
  variant carriers: 408
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 9.25e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 3.25e1
  variant carriers: 1055
genotype depth: GenotypeDepth
  all individuals: 5935
  bin: 2.75e1
  variant carriers: 735
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 8.25e1
  variant carriers: 247
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 9.75e1
  variant carriers: 1807
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 4.75e1
  variant carriers: 1664
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 7.25e1
  variant carriers: 447
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 3.75e1
  variant carriers: 1376
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 5.75e1
  variant carriers: 1231
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 4.25e1
  variant carriers: 1522
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.75e1
  variant carriers: 308
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 6.75e1
  variant carriers: 671
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 6.25e1
  variant carriers: 951
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 5.25e1
  variant carriers: 1563
genotype quality: GenotypeQuality
hgvs: c.1636-7T>C
num of homozygotes: 1264
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-32778611-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778611
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778611
    reference: chr 12
allele count: 2
allele frequency: 1.648396933981703e-5
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1028C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1995C>A
  hgvsp: ENST00000525053.1:c.1995C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.915C>A
  hgvsp: ENST00000266482.3:c.915C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2070C>A
  hgvsp: ENST00000534526.2:c.2070C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1914C>A
  hgvsp: ENST00000531134.1:c.1914C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1070C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1144C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1659C>A
  hgvsp: ENST00000427716.2:c.1659C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1380C>A
  hgvsp: ENST00000546442.1:c.1380C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1051C>A
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala553Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

12-32778611-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778611
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778611
    reference: chr 12
allele count: 134
allele frequency: 1.104425945767741e-3
allele num: 121330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1070C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2070C>G
  hgvsp: ENST00000534526.2:c.2070C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1914C>G
  hgvsp: ENST00000531134.1:c.1914C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1051C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1144C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1380C>G
  hgvsp: ENST00000546442.1:c.1380C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.915C>G
  hgvsp: ENST00000266482.3:c.915C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1028C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1659C>G
  hgvsp: ENST00000427716.2:c.1659C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.1995C>G
  hgvsp: ENST00000525053.1:c.1995C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 31360
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 6160
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala553Ala
num of homozygotes: 1
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

12-32778620-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778620
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778620
    reference: chr 12
allele count: 2
allele frequency: 1.64774506088418e-5
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1668G>A
  hgvsp: ENSP00000394487.2:p.Trp556Ter
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1389G>A
  hgvsp: ENSP00000446695.1:p.Trp463Ter
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1037G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.924G>A
  hgvsp: ENSP00000266482.3:p.Trp308Ter
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2079G>A
  hgvsp: ENSP00000449273.1:p.Trp693Ter
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1923G>A
  hgvsp: ENSP00000431323.1:p.Trp641Ter
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1153G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1079G>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.2004G>A
  hgvsp: ENSP00000433666.1:p.Trp668Ter
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1060G>A
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2348
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Trp556Ter
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD

12-32778632-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778632
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778632
    reference: chr 12
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.2016T>C
  hgvsp: ENST00000525053.1:c.2016T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.936T>C
  hgvsp: ENST00000266482.3:c.936T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1165T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1072T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1049T>C
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1401T>C
  hgvsp: ENST00000546442.1:c.1401T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2091T>C
  hgvsp: ENST00000534526.2:c.2091T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1935T>C
  hgvsp: ENST00000531134.1:c.1935T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1680T>C
  hgvsp: ENST00000427716.2:c.1680T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1091T>C
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5304
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asn560Asn
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/12-32778663-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778663
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778663
    reference: chr 12
allele count: 484
allele frequency: 3.986754748686183e-3
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1196C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.2047C>A
  hgvsp: ENSP00000433666.1:p.Pro683Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1122C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1966C>A
  hgvsp: ENSP00000431323.1:p.Pro656Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1103C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1432C>A
  hgvsp: ENSP00000446695.1:p.Pro478Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.967C>A
  hgvsp: ENSP00000266482.3:p.Pro323Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1080C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1711C>A
  hgvsp: ENSP00000394487.2:p.Pro571Thr
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2122C>A
  hgvsp: ENSP00000449273.1:p.Pro708Thr
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6157
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 30991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 9.75e1
  variant carriers: 385
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 7.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro571Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-32778663-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778663
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778663
    reference: chr 12
allele count: 14
allele frequency: 1.153193522347243e-4
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1711C>G
  hgvsp: ENSP00000394487.2:p.Pro571Ala
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.2047C>G
  hgvsp: ENSP00000433666.1:p.Pro683Ala
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1122C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1432C>G
  hgvsp: ENSP00000446695.1:p.Pro478Ala
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1196C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1103C>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.967C>G
  hgvsp: ENSP00000266482.3:p.Pro323Ala
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2122C>G
  hgvsp: ENSP00000449273.1:p.Pro708Ala
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1966C>G
  hgvsp: ENSP00000431323.1:p.Pro656Ala
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1080C>G
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro571Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS

12-32778663-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778663
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778663
    reference: chr 12
allele count: 14
allele frequency: 1.153193522347243e-4
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1966C>T
  hgvsp: ENSP00000431323.1:p.Pro656Ser
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2122C>T
  hgvsp: ENSP00000449273.1:p.Pro708Ser
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1196C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1711C>T
  hgvsp: ENSP00000394487.2:p.Pro571Ser
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.967C>T
  hgvsp: ENSP00000266482.3:p.Pro323Ser
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1432C>T
  hgvsp: ENSP00000446695.1:p.Pro478Ser
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.2047C>T
  hgvsp: ENSP00000433666.1:p.Pro683Ser
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1122C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1103C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1080C>T
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro571Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/12-32778664-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778664
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778664
    reference: chr 12
allele count: 10
allele frequency: 8.237096588194593e-5
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1967C>A
  hgvsp: ENSP00000431323.1:p.Pro656His
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1104C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.968C>A
  hgvsp: ENSP00000266482.3:p.Pro323His
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1123C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2123C>A
  hgvsp: ENSP00000449273.1:p.Pro708His
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1712C>A
  hgvsp: ENSP00000394487.2:p.Pro571His
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1197C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.2048C>A
  hgvsp: ENSP00000433666.1:p.Pro683His
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1081C>A
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1433C>A
  hgvsp: ENSP00000446695.1:p.Pro478His
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro571His
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

12-32778664-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778664
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778664
    reference: chr 12
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1712C>T
  hgvsp: ENSP00000394487.2:p.Pro571Leu
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1197C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.2048C>T
  hgvsp: ENSP00000433666.1:p.Pro683Leu
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1433C>T
  hgvsp: ENSP00000446695.1:p.Pro478Leu
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.968C>T
  hgvsp: ENSP00000266482.3:p.Pro323Leu
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1123C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1967C>T
  hgvsp: ENSP00000431323.1:p.Pro656Leu
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1104C>T
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2123C>T
  hgvsp: ENSP00000449273.1:p.Pro708Leu
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1081C>T
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro571Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS

12-32778674-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32778674
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 32778674
    reference: chr 12
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000379089
  ensembl transcript: ENST00000395740
  gene symbol: FGD4
  hgvsc: ENST00000395740.1:c.*1114A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449273
  ensembl transcript: ENST00000534526
  gene symbol: FGD4
  hgvsc: ENST00000534526.2:c.2133A>G
  hgvsp: ENST00000534526.2:c.2133A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000449614
  ensembl transcript: ENST00000551984
  gene symbol: FGD4
  hgvsc: ENST00000551984.1:c.*1091A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000431323
  ensembl transcript: ENST00000531134
  gene symbol: FGD4
  hgvsc: ENST00000531134.1:c.1977A>G
  hgvsp: ENST00000531134.1:c.1977A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000266482
  ensembl transcript: ENST00000266482
  gene symbol: FGD4
  hgvsc: ENST00000266482.3:c.978A>G
  hgvsp: ENST00000266482.3:c.978A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000433666
  ensembl transcript: ENST00000525053
  gene symbol: FGD4
  hgvsc: ENST00000525053.1:c.2058A>G
  hgvsp: ENST00000525053.1:c.2058A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000394487
  ensembl transcript: ENST00000427716
  gene symbol: FGD4
  hgvsc: ENST00000427716.2:c.1722A>G
  hgvsp: ENST00000427716.2:c.1722A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000437109
  ensembl transcript: ENST00000493087
  gene symbol: FGD4
  hgvsc: ENST00000493087.1:c.*1133A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000434062
  ensembl transcript: ENST00000494977
  gene symbol: FGD4
  hgvsc: ENST00000494977.1:c.*1207A>G
  variant of: http://identifiers.org/hgnc/19125
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000139132
  ensembl protein: ENSP00000446695
  ensembl transcript: ENST00000546442
  gene symbol: FGD4
  hgvsc: ENST00000546442.1:c.1443A>G
  hgvsp: ENST00000546442.1:c.1443A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19125
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ala574Ala
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 850
bin: 6.75e1
variant carriers: 82

GenotypeQuality
all individuals: 2235
bin: 1.75e1
variant carriers: 105

GenotypeQuality
all individuals: 1183
bin: 5.25e1
variant carriers: 153

GenotypeQuality
all individuals: 2770
bin: 1.25e1
variant carriers: 91

GenotypeQuality
all individuals: 1892
bin: 2.75e1
variant carriers: 122

GenotypeQuality
all individuals: 1195
bin: 4.25e1
variant carriers: 169

GenotypeQuality
all individuals: 4371
bin: 7.5e0
variant carriers: 93

GenotypeQuality
all individuals: 1021
bin: 8.25e1
variant carriers: 54

GenotypeQuality
all individuals: 1057
bin: 4.75e1
variant carriers: 180

GenotypeQuality
all individuals: 1585
bin: 3.25e1
variant carriers: 115

GenotypeQuality
all individuals: 1872
bin: 6.25e1
variant carriers: 118

GenotypeQuality
all individuals: 18582
bin: 2.5e0
variant carriers: 81

GenotypeQuality
all individuals: 6169
bin: 2.25e1
variant carriers: 106

GenotypeQuality
all individuals: 736
bin: 8.75e1
variant carriers: 44

GenotypeQuality
all individuals: 1540
bin: 5.75e1
variant carriers: 155

GenotypeQuality
all individuals: 1476
bin: 3.75e1
variant carriers: 127

GenotypeQuality
all individuals: 914
bin: 7.75e1
variant carriers: 62

GenotypeQuality
all individuals: 9007
bin: 9.75e1
variant carriers: 476

GenotypeQuality
all individuals: 526
bin: 9.25e1
variant carriers: 34

GenotypeQuality
all individuals: 836
bin: 7.25e1
variant carriers: 66

European (Non-Finnish)
type: Population
allele count: 921
allele frequency: 3.854524148321754e-2
allele num: 23894
num of homozygotes: 0

African
type: Population
allele count: 144
allele frequency: 2.81140179617337e-2
allele num: 5122
num of homozygotes: 0

East Asian
type: Population
allele count: 154
allele frequency: 4.974160206718346e-2
allele num: 3096
num of homozygotes: 0

South Asian
type: Population
allele count: 446
allele frequency: 4.947858886177058e-2
allele num: 9014
num of homozygotes: 0

Other
type: Population
allele count: 20
allele frequency: 4.504504504504504e-2
allele num: 444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 32
allele frequency: 1.123595505617977e-2
allele num: 2848
num of homozygotes: 0

Latino
type: Population
allele count: 148
allele frequency: 4.124860646599777e-2
allele num: 3588
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.693e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
SIO_000300: 1.128054e6

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.04e-1

QD
type: SiteQuality
SIO_000300: 7.59e0

GenotypeQuality
all individuals: 836
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4371
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 736
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1183
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2770
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 9007
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1892
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2235
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1057
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6169
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1585
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1872
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1021
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1540
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18582
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 914
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1476
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1195
bin: 4.25e1
variant carriers: 4

Latino
type: Population
allele count: 4
allele frequency: 1.114827201783724e-3
allele num: 3588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 5.022181300744957e-4
allele num: 23894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 6.656312402928778e-4
allele num: 9014
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.952362358453729e-4
allele num: 5122
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 6.459948320413437e-4
allele num: 3096
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.693e-1

DP
type: SiteQuality
SIO_000300: 1.128054e6

VQSLOD
type: SiteQuality
SIO_000300: 2.64e0

QD
type: SiteQuality
SIO_000300: 7.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.92e-1

GenotypeQuality
all individuals: 742
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33447
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 75
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3633
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1480
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4844
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 9.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 7.204610951008645e-4
allele num: 1388
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e0

MQ
type: SiteQuality
SIO_000300: 6.071e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.416e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.087e-1

DP
type: SiteQuality
SIO_000300: 1.017617e6

VQSLOD
type: SiteQuality
SIO_000300: -1.118e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.012e0

QD
type: SiteQuality
SIO_000300: 2.586e1

GenotypeQuality
all individuals: 2800
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24228
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8554
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3988
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3205
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4031
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1413
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3206
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3678
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7088
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11926
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.93050193050193e-4
allele num: 5180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4252
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.642e0

DP
type: SiteQuality
SIO_000300: 1.007104e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.77e0

MQRankSum
type: SiteQuality
SIO_000300: 6.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e0

MQ
type: SiteQuality
SIO_000300: 5.739e1

FS
type: SiteQuality
SIO_000300: 2.187e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

QD
type: SiteQuality
SIO_000300: 8.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3721
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2229
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5320
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1732
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1692
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3587
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16843
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9810
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5935
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4021
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6050
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10632
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.913e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
SIO_000300: 9.140000000000001e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.134e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.39e-2

DP
type: SiteQuality
SIO_000300: 9.40654e5

GenotypeQuality
all individuals: 1368
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10149
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14889
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3655
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3548
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7874
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 742
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3752
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6108
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1703
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3048
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3886
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 5.753739930955121e-4
allele num: 3476
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.17e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.78044e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.44e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 23270
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3140
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4040
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 636
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 210
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 204
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.643115346697338e-4
allele num: 6086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1102
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.415e0

QD
type: SiteQuality
SIO_000300: 1.132e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e0

VQSLOD
type: SiteQuality
SIO_000300: -1.285e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 2.02016e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.05e-2

GenotypeQuality
all individuals: 21
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 14
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2939
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23506
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4151
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.808318264014466e-3
allele num: 1106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.152584085315833e-4
allele num: 4876
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.631321370309951e-4
allele num: 6130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 2.307e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
type: SiteQuality
SIO_000300: 2.01781e5

QD
type: SiteQuality
SIO_000300: 1.264e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.019999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.875e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 515
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3208
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 192
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3014
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16334
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.22061191626409e-4
allele num: 6210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3814
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.65707e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.59e-1

QD
type: SiteQuality
SIO_000300: 1.179e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.389999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.752e0

FS
type: SiteQuality
SIO_000300: 2.886e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.517e0

GenotypeQuality
all individuals: 1929
bin: 2.25e1
variant carriers: 24

GenotypeQuality
all individuals: 6341
bin: 2.5e0
variant carriers: 9

GenotypeQuality
all individuals: 565
bin: 1.25e1
variant carriers: 9

GenotypeQuality
all individuals: 128
bin: 4.25e1
variant carriers: 18

GenotypeQuality
all individuals: 414
bin: 1.75e1
variant carriers: 20

GenotypeQuality
all individuals: 434
bin: 2.75e1
variant carriers: 25

GenotypeQuality
all individuals: 383
bin: 3.25e1
variant carriers: 15

GenotypeQuality
all individuals: 304
bin: 6.25e1
variant carriers: 9

GenotypeQuality
all individuals: 121
bin: 4.75e1
variant carriers: 21

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 15

GenotypeQuality
all individuals: 15070
bin: 7.5e0
variant carriers: 9

GenotypeQuality
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 50
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 271
bin: 3.75e1
variant carriers: 21

GenotypeQuality
all individuals: 33
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 10

GenotypeQuality
all individuals: 18
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 23
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 9
bin: 8.25e1
variant carriers: 3

South Asian
type: Population
allele count: 99
allele frequency: 3.488372093023256e-2
allele num: 2838
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 2.956989247311828e-2
allele num: 372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.807692307692308e-2
allele num: 104
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 50
allele frequency: 2.46791707798618e-2
allele num: 2026
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.470588235294118e-2
allele num: 68
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 3.645833333333334e-2
allele num: 192
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.13e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.11e0

MQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

DP
type: SiteQuality
SIO_000300: 1.72226e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

GenotypeQuality
all individuals: 434
bin: 2.75e1
variant carriers: 43

GenotypeQuality
all individuals: 6
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 9
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1929
bin: 2.25e1
variant carriers: 47

GenotypeQuality
all individuals: 121
bin: 4.75e1
variant carriers: 45

GenotypeQuality
all individuals: 50
bin: 6.75e1
variant carriers: 19

GenotypeQuality
all individuals: 3
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 383
bin: 3.25e1
variant carriers: 46

GenotypeQuality
all individuals: 414
bin: 1.75e1
variant carriers: 29

GenotypeQuality
all individuals: 6341
bin: 2.5e0
variant carriers: 11

GenotypeQuality
all individuals: 15070
bin: 7.5e0
variant carriers: 16

GenotypeQuality
all individuals: 128
bin: 4.25e1
variant carriers: 35

GenotypeQuality
all individuals: 565
bin: 1.25e1
variant carriers: 16

GenotypeQuality
all individuals: 33
bin: 7.75e1
variant carriers: 16

GenotypeQuality
all individuals: 304
bin: 6.25e1
variant carriers: 26

GenotypeQuality
all individuals: 23
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 271
bin: 3.75e1
variant carriers: 54

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 30

GenotypeQuality
all individuals: 18
bin: 7.25e1
variant carriers: 13

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 26

European (Non-Finnish)
type: Population
allele count: 137
allele frequency: 6.762092793682133e-2
allele num: 2026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 4.6875e-2
allele num: 192
num of homozygotes: 0

Other
type: Population
allele count: 8
allele frequency: 1.176470588235294e-1
allele num: 68
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.73076923076923e-2
allele num: 104
num of homozygotes: 0

South Asian
type: Population
allele count: 228
allele frequency: 8.033826638477801e-2
allele num: 2838
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 4.838709677419355e-2
allele num: 372
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.13e-2

MQ
type: SiteQuality
SIO_000300: 5.942e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

DP
type: SiteQuality
SIO_000300: 1.72226e5

QD
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
all individuals: 361
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 2615
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12707
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3255
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 342
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2996
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.638806948541462e-4
allele num: 6102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.49327e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.38e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.97e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.363e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.058e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-1

GenotypeQuality
all individuals: 485
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12322
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 164
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.25e1
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GenotypeQuality
all individuals: 316
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2565
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 8.122157244964262e-4
allele num: 6156
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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ReadPosRankSum
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QD
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MQ
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InbreedingCoeff
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ClippingRankSum
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FS
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VQSLOD
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MQRankSum
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DP
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SIO_000300: 1.45758e5

BaseQRankSum
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SIO_000300: -4.7e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 1.29324280633689e-3
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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MQ
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 2.164502164502165e-3
allele num: 462
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Latino
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Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
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QD
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InbreedingCoeff
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VQSLOD
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FS
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MQRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: -1.9e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 4.587155963302753e-3
allele num: 218
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2730
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.892e1

FS
type: SiteQuality
SIO_000300: 8.94e-1

VQSLOD
type: SiteQuality
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MQRankSum
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QD
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: -4.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

InbreedingCoeff
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SIO_000300: -7.829999999999999e-2

DP
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SIO_000300: 1.43402e5

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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South Asian
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Other
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.44e-1

FS
type: SiteQuality
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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QD
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DP
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MQRankSum
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MQ
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InbreedingCoeff
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SIO_000300: -8.01e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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African
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East Asian
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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QD
type: SiteQuality
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MQ
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DP
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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FS
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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African
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Other
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VQSLOD
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QD
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InbreedingCoeff
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MQ
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MQRankSum
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FS
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DP
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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Other
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African
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East Asian
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European (Finnish)
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South Asian
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MQ
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ReadPosRankSum
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DP
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VQSLOD
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MQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
all individuals: 2705
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817080557238038e-4
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.76e-1

FS
type: SiteQuality
SIO_000300: 9.46e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

QD
type: SiteQuality
SIO_000300: 1.724e1

DP
type: SiteQuality
SIO_000300: 3.425629e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.807767752059631e-5
allele num: 10196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: -5.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.308e1

DP
type: SiteQuality
SIO_000300: 3.426803e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.03e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.73e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.428527e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

QD
type: SiteQuality
SIO_000300: 1.955e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.84e-1

MQ
type: SiteQuality
SIO_000300: 6.014e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.719e0

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.644e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

FS
type: SiteQuality
SIO_000300: 9.146000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.45e0

DP
type: SiteQuality
SIO_000300: 3.428843e6

GenotypeQuality
all individuals: 4732
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 2455
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variant carriers: 5

GenotypeQuality
all individuals: 2474
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GenotypeQuality
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GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 43585
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variant carriers: 10850

GenotypeQuality
all individuals: 5
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variant carriers: 1

GenotypeQuality
all individuals: 3
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variant carriers: 0

Latino
type: Population
allele count: 2486
allele frequency: 2.147546648237733e-1
allele num: 11576
num of homozygotes: 255

European (Finnish)
type: Population
allele count: 309
allele frequency: 4.671908073782885e-2
allele num: 6614
num of homozygotes: 6

South Asian
type: Population
allele count: 1194
allele frequency: 7.231980617807389e-2
allele num: 16510
num of homozygotes: 60

European (Non-Finnish)
type: Population
allele count: 6950
allele frequency: 1.041854050488697e-1
allele num: 66708
num of homozygotes: 379

African
type: Population
allele count: 476
allele frequency: 4.640280756482745e-2
allele num: 10258
num of homozygotes: 10

Other
type: Population
allele count: 89
allele frequency: 9.823399558498896e-2
allele num: 906
num of homozygotes: 7

East Asian
type: Population
allele count: 71
allele frequency: 8.204298590247284e-3
allele num: 8654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.27e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.81e0

QD
type: SiteQuality
SIO_000300: 1.727e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.06e-2

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.01e-1

DP
type: SiteQuality
SIO_000300: 3.98666e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.89e-1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 555

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 2832
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 24
allele frequency: 2.072896873380549e-3
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 537
allele frequency: 5.224751897256275e-2
allele num: 10278
num of homozygotes: 11

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.494903465643362e-5
allele num: 66712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.91e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

FS
type: SiteQuality
SIO_000300: 6.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.35e-2

DP
type: SiteQuality
SIO_000300: 3.333426e6

QD
type: SiteQuality
SIO_000300: 1.511e1

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3072
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.951e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.369e1

VQSLOD
type: SiteQuality
SIO_000300: -1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.072e0

DP
type: SiteQuality
SIO_000300: 3.284242e6

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

FS
type: SiteQuality
SIO_000300: 8.425000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.987e0

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 39144
bin: 9.75e1
variant carriers: 20

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 20
allele frequency: 1.727414061150458e-3
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.286289e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

QD
type: SiteQuality
SIO_000300: 1.079e1

MQRankSum
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SIO_000300: 3.31e-1

BaseQRankSum
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SIO_000300: -2.392e0

MQ
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SIO_000300: 5.969e1

InbreedingCoeff
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SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

FS
type: SiteQuality
SIO_000300: 1.974e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.695559433779329e-5
allele num: 10314
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: -2.047e0

DP
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BaseQRankSum
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MQRankSum
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SIO_000300: -6.55e-1

ReadPosRankSum
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SIO_000300: -1.436e0

MQ
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SIO_000300: 5.939e1

QD
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FS
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

FS
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SIO_000300: 0.0e0

MQ
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SIO_000300: 6.0e1

MQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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SIO_000300: -1.0e-4

BaseQRankSum
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SIO_000300: -1.305e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 3.284394e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 19
allele frequency: 1.839303000968054e-3
allele num: 10330
num of homozygotes: 0

European (Non-Finnish)
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allele count: 568
allele frequency: 8.512168804699675e-3
allele num: 66728
num of homozygotes: 3

Latino
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allele count: 22
allele frequency: 1.900155467265504e-3
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 45
allele frequency: 6.80374962201391e-3
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 113
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Other
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InbreedingCoeff
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SIO_000300: 3.9e-3

FS
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SIO_000300: 1.154e0

BaseQRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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QD
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ClippingRankSum
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SIO_000300: -3.31e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

DP
type: SiteQuality
SIO_000300: 3.354033e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele num: 10330
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Other
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European (Non-Finnish)
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ClippingRankSum
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SIO_000300: -3.31e-1

FS
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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MQ
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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Latino
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African
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQ
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BaseQRankSum
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DP
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MQRankSum
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QD
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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African
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Latino
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Other
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South Asian
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FS
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BaseQRankSum
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MQ
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ReadPosRankSum
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DP
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InbreedingCoeff
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MQRankSum
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VQSLOD
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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Latino
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Other
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European (Non-Finnish)
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East Asian
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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QD
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VQSLOD
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MQRankSum
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MQ
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66730
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Latino
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African
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FS
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VQSLOD
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BaseQRankSum
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QD
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MQRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Finnish)
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East Asian
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South Asian
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European (Non-Finnish)
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QD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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MQ
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FS
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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African
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Latino
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South Asian
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East Asian
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European (Non-Finnish)
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MQRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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DP
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FS
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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South Asian
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Latino
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African
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European (Non-Finnish)
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Other
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QD
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DP
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MQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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European (Finnish)
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East Asian
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African
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Other
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South Asian
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QD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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MQ
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VQSLOD
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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East Asian
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European (Finnish)
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Other
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VQSLOD
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MQ
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FS
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ReadPosRankSum
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QD
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DP
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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Latino
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South Asian
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East Asian
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European (Non-Finnish)
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ClippingRankSum
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FS
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MQRankSum
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QD
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ReadPosRankSum
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DP
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InbreedingCoeff
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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African
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South Asian
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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FS
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DP
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4504
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3072
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2810
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.256897e6

VQSLOD
type: SiteQuality
SIO_000300: 5.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e0

QD
type: SiteQuality
SIO_000300: 1.548e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

GenotypeQuality
all individuals: 169
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2810
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4504
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3072
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
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GenotypeQuality
all individuals: 2699
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38901
bin: 9.75e1
variant carriers: 122

GenotypeQuality
all individuals: 1640
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.320027648176948e-4
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 111
allele frequency: 1.665016650166502e-3
allele num: 66666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.940617116242965e-4
allele num: 10306
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817520901490367e-4
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.256897e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

QD
type: SiteQuality
SIO_000300: 1.548e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.62e0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3162
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38848
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1646
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4208
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2595
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1519
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3076
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.641e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.69e-1

QD
type: SiteQuality
SIO_000300: 2.487e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.423e0

DP
type: SiteQuality
SIO_000300: 3.251495e6

FS
type: SiteQuality
SIO_000300: 1.086e0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e-1

GenotypeQuality
all individuals: 132
bin: 4.25e1
variant carriers: 23

GenotypeQuality
all individuals: 279
bin: 3.75e1
variant carriers: 30

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 5

GenotypeQuality
all individuals: 976
bin: 7.25e1
variant carriers: 50

GenotypeQuality
all individuals: 151
bin: 4.75e1
variant carriers: 33

GenotypeQuality
all individuals: 1679
bin: 6.75e1
variant carriers: 78

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 38

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 256
bin: 2.25e1
variant carriers: 16

GenotypeQuality
all individuals: 1842
bin: 8.25e1
variant carriers: 108

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 296
bin: 3.25e1
variant carriers: 21

GenotypeQuality
all individuals: 46763
bin: 9.75e1
variant carriers: 32250

GenotypeQuality
all individuals: 134
bin: 5.75e1
variant carriers: 40

GenotypeQuality
all individuals: 1760
bin: 9.25e1
variant carriers: 151

GenotypeQuality
all individuals: 163
bin: 2.75e1
variant carriers: 11

GenotypeQuality
all individuals: 999
bin: 8.75e1
variant carriers: 95

East Asian
type: Population
allele count: 1404
allele frequency: 1.630283325592197e-1
allele num: 8612
num of homozygotes: 105

Other
type: Population
allele count: 297
allele frequency: 3.292682926829268e-1
allele num: 902
num of homozygotes: 44

Latino
type: Population
allele count: 2999
allele frequency: 2.595188646590516e-1
allele num: 11556
num of homozygotes: 401

South Asian
type: Population
allele count: 7004
allele frequency: 4.244334020118773e-1
allele num: 16502
num of homozygotes: 1489

African
type: Population
allele count: 4256
allele frequency: 4.134447250825724e-1
allele num: 10294
num of homozygotes: 875

European (Non-Finnish)
type: Population
allele count: 22034
allele frequency: 3.311391644123835e-1
allele num: 66540
num of homozygotes: 3616

European (Finnish)
type: Population
allele count: 1892
allele frequency: 2.862329803328291e-1
allele num: 6610
num of homozygotes: 279

MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.88e0

VQSLOD
type: SiteQuality
SIO_000300: 4.75e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.12e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

DP
type: SiteQuality
SIO_000300: 3.286118e6

QD
type: SiteQuality
SIO_000300: 2.036e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e-1

GenotypeQuality
all individuals: 512
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3536
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5595
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1986
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3488
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3641
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.005981903988938e-5
allele num: 66534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.78695e6

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.802e0

VQSLOD
type: SiteQuality
SIO_000300: 4.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

FS
type: SiteQuality
SIO_000300: 7.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 2.037e1

GenotypeQuality
all individuals: 3514
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 871
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3624
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 780
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1980
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 634
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31780
bin: 9.75e1
variant carriers: 342

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3307
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3747
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1975
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 323
allele frequency: 3.155529503712388e-2
allele num: 10236
num of homozygotes: 3

Other
type: Population
allele count: 2
allele frequency: 2.212389380530973e-3
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.511685264835925e-5
allele num: 66494
num of homozygotes: 0

Latino
type: Population
allele count: 17
allele frequency: 1.471097265489789e-3
allele num: 11556
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.9e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-2

DP
type: SiteQuality
SIO_000300: 2.781875e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.47e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

QD
type: SiteQuality
SIO_000300: 1.581e1

GenotypeQuality
all individuals: 3765
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3650
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3327
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1986
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4721
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3527
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.773260359655981e-5
allele num: 10232
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 2.779435e6

QD
type: SiteQuality
SIO_000300: 1.596e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

MQ
type: SiteQuality
SIO_000300: 5.92e1

VQSLOD
type: SiteQuality
SIO_000300: 3.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.993e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

GenotypeQuality
all individuals: 340
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3515
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1970
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1036
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31643
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3279
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1523
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3758
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3648
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3866
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.806249623697995e-4
allele num: 66436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.125e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

MQRankSum
type: SiteQuality
SIO_000300: -1.14e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.392e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.29e-1

FS
type: SiteQuality
SIO_000300: 2.107e0

DP
type: SiteQuality
SIO_000300: 2.777147e6

GenotypeQuality
all individuals: 1802
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5726
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4699
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7085
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2697
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6607
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5380
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2572
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1306
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2817
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2779
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7804
bin: 9.75e1
variant carriers: 5

African
type: Population
allele count: 4
allele frequency: 5.720823798627002e-4
allele num: 6992
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.021672327349183e-5
allele num: 49464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5270
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

QD
type: SiteQuality
SIO_000300: 8.68e0

VQSLOD
type: SiteQuality
SIO_000300: -1.796e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.059e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

DP
type: SiteQuality
SIO_000300: 1.297778e6

GenotypeQuality
all individuals: 3096
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2661
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7806
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2729
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1881
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7882
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4153
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1342
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5684
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1621
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1019
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2703
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8278
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.062240496634014e-5
allele num: 49614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9934
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14250
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

VQSLOD
type: SiteQuality
SIO_000300: 3.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

FS
type: SiteQuality
SIO_000300: 8.42e-1

QD
type: SiteQuality
SIO_000300: 1.315e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.69e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

DP
type: SiteQuality
SIO_000300: 1.308354e6

GenotypeQuality
all individuals: 502
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8286
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2569
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1565
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5372
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3086
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2812
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8922
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3748
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7809
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 536
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7048
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4806
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

FS
type: SiteQuality
SIO_000300: 3.617e0

DP
type: SiteQuality
SIO_000300: 1.31455e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 8.140000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 3.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 7829
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 13575
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9987
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1788
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3014
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 868
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3136
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5065
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4779
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1423
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 4.006570776072759e-4
allele num: 49918
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7098
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.285347043701799e-3
allele num: 778
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14298
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.351871e6

VQSLOD
type: SiteQuality
SIO_000300: 4.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.15e0

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

QD
type: SiteQuality
SIO_000300: 1.353e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

GenotypeQuality
all individuals: 788
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1683
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3169
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1603
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7820
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2282
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10198
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14447
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 549
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variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4490
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1436
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2968
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.010211876331765e-5
allele num: 49746
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7088
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9910
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.34e-1

QD
type: SiteQuality
SIO_000300: 3.451e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.24e-1

FS
type: SiteQuality
SIO_000300: 3.602e0

DP
type: SiteQuality
SIO_000300: 1.364688e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.6e-1

GenotypeQuality
all individuals: 933
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10647
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23588
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2625
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1282
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1164
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1663
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1988
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4211
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7849
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1723
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.917251428352314e-5
allele num: 52158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5754
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.203e0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

DP
type: SiteQuality
SIO_000300: 1.474685e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

QD
type: SiteQuality
SIO_000300: 1.267e1

GenotypeQuality
all individuals: 1687
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36223
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1791
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 891
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
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GenotypeQuality
all individuals: 106
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6252
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2369
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8068
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16226
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.554726368159204e-5
allele num: 64320
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.133e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.318e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.72e1

DP
type: SiteQuality
SIO_000300: 1.701476e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.45e-1

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 8

GenotypeQuality
all individuals: 696
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 4862
bin: 6.75e1
variant carriers: 16

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1438
bin: 7.25e1
variant carriers: 22

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 8

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 14

GenotypeQuality
all individuals: 1923
bin: 7.75e1
variant carriers: 29

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 15

GenotypeQuality
all individuals: 70
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 4

GenotypeQuality
all individuals: 20492
bin: 9.75e1
variant carriers: 14299

GenotypeQuality
all individuals: 27830
bin: 6.25e1
variant carriers: 17

GenotypeQuality
all individuals: 796
bin: 9.25e1
variant carriers: 38

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 7

GenotypeQuality
all individuals: 594
bin: 8.75e1
variant carriers: 25

GenotypeQuality
all individuals: 1451
bin: 8.25e1
variant carriers: 36

Other
type: Population
allele count: 109
allele frequency: 1.208425720620843e-1
allele num: 902
num of homozygotes: 11

East Asian
type: Population
allele count: 84
allele frequency: 9.959686981266303e-3
allele num: 8434
num of homozygotes: 0

Latino
type: Population
allele count: 2700
allele frequency: 2.350687793835974e-1
allele num: 11486
num of homozygotes: 296

South Asian
type: Population
allele count: 2144
allele frequency: 1.304612388949738e-1
allele num: 16434
num of homozygotes: 165

European (Non-Finnish)
type: Population
allele count: 8084
allele frequency: 1.227414897816647e-1
allele num: 65862
num of homozygotes: 523

European (Finnish)
type: Population
allele count: 378
allele frequency: 5.748175182481752e-2
allele num: 6576
num of homozygotes: 11

African
type: Population
allele count: 2297
allele frequency: 2.255498821681068e-1
allele num: 10184
num of homozygotes: 258

ClippingRankSum
type: SiteQuality
SIO_000300: -3.19e-1

DP
type: SiteQuality
SIO_000300: 2.195197e6

QD
type: SiteQuality
SIO_000300: 1.643e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

FS
type: SiteQuality
SIO_000300: 8.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.34e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5284
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variant carriers: 0

GenotypeQuality
all individuals: 1928
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18530
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.924557351809084e-4
allele num: 10392
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.147187e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.791e0

VQSLOD
type: SiteQuality
SIO_000300: 4.13e0

MQRankSum
type: SiteQuality
SIO_000300: 3.33e-1

FS
type: SiteQuality
SIO_000300: 1.548e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.54e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.64e-1

QD
type: SiteQuality
SIO_000300: 1.262e1

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 132

GenotypeQuality
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GenotypeQuality
all individuals: 1305
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.592912705272256e-4
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 8.481764206955047e-4
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 115
allele frequency: 1.33194347926801e-2
allele num: 8634
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.207505518763797e-3
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.13e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 1.548e0

MQRankSum
type: SiteQuality
SIO_000300: 3.33e-1

QD
type: SiteQuality
SIO_000300: 1.262e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.791e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.54e-1

DP
type: SiteQuality
SIO_000300: 2.147187e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.64e-1

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 1934
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997422216893472e-5
allele num: 66724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.7e-2

MQ
type: SiteQuality
SIO_000300: 5.978e1

DP
type: SiteQuality
SIO_000300: 2.147536e6

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.512e0

QD
type: SiteQuality
SIO_000300: 1.399e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1313
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e0

VQSLOD
type: SiteQuality
SIO_000300: -1.535e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.941e1

DP
type: SiteQuality
SIO_000300: 2.148021e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.4e0

QD
type: SiteQuality
SIO_000300: 1.719e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 484

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 1699
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variant carriers: 0

GenotypeQuality
all individuals: 5273
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variant carriers: 0

GenotypeQuality
all individuals: 28281
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2332
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variant carriers: 0

GenotypeQuality
all individuals: 1919
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variant carriers: 0

GenotypeQuality
all individuals: 1302
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

European (Finnish)
type: Population
allele count: 18
allele frequency: 2.721499848805564e-3
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 9.084302325581395e-4
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.153402537485583e-3
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 23
allele frequency: 1.986526170323026e-3
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.303964757709251e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 413
allele frequency: 6.188934843853024e-3
allele num: 66732
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.199071e6

VQSLOD
type: SiteQuality
SIO_000300: 4.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.664e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 5.47e-1

QD
type: SiteQuality
SIO_000300: 1.269e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1302
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 14

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.883506343713956e-4
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.661821705426356e-4
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

DP
type: SiteQuality
SIO_000300: 2.199071e6

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.31e0

QD
type: SiteQuality
SIO_000300: 1.269e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.664e0

FS
type: SiteQuality
SIO_000300: 5.47e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 28281
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.239341085271318e-4
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.318535152876144e-4
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.199071e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 5.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.664e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.31e0

QD
type: SiteQuality
SIO_000300: 1.269e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 1702
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 5278
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.498531439189594e-4
allele num: 66732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.49e0

MQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

QD
type: SiteQuality
SIO_000300: 1.12e1

FS
type: SiteQuality
SIO_000300: 5.639999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 2.178121e6

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1928
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28285
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5278
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18911
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1307
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1702
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.12e1

MQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.49e0

DP
type: SiteQuality
SIO_000300: 2.178121e6

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.956e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-2

FS
type: SiteQuality
SIO_000300: 5.639999999999999e-1